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  Home > Genomes > Dipodomys ordii 76_1 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Dipodomys ordii 76_1

Assignment details

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Dipodomys ordii 76_1 has 212 significant domains in 40 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000000066   0.00000000000000486   718-775   Complement control module/SCR domain  
ENSDORP00000000448   0.000000000000514   74-135   Complement control module/SCR domain  
  0.000000000862   22-86   Complement control module/SCR domain  
  0.0000681   168-193   Complement control module/SCR domain  
ENSDORP00000000449   5.53e-17   111-183   Complement control module/SCR domain  
  5.56e-16   234-299   Complement control module/SCR domain  
  0.00000000000000138   172-246   Complement control module/SCR domain  
  0.00000000000126   426-487   Complement control module/SCR domain  
  0.00000000000236   481-539   Complement control module/SCR domain  
  0.00000000283   49-115   Complement control module/SCR domain  
  0.0000000472   299-358   Complement control module/SCR domain  
ENSDORP00000001143   0.00000000000000526   707-772   Complement control module/SCR domain  
  0.00000000000115   766-828   Complement control module/SCR domain  
  0.0000000000208   833-893   Complement control module/SCR domain  
  0.0000000000607   357-420   Complement control module/SCR domain  
  0.000000000135   533-597   Complement control module/SCR domain  
ENSDORP00000001314   2.88e-17   579-647   Complement control module/SCR domain  
  3.01e-17   451-517   Complement control module/SCR domain  
  0.000000000000249   393-448   Complement control module/SCR domain  
  0.00000000000262   332-388   Complement control module/SCR domain  
  0.0000000000131   212-267   Complement control module/SCR domain  
  0.0000000000167   272-326   Complement control module/SCR domain  
  0.00000000577   90-148   Complement control module/SCR domain  
  0.0000000945   154-214   Complement control module/SCR domain  
  0.000021   38-95   Complement control module/SCR domain  
ENSDORP00000001322   8.2e-16   237-310   Complement control module/SCR domain  
  0.0000000000000153   294-361   Complement control module/SCR domain  
  0.000000000000208   175-248   Complement control module/SCR domain  
  0.000000334   359-409   Complement control module/SCR domain  
ENSDORP00000003221   2.04e-20   264-345   Complement control module/SCR domain  
  7.86e-18   83-148   Complement control module/SCR domain  
  0.0000000000000764   140-214   Complement control module/SCR domain  
  0.00000000000114   203-261   Complement control module/SCR domain  
  0.00000000000983   22-93   Complement control module/SCR domain  
ENSDORP00000003417   1.11e-17   128-200   Complement control module/SCR domain  
  5.84e-17   189-251   Complement control module/SCR domain  
  0.00000000000144   63-138   Complement control module/SCR domain  
  0.000000000005   2-68   Complement control module/SCR domain  
ENSDORP00000004268   0.00000000195   73-129   Complement control module/SCR domain  
  0.00000361   26-73   Complement control module/SCR domain  
ENSDORP00000004406   0.00000000306   1207-1279   Complement control module/SCR domain  
  0.000373   1271-1306   Complement control module/SCR domain  
  0.00057   1071-1110   Complement control module/SCR domain  
  0.00311   1183-1212   Complement control module/SCR domain  
ENSDORP00000004589   7.09e-16   200-267   Complement control module/SCR domain  
  0.00000000000000106   325-392   Complement control module/SCR domain  
  0.00000000000000111   256-322   Complement control module/SCR domain  
  0.0000000000000114   447-520   Complement control module/SCR domain  
  0.0000000000000236   380-446   Complement control module/SCR domain  
  0.0000000000000612   633-698   Complement control module/SCR domain  
  0.000000000000104   504-569   Complement control module/SCR domain  
  0.000000000000306   579-644   Complement control module/SCR domain  
ENSDORP00000004881   0.0000000125   47-109   Complement control module/SCR domain  
ENSDORP00000005413   0.00000000000000709   263-323   Complement control module/SCR domain  
  0.0000361   59-118   Complement control module/SCR domain  
ENSDORP00000005751   0.0000000000243   121-182   Complement control module/SCR domain  
  0.0000000162   23-80   Complement control module/SCR domain  
ENSDORP00000006724   0.000000000418   41-102   Complement control module/SCR domain  
ENSDORP00000006875   0.000000000000917   479-541   Complement control module/SCR domain  
  0.00000000000127   547-606   Complement control module/SCR domain  
  0.00000000000612   69-130   Complement control module/SCR domain  
  0.000000000389   420-477   Complement control module/SCR domain  
  0.000000000418   243-308   Complement control module/SCR domain  
ENSDORP00000006981   1.35e-18   2674-2742   Complement control module/SCR domain  
  1.2e-17   3029-3100   Complement control module/SCR domain  
  1.2e-17   3089-3158   Complement control module/SCR domain  
  1.81e-17   2914-2981   Complement control module/SCR domain  
  7.56e-17   2731-2798   Complement control module/SCR domain  
  5.7e-16   3209-3277   Complement control module/SCR domain  
  0.00000000000000153   2970-3040   Complement control module/SCR domain  
  0.00000000000000283   319-385   Complement control module/SCR domain  
  0.0000000000000108   2058-2126   Complement control module/SCR domain  
  0.0000000000000337   1885-1947   Complement control module/SCR domain  
  0.0000000000000375   2585-2648   Complement control module/SCR domain  
  0.0000000000000848   497-559   Complement control module/SCR domain  
  0.000000000000167   3141-3203   Complement control module/SCR domain  
  0.000000000000189   1186-1250   Complement control module/SCR domain  
  0.00000000000027   115-175   Complement control module/SCR domain  
  0.000000000000278   1361-1424   Complement control module/SCR domain  
  0.000000000000306   2846-2906   Complement control module/SCR domain  
  0.000000000000556   843-899   Complement control module/SCR domain  
  0.000000000000607   1534-1601   Complement control module/SCR domain  
  0.00000000000361   2228-2292   Complement control module/SCR domain  
  0.00000000000445   1711-1774   Complement control module/SCR domain  
  0.00000000000653   3268-3327   Complement control module/SCR domain  
  0.0000000000103   1016-1078   Complement control module/SCR domain  
  0.0000000000181   2527-2602   Complement control module/SCR domain  
  0.0000000000306   2402-2463   Complement control module/SCR domain  
  0.0000000000334   2789-2856   Complement control module/SCR domain  
  0.0000000000639   668-727   Complement control module/SCR domain  
ENSDORP00000007006   0.0000000000000167   370-436   Complement control module/SCR domain  
  0.0000153   347-379   Complement control module/SCR domain  
ENSDORP00000007652   0.0000000000000419   84-145   Complement control module/SCR domain  
  0.00000000000262   924-985   Complement control module/SCR domain  
  0.00000000000293   680-745   Complement control module/SCR domain  
  0.000000000157   982-1043   Complement control module/SCR domain  
  0.000000000511   260-323   Complement control module/SCR domain  
  0.00000000055   560-622   Complement control module/SCR domain  
  0.00000000122   868-926   Complement control module/SCR domain  
  0.00000000256   208-268   Complement control module/SCR domain  
  0.000000076   23-88   Complement control module/SCR domain  
  0.0000000865   809-864   Complement control module/SCR domain  
  0.000000124   387-443   Complement control module/SCR domain  
  0.00000027   506-570   Complement control module/SCR domain  
  0.000642   316-383   Complement control module/SCR domain  
ENSDORP00000007698   0.00000000000000695   289-351   Complement control module/SCR domain  
  0.000000000000118   703-764   Complement control module/SCR domain  
  0.000000000000153   643-701   Complement control module/SCR domain  
  0.00000000000315   771-837   Complement control module/SCR domain  
  0.0000000511   464-529   Complement control module/SCR domain  
ENSDORP00000007792   0.0000000000208   568-635   Complement control module/SCR domain  
  0.00000000542   624-680   Complement control module/SCR domain  
ENSDORP00000008099   0.0000000256   699-756   Complement control module/SCR domain  
  0.0000000256   644-700   Complement control module/SCR domain  
ENSDORP00000008462   0.0000000000959   31-92   Complement control module/SCR domain  
ENSDORP00000008616   4.17e-17   153-224   Complement control module/SCR domain  
  1.95e-16   769-831   Complement control module/SCR domain  
  2.78e-16   525-594   Complement control module/SCR domain  
  5.14e-16   410-472   Complement control module/SCR domain  
  0.00000000000000108   274-343   Complement control module/SCR domain  
  0.00000000000000778   901-966   Complement control module/SCR domain  
  0.0000000000000431   606-664   Complement control module/SCR domain  
  0.0000000000000542   349-419   Complement control module/SCR domain  
  0.000000000000306   955-1019   Complement control module/SCR domain  
  0.00000000000114   214-285   Complement control module/SCR domain  
  0.0000000000012   837-897   Complement control module/SCR domain  
  0.00000000000133   661-721   Complement control module/SCR domain  
  0.00000000000306   88-147   Complement control module/SCR domain  
  0.0000000000876   21-82   Complement control module/SCR domain  
  0.00000032   733-780   Complement control module/SCR domain  
  0.000208   483-536   Complement control module/SCR domain  
ENSDORP00000008928   0.000000000000167   296-366   Complement control module/SCR domain  
ENSDORP00000009823   0.000000000195   803-862   Complement control module/SCR domain  
ENSDORP00000010996   0.000000000000089   88-148   Complement control module/SCR domain  
  0.00000000000598   154-210   Complement control module/SCR domain  
  0.0000577   24-74   Complement control module/SCR domain  
ENSDORP00000011001   0.00000181   44-84   Complement control module/SCR domain  
ENSDORP00000011225   0.0000000000181   142-213   Complement control module/SCR domain  
  0.0000000000486   202-261   Complement control module/SCR domain  
ENSDORP00000011252   1.48e-19   2157-2225   Complement control module/SCR domain  
  4.86e-17   2513-2578   Complement control module/SCR domain  
  1.75e-16   2454-2524   Complement control module/SCR domain  
  7.23e-16   2631-2688   Complement control module/SCR domain  
  0.00000000000000297   2214-2271   Complement control module/SCR domain  
  0.00000000000000364   2693-2761   Complement control module/SCR domain  
  0.0000000000000135   2575-2638   Complement control module/SCR domain  
  0.0000000000000347   2335-2391   Complement control module/SCR domain  
  0.0000000000000364   869-933   Complement control module/SCR domain  
  0.0000000000000528   177-245   Complement control module/SCR domain  
  0.0000000000000556   7-68   Complement control module/SCR domain  
  0.0000000000000607   1219-1281   Complement control module/SCR domain  
  0.000000000000283   1393-1457   Complement control module/SCR domain  
  0.000000000000472   1565-1634   Complement control module/SCR domain  
  0.00000000000162   1736-1800   Complement control module/SCR domain  
  0.00000000000432   524-585   Complement control module/SCR domain  
  0.000000000082   2752-2809   Complement control module/SCR domain  
  0.000000000148   1909-1970   Complement control module/SCR domain  
ENSDORP00000011592   1.48e-20   3169-3240   Complement control module/SCR domain  
  8.09e-18   2931-2997   Complement control module/SCR domain  
  4.59e-17   2756-2825   Complement control module/SCR domain  
  2.43e-16   2815-2871   Complement control module/SCR domain  
  2.56e-16   3229-3298   Complement control module/SCR domain  
  0.00000000000000256   2222-2291   Complement control module/SCR domain  
  0.00000000000000292   484-555   Complement control module/SCR domain  
  0.00000000000000292   3288-3344   Complement control module/SCR domain  
  0.0000000000000043   2629-2696   Complement control module/SCR domain  
  0.0000000000000208   3349-3416   Complement control module/SCR domain  
  0.0000000000000222   2567-2640   Complement control module/SCR domain  
  0.0000000000000378   1008-1068   Complement control module/SCR domain  
  0.0000000000000971   1699-1764   Complement control module/SCR domain  
  0.000000000000106   1876-1942   Complement control module/SCR domain  
  0.000000000000139   662-721   Complement control module/SCR domain  
  0.00000000000032   2986-3047   Complement control module/SCR domain  
  0.00000000000054   177-238   Complement control module/SCR domain  
  0.00000000000058   1181-1243   Complement control module/SCR domain  
  0.0000000000013   1352-1414   Complement control module/SCR domain  
  0.00000000000222   3407-3465   Complement control module/SCR domain  
  0.00000000000337   833-901   Complement control module/SCR domain  
  0.00000000000403   2703-2767   Complement control module/SCR domain  
  0.0000000000702   2393-2456   Complement control module/SCR domain  
ENSDORP00000011689   3.37e-18   1963-2032   Complement control module/SCR domain  
  4.18e-18   2649-2718   Complement control module/SCR domain  
  5.53e-18   2315-2384   Complement control module/SCR domain  
  5.98e-18   2707-2776   Complement control module/SCR domain  
  2.29e-17   3055-3119   Complement control module/SCR domain  
  2.56e-17   2591-2659   Complement control module/SCR domain  
  2.83e-17   2198-2268   Complement control module/SCR domain  
  5.26e-17   2083-2147   Complement control module/SCR domain  
  1.39e-16   2533-2602   Complement control module/SCR domain  
  2.56e-16   1609-1678   Complement control module/SCR domain  
  2.83e-16   2487-2544   Complement control module/SCR domain  
  4.05e-16   2373-2440   Complement control module/SCR domain  
  6.15e-16   2881-2949   Complement control module/SCR domain  
  0.00000000000000139   2257-2326   Complement control module/SCR domain  
  0.00000000000000208   1505-1567   Complement control module/SCR domain  
  0.00000000000000702   2765-2830   Complement control module/SCR domain  
  0.0000000000000417   260-327   Complement control module/SCR domain  
  0.000000000000153   1450-1522   Complement control module/SCR domain  
  0.000000000000567   2825-2891   Complement control module/SCR domain  
  0.00000000000118   199-270   Complement control module/SCR domain  
  0.00000000000403   2021-2086   Complement control module/SCR domain  
  0.00000000000598   2141-2208   Complement control module/SCR domain  
  0.0000000000667   1902-1970   Complement control module/SCR domain  
  0.00000032   320-376   Complement control module/SCR domain  
  0.00000302   1778-1816   Complement control module/SCR domain  
  0.0000792   3110-3167   Complement control module/SCR domain  
  0.000306   1864-1905   Complement control module/SCR domain  
  0.000919   1667-1702,1755-1781   Complement control module/SCR domain  
  0.00195   549-602   Complement control module/SCR domain  
ENSDORP00000011945   0.000000000000208   180-239   Complement control module/SCR domain  
  0.00000000021   243-304   Complement control module/SCR domain  
  0.000000157   120-178   Complement control module/SCR domain  
ENSDORP00000013056   0.00000000000256   1090-1149   Complement control module/SCR domain  
ENSDORP00000014163   0.000000000000361   119-181   Complement control module/SCR domain  
ENSDORP00000014291   0.0000000000000513   400-470   Complement control module/SCR domain  
  0.00000284   467-533   Complement control module/SCR domain  
ENSDORP00000014582   0.0000688   1469-1519   Complement control module/SCR domain  
  0.000106   1579-1636   Complement control module/SCR domain  
  0.0142   1408-1456   Complement control module/SCR domain  
ENSDORP00000014774   0.00000000000959   2166-2226   Complement control module/SCR domain  
ENSDORP00000014845   9.45e-16   78-147   Complement control module/SCR domain  
ENSDORP00000014944   0.0000000000876   3254-3312   Complement control module/SCR domain  
 
Weak hits:
ENSDORP00000004721   0.00559   300-338   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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