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  Home > Genomes > Tetraodon nigroviridis 69_8 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Tetraodon nigroviridis 69_8

Assignment details

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Tetraodon nigroviridis 69_8 has 248 significant domains in 53 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTNIP00000000644   0.0000000153   36-100   Complement control module/SCR domain  
ENSTNIP00000001344   2.43e-19   253-337   Complement control module/SCR domain  
  2.5e-16   87-155   Complement control module/SCR domain  
  0.0000000000131   26-92   Complement control module/SCR domain  
  0.000000216   203-254   Complement control module/SCR domain  
  0.000486   144-211   Complement control module/SCR domain  
ENSTNIP00000001601   0.000000000000297   574-634   Complement control module/SCR domain  
  0.00000175   628-685   Complement control module/SCR domain  
ENSTNIP00000001774   5.56e-19   337-405   Complement control module/SCR domain  
  7.02e-17   275-331   Complement control module/SCR domain  
  5.84e-16   516-576   Complement control module/SCR domain  
  0.00000000000000256   390-455   Complement control module/SCR domain  
  0.0000000000000202   822-884   Complement control module/SCR domain  
  0.000000000000025   159-222   Complement control module/SCR domain  
  0.000000000000131   643-705   Complement control module/SCR domain  
  0.000000000000133   759-815   Complement control module/SCR domain  
  0.00000000000027   78-138   Complement control module/SCR domain  
  0.00000000000032   938-995   Complement control module/SCR domain  
  0.00000000000175   473-523   Complement control module/SCR domain  
  0.00000000000347   211-265   Complement control module/SCR domain  
  0.0000000000114   11-71   Complement control module/SCR domain  
ENSTNIP00000001943   0.0000000000000082   129-191   Complement control module/SCR domain  
  0.00000000828   24-79   Complement control module/SCR domain  
  0.0000000108   73-143   Complement control module/SCR domain  
ENSTNIP00000002646   0.00000000000000195   47-107   Complement control module/SCR domain  
  0.000000000000222   220-286   Complement control module/SCR domain  
ENSTNIP00000002717   0.000000000000459   151-212   Complement control module/SCR domain  
  0.0000000119   28-84   Complement control module/SCR domain  
  0.0000000243   237-276   Complement control module/SCR domain  
  0.0000000445   88-144   Complement control module/SCR domain  
ENSTNIP00000002837   4.72e-19   2829-2898   Complement control module/SCR domain  
  4.59e-18   2772-2840   Complement control module/SCR domain  
  7.64e-18   3013-3082   Complement control module/SCR domain  
  9.98e-17   3191-3259   Complement control module/SCR domain  
  1.35e-16   3130-3201   Complement control module/SCR domain  
  0.00000000000000445   3310-3378   Complement control module/SCR domain  
  0.00000000000000514   416-487   Complement control module/SCR domain  
  0.0000000000000082   2006-2070   Complement control module/SCR domain  
  0.00000000000001   3071-3135   Complement control module/SCR domain  
  0.0000000000000121   2178-2247   Complement control module/SCR domain  
  0.0000000000000175   2947-3007   Complement control module/SCR domain  
  0.0000000000000361   2523-2596   Complement control module/SCR domain  
  0.00000000000005   1282-1348   Complement control module/SCR domain  
  0.0000000000000985   939-999   Complement control module/SCR domain  
  0.000000000000167   764-833   Complement control module/SCR domain  
  0.000000000000215   2888-2955   Complement control module/SCR domain  
  0.000000000000256   114-174   Complement control module/SCR domain  
  0.000000000000264   2713-2776   Complement control module/SCR domain  
  0.000000000000612   3242-3304   Complement control module/SCR domain  
  0.000000000000709   1832-1896   Complement control module/SCR domain  
  0.000000000000917   2349-2412   Complement control module/SCR domain  
  0.00000000000167   3369-3427   Complement control module/SCR domain  
  0.00000000000542   594-649   Complement control module/SCR domain  
  0.00000000000639   2585-2652   Complement control module/SCR domain  
  0.0000000000148   1112-1173   Complement control module/SCR domain  
  0.0000000167   2665-2720   Complement control module/SCR domain  
ENSTNIP00000003188   0.000000000000025   309-379   Complement control module/SCR domain  
  0.000000000375   376-446   Complement control module/SCR domain  
ENSTNIP00000003310   0.00000000000000189   47-109   Complement control module/SCR domain  
  0.00000000000000216   219-288   Complement control module/SCR domain  
ENSTNIP00000003491   0.0000000000162   1760-1819   Complement control module/SCR domain  
ENSTNIP00000003910   0.00000000973   1197-1259   Complement control module/SCR domain  
  0.000000104   1255-1326   Complement control module/SCR domain  
  0.00000106   1320-1384   Complement control module/SCR domain  
  0.000514   1128-1197   Complement control module/SCR domain  
ENSTNIP00000005183   0.0000000000723   102-158   Complement control module/SCR domain  
  0.000000417   54-105   Complement control module/SCR domain  
ENSTNIP00000005791   0.00000000000000208   357-422   Complement control module/SCR domain  
  0.00000000000000403   294-361   Complement control module/SCR domain  
  0.000000000000153   563-623   Complement control module/SCR domain  
  0.000000000000264   479-545   Complement control module/SCR domain  
  0.0000000000057   245-305   Complement control module/SCR domain  
  0.0000000000236   418-483   Complement control module/SCR domain  
  0.0000000000639   177-243   Complement control module/SCR domain  
  0.000000000133   613-678   Complement control module/SCR domain  
ENSTNIP00000006096   0.000000000000403   549-612   Complement control module/SCR domain  
  0.000000000000848   489-547   Complement control module/SCR domain  
  0.00000000000351   136-198   Complement control module/SCR domain  
  0.00000000017   617-676   Complement control module/SCR domain  
  0.00000000375   312-375   Complement control module/SCR domain  
ENSTNIP00000006703   0.00000000000000361   469-534   Complement control module/SCR domain  
  0.000000000000278   529-590   Complement control module/SCR domain  
  0.000000000000283   112-179   Complement control module/SCR domain  
  0.000000000000433   597-656   Complement control module/SCR domain  
  0.000000000278   290-349   Complement control module/SCR domain  
ENSTNIP00000008352   0.000000000132   663-719   Complement control module/SCR domain  
ENSTNIP00000009588   0.000000121   2-56   Complement control module/SCR domain  
ENSTNIP00000010857   0.00000000000594   359-432   Complement control module/SCR domain  
  0.000000000124   296-362   Complement control module/SCR domain  
ENSTNIP00000010858   0.000000000000025   309-379   Complement control module/SCR domain  
  0.000000000375   376-446   Complement control module/SCR domain  
ENSTNIP00000010924   1.04e-19   264-338   Complement control module/SCR domain  
  0.00000000000000806   197-261   Complement control module/SCR domain  
  0.0000000000000405   145-213   Complement control module/SCR domain  
  0.00000000639   71-131   Complement control module/SCR domain  
ENSTNIP00000011929   0.00000000000000709   699-756   Complement control module/SCR domain  
ENSTNIP00000012047   1.35e-20   3017-3088   Complement control module/SCR domain  
  4.72e-19   3077-3146   Complement control module/SCR domain  
  1.89e-18   2661-2729   Complement control module/SCR domain  
  1.53e-17   2777-2850   Complement control module/SCR domain  
  1.53e-17   2901-2969   Complement control module/SCR domain  
  8.9e-17   2718-2786   Complement control module/SCR domain  
  2.5e-16   2602-2671   Complement control module/SCR domain  
  6.21e-16   2833-2894   Complement control module/SCR domain  
  0.00000000000000106   2959-3022   Complement control module/SCR domain  
  0.00000000000000667   2068-2136   Complement control module/SCR domain  
  0.0000000000000139   318-389   Complement control module/SCR domain  
  0.000000000000025   3197-3265   Complement control module/SCR domain  
  0.000000000000032   2413-2486   Complement control module/SCR domain  
  0.0000000000000378   1363-1429   Complement control module/SCR domain  
  0.0000000000000473   1722-1787   Complement control module/SCR domain  
  0.0000000000000756   1896-1958   Complement control module/SCR domain  
  0.000000000000089   1544-1609   Complement control module/SCR domain  
  0.000000000000222   841-901   Complement control module/SCR domain  
  0.000000000000264   113-177   Complement control module/SCR domain  
  0.00000000000058   1017-1079   Complement control module/SCR domain  
  0.000000000000625   666-735   Complement control module/SCR domain  
  0.000000000000715   1189-1251   Complement control module/SCR domain  
  0.00000000000104   3129-3191   Complement control module/SCR domain  
  0.00000000000222   3257-3315   Complement control module/SCR domain  
  0.00000000000324   2547-2608   Complement control module/SCR domain  
  0.00000000000417   2477-2541   Complement control module/SCR domain  
  0.0000000000431   496-557   Complement control module/SCR domain  
  0.000000000202   2239-2304   Complement control module/SCR domain  
ENSTNIP00000012083   7.23e-19   3026-3097   Complement control module/SCR domain  
  1.62e-17   2670-2736   Complement control module/SCR domain  
  1.89e-17   3086-3155   Complement control module/SCR domain  
  1.95e-17   2910-2977   Complement control module/SCR domain  
  1.67e-16   2727-2795   Complement control module/SCR domain  
  2.02e-16   2422-2495   Complement control module/SCR domain  
  0.00000000000000612   3206-3272   Complement control module/SCR domain  
  0.00000000000000998   2787-2855   Complement control module/SCR domain  
  0.0000000000000153   2967-3031   Complement control module/SCR domain  
  0.0000000000000222   2611-2674   Complement control module/SCR domain  
  0.0000000000000959   1372-1438   Complement control module/SCR domain  
  0.000000000000108   1901-1963   Complement control module/SCR domain  
  0.000000000000138   1197-1263   Complement control module/SCR domain  
  0.000000000000202   1545-1611   Complement control module/SCR domain  
  0.000000000000389   2077-2145   Complement control module/SCR domain  
  0.000000000000459   679-749   Complement control module/SCR domain  
  0.000000000000553   2485-2551   Complement control module/SCR domain  
  0.00000000000057   508-573   Complement control module/SCR domain  
  0.00000000000057   3144-3201   Complement control module/SCR domain  
  0.00000000000101   1726-1786   Complement control module/SCR domain  
  0.00000000000138   2848-2904   Complement control module/SCR domain  
  0.000000000011   326-402   Complement control module/SCR domain  
  0.0000000000113   2247-2311   Complement control module/SCR domain  
  0.0000000000119   1026-1095   Complement control module/SCR domain  
  0.0000000000347   3265-3323   Complement control module/SCR domain  
  0.00000000089   854-913   Complement control module/SCR domain  
  0.00000000089   2547-2622   Complement control module/SCR domain  
ENSTNIP00000012159   0.0000000000000153   80-147   Complement control module/SCR domain  
ENSTNIP00000012478   0.00000000000486   272-335   Complement control module/SCR domain  
ENSTNIP00000012874   0.000000000000005   88-149   Complement control module/SCR domain  
  0.0000000000625   155-211   Complement control module/SCR domain  
  0.0000000122   36-98   Complement control module/SCR domain  
ENSTNIP00000013301   0.0000000000005   783-847   Complement control module/SCR domain  
ENSTNIP00000013682   0.0000000000000017   477-542   Complement control module/SCR domain  
  0.0000000000000514   536-598   Complement control module/SCR domain  
  0.0000000000584   299-363   Complement control module/SCR domain  
  0.000000000183   605-663   Complement control module/SCR domain  
ENSTNIP00000014132   0.0000000000000162   299-368   Complement control module/SCR domain  
  0.00000000403   365-432   Complement control module/SCR domain  
ENSTNIP00000014134   0.000000278   380-441   Complement control module/SCR domain  
  0.0000946   357-387   Complement control module/SCR domain  
ENSTNIP00000014321   0.0000000000025   281-342   Complement control module/SCR domain  
ENSTNIP00000014383   0.00000000000181   263-330   Complement control module/SCR domain  
  0.00000117   323-378   Complement control module/SCR domain  
ENSTNIP00000015299   0.000000000834   26-97   Complement control module/SCR domain  
  0.00000000556   88-154   Complement control module/SCR domain  
  0.0000000059   170-216   Complement control module/SCR domain  
  0.0000000931   208-266   Complement control module/SCR domain  
ENSTNIP00000015300   2.16e-16   179-242   Complement control module/SCR domain  
  0.00000000000432   14-62   Complement control module/SCR domain  
  0.000000000148   120-176   Complement control module/SCR domain  
  0.0000000621   63-131   Complement control module/SCR domain  
ENSTNIP00000015301   0.0000000000634   301-364   Complement control module/SCR domain  
  0.000000917   68-124   Complement control module/SCR domain  
  0.0000027   236-296   Complement control module/SCR domain  
  0.00000328   31-75   Complement control module/SCR domain  
  0.00000373   182-234   Complement control module/SCR domain  
  0.000306   124-179   Complement control module/SCR domain  
  0.00489   359-410   Complement control module/SCR domain  
ENSTNIP00000015435   0.0000000000000119   315-383   Complement control module/SCR domain  
  0.000000000000012   75-143   Complement control module/SCR domain  
  0.000000000000334   188-253   Complement control module/SCR domain  
  0.0000000000612   426-488   Complement control module/SCR domain  
  0.0000000000998   253-325   Complement control module/SCR domain  
  0.000000000207   368-430   Complement control module/SCR domain  
  0.000000000236   26-85   Complement control module/SCR domain  
  0.000000000236   126-190   Complement control module/SCR domain  
ENSTNIP00000015553   0.0000000000000324   105-175   Complement control module/SCR domain  
  0.000000000000347   167-230   Complement control module/SCR domain  
  0.0000000000202   221-282   Complement control module/SCR domain  
  0.000000000403   52-108   Complement control module/SCR domain  
  0.0000085   2-48   Complement control module/SCR domain  
ENSTNIP00000015960   0.000000000139   832-890   Complement control module/SCR domain  
ENSTNIP00000016175   0.00000000000973   1010-1070   Complement control module/SCR domain  
ENSTNIP00000016570   0.0000000264   1146-1204   Complement control module/SCR domain  
ENSTNIP00000016583   0.0000000000000108   469-535   Complement control module/SCR domain  
  0.000000000000391   528-590   Complement control module/SCR domain  
  0.000000000000747   595-655   Complement control module/SCR domain  
  0.00000000000283   113-175   Complement control module/SCR domain  
  0.00000000236   290-354   Complement control module/SCR domain  
ENSTNIP00000016855   0.0000000000005   142-213   Complement control module/SCR domain  
  0.000000000000792   203-271   Complement control module/SCR domain  
  0.00000000528   257-318   Complement control module/SCR domain  
  0.000000556   491-544   Complement control module/SCR domain  
ENSTNIP00000016856   1.25e-18   928-994   Complement control module/SCR domain  
  1.53e-18   1045-1113   Complement control module/SCR domain  
  1.75e-17   399-468   Complement control module/SCR domain  
  1.81e-17   1339-1410   Complement control module/SCR domain  
  2.78e-17   813-881   Complement control module/SCR domain  
  2.29e-16   520-586   Complement control module/SCR domain  
  5.26e-16   636-707   Complement control module/SCR domain  
  8.62e-16   457-530   Complement control module/SCR domain  
  0.00000000000000148   1103-1166   Complement control module/SCR domain  
  0.0000000000000032   755-817   Complement control module/SCR domain  
  0.000000000000005   1217-1285   Complement control module/SCR domain  
  0.0000000000000057   33-95   Complement control module/SCR domain  
  0.00000000000000931   214-284   Complement control module/SCR domain  
  0.0000000000000138   696-765   Complement control module/SCR domain  
  0.0000000000000375   98-161   Complement control module/SCR domain  
  0.0000000000000556   157-224   Complement control module/SCR domain  
  0.0000000000000598   872-932   Complement control module/SCR domain  
  0.000000000000528   1466-1519   Complement control module/SCR domain  
  0.00000000000264   2-45   Complement control module/SCR domain  
  0.0000000000123   1163-1223   Complement control module/SCR domain  
  0.0000000000222   273-341   Complement control module/SCR domain  
  0.0000000000667   578-641   Complement control module/SCR domain  
  0.000000000115   985-1047   Complement control module/SCR domain  
  0.000000000264   338-404   Complement control module/SCR domain  
  0.000000000375   1423-1475   Complement control module/SCR domain  
  0.000000000987   1278-1345   Complement control module/SCR domain  
ENSTNIP00000016910   0.00000000000000445   63-124   Complement control module/SCR domain  
  0.0000000000542   209-267   Complement control module/SCR domain  
  0.00000000431   4-77   Complement control module/SCR domain  
ENSTNIP00000017362   0.0000000000025   93-154   Complement control module/SCR domain  
  0.0000000000208   159-215   Complement control module/SCR domain  
  0.0000278   46-79   Complement control module/SCR domain  
ENSTNIP00000018368   0.0000000000681   1135-1193   Complement control module/SCR domain  
ENSTNIP00000018503   0.0000000000306   3199-3259   Complement control module/SCR domain  
ENSTNIP00000019714   0.00000000000000292   79-146   Complement control module/SCR domain  
ENSTNIP00000019977   0.00000000000000181   86-147   Complement control module/SCR domain  
  0.0000000000000264   237-295   Complement control module/SCR domain  
  0.00000000104   49-101   Complement control module/SCR domain  
ENSTNIP00000020581   0.000000000000944   35-95   Complement control module/SCR domain  
  0.00000000195   103-163   Complement control module/SCR domain  
ENSTNIP00000020672   0.0000000000121   784-851   Complement control module/SCR domain  
ENSTNIP00000021921   0.0000000133   1282-1347   Complement control module/SCR domain  
  0.0000000167   1343-1412   Complement control module/SCR domain  
  0.000000848   1404-1471   Complement control module/SCR domain  
 
Weak hits:
ENSTNIP00000000953   0.0507   473-510   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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