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  Home > Genomes > Xenopus tropicalis 69_4.2 > Spectrin repeat domains


Spectrin repeat superfamily domain assignments
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Xenopus tropicalis 69_4.2

Assignment details

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Xenopus tropicalis 69_4.2 has 289 significant domains in 33 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSXETP00000000062   2.73e-34   233-355   Spectrin repeat  
  2.09e-29   469-587   Spectrin repeat  
  7.72e-25   356-464   Spectrin repeat  
  4.17e-22   593-705   Spectrin repeat  
ENSXETP00000000063   1.22e-32   278-400   Spectrin repeat  
  1.44e-32   514-635   Spectrin repeat  
  5.89e-25   401-509   Spectrin repeat  
  4.97e-22   639-750   Spectrin repeat  
ENSXETP00000004087   0.0000000000000533   280-415   Spectrin repeat  
  0.0000000177   371-515   Spectrin repeat  
ENSXETP00000005472   1.02e-35   293-414   Spectrin repeat  
  9e-32   601-740   Spectrin repeat  
  1.83e-29   1009-1163   Spectrin repeat  
  2.55e-28   902-1056   Spectrin repeat  
  2.61e-27   1221-1374   Spectrin repeat  
  5.08e-27   1861-2015   Spectrin repeat  
  1.13e-22   1702-1805   Spectrin repeat  
  1.19e-22   527-635   Spectrin repeat  
  1.58e-22   736-853   Spectrin repeat  
  1.96e-22   423-526   Spectrin repeat  
  1.83e-17   1382-1480   Spectrin repeat  
  0.00000000000008   1484-1548,1660-1698   Spectrin repeat  
  0.000000000000314   1999-2081   Spectrin repeat  
ENSXETP00000015718   0.0000662   540-668   Spectrin repeat  
  0.00011   1699-1789   Spectrin repeat  
  0.00254   1100-1201   Spectrin repeat  
  0.015   789-938   Spectrin repeat  
  0.0612   2060-2213   Spectrin repeat  
  0.0748   1797-1905   Spectrin repeat  
  0.0767   1622-1726   Spectrin repeat  
ENSXETP00000015764   2.88e-17   1374-1490   Spectrin repeat  
  5.97e-17   1220-1345   Spectrin repeat  
  3.4e-16   1441-1595   Spectrin repeat  
  0.0000000000000024   157-298   Spectrin repeat  
  0.000000000000701   1006-1159   Spectrin repeat  
  0.0000000000124   1791-1923   Spectrin repeat  
  0.000000000806   1884-2028   Spectrin repeat  
  0.0000000298   587-737   Spectrin repeat  
  0.0000000942   85-193   Spectrin repeat  
  0.000000173   312-413   Spectrin repeat  
  0.000000256   495-622   Spectrin repeat  
  0.000000662   845-951   Spectrin repeat  
ENSXETP00000016062   4.6e-29   5719-5875   Spectrin repeat  
  1.65e-25   4841-5001   Spectrin repeat  
  1.96e-24   6172-6304   Spectrin repeat  
  4.19e-24   4952-5098   Spectrin repeat  
  1.02e-22   5958-6095   Spectrin repeat  
  6.27e-22   4406-4556   Spectrin repeat  
  6.94e-22   6307-6424   Spectrin repeat  
  2.36e-21   186-302   Spectrin repeat  
  4.19e-21   5277-5417   Spectrin repeat  
  4.71e-21   6093-6206   Spectrin repeat  
  4.92e-21   6373-6555   Spectrin repeat  
  2.4e-20   5516-5656   Spectrin repeat  
  1.22e-17   5170-5316   Spectrin repeat  
  2.64e-17   4073-4197   Spectrin repeat  
  1.44e-16   1100-1227,1254-1280   Spectrin repeat  
  1.7e-16   5841-5960   Spectrin repeat  
  0.00000000000000785   523-655   Spectrin repeat  
  0.0000000000000115   4624-4779   Spectrin repeat  
  0.00000000000009   4298-4417   Spectrin repeat  
  0.000000000000446   5432-5546   Spectrin repeat  
  0.00000000000115   3518-3627   Spectrin repeat  
  0.00000000000288   3639-3760   Spectrin repeat  
  0.0000000000129   3382-3509   Spectrin repeat  
  0.000000000177   3980-4090   Spectrin repeat  
  0.00000000157   3845-3946   Spectrin repeat  
  0.00000000249   3153-3270   Spectrin repeat  
  0.0000000273   4204-4326   Spectrin repeat  
  0.000000236   463-553   Spectrin repeat  
  0.000000811   3723-3840   Spectrin repeat  
  0.00157   2985-3138   Spectrin repeat  
  0.0112   920-1031   Spectrin repeat  
ENSXETP00000020056   0.0000000000000221   255-374   Spectrin repeat  
  0.000000000832   173-289   Spectrin repeat  
  0.0000034   126-197   Spectrin repeat  
  0.00131   605-715   Spectrin repeat  
  0.0648   469-598   Spectrin repeat  
ENSXETP00000023163   2.95e-27   965-1121   Spectrin repeat  
  1.08e-24   2022-2180   Spectrin repeat  
  8.23e-21   2601-2756   Spectrin repeat  
  7.59e-20   311-417   Spectrin repeat  
  4.84e-19   2716-2844   Spectrin repeat  
  8.23e-18   1181-1336   Spectrin repeat  
  1.83e-17   2866-3003   Spectrin repeat  
  3.66e-17   386-526   Spectrin repeat  
  1.44e-16   2431-2543   Spectrin repeat  
  3.14e-16   479-636   Spectrin repeat  
  0.0000000000000264   1596-1741   Spectrin repeat  
  0.0000000000000366   681-798   Spectrin repeat  
  0.000000000000746   747-902   Spectrin repeat  
  0.00000000000816   2172-2290   Spectrin repeat  
  0.0000000000168   1792-1930   Spectrin repeat  
  0.000000000111   2257-2387   Spectrin repeat  
  0.00000014   1503-1609   Spectrin repeat  
  0.00647   1308-1402   Spectrin repeat  
ENSXETP00000024926   3.53e-33   247-368   Spectrin repeat  
  4.73e-31   645-796   Spectrin repeat  
  9.29e-30   967-1122   Spectrin repeat  
  1.31e-28   1179-1332   Spectrin repeat  
  2.74e-28   860-1015   Spectrin repeat  
  6.48e-28   1603-1756   Spectrin repeat  
  2.75e-27   1495-1651   Spectrin repeat  
  1.51e-23   1814-1968   Spectrin repeat  
  6.6e-22   481-589   Spectrin repeat  
  6.02e-20   378-479   Spectrin repeat  
  6.33e-17   1340-1438   Spectrin repeat  
  0.00000000023   1974-2034   Spectrin repeat  
  0.00604   1127-1198   Spectrin repeat  
ENSXETP00000027049   2.28e-20   8035-8190   Spectrin repeat  
  1.58e-19   7815-7939   Spectrin repeat  
  3.8e-19   8412-8526   Spectrin repeat  
  8.23e-19   3319-3440   Spectrin repeat  
  2.02e-18   6954-7096   Spectrin repeat  
  4.45e-17   7407-7537   Spectrin repeat  
  2.45e-16   7078-7210   Spectrin repeat  
  3.6e-16   3869-4010   Spectrin repeat  
  4.25e-16   4489-4647   Spectrin repeat  
  0.00000000000000123   1612-1740   Spectrin repeat  
  0.0000000000000041   3102-3227   Spectrin repeat  
  0.000000000000366   6742-6883   Spectrin repeat  
  0.00000000000048   2662-2797   Spectrin repeat  
  0.00000000000108   8490-8634   Spectrin repeat  
  0.00000000000114   1392-1524   Spectrin repeat  
  0.00000000000149   1694-1848   Spectrin repeat  
  0.00000000000155   2444-2570   Spectrin repeat  
  0.00000000000202   7498-7648   Spectrin repeat  
  0.00000000000324   541-677   Spectrin repeat  
  0.00000000000518   7943-8053   Spectrin repeat  
  0.00000000000798   3789-3905   Spectrin repeat  
  0.0000000000108   4271-4427   Spectrin repeat  
  0.0000000000772   5695-5813   Spectrin repeat  
  0.0000000000984   7605-7756   Spectrin repeat  
  0.000000000122   2812-2930   Spectrin repeat  
  0.000000000212   5916-6051   Spectrin repeat  
  0.000000000266   7283-7400   Spectrin repeat  
  0.000000000561   1497-1606   Spectrin repeat  
  0.000000000576   5076-5194   Spectrin repeat  
  0.00000000458   2040-2173   Spectrin repeat  
  0.00000000509   854-996   Spectrin repeat  
  0.000000011   5460-5577   Spectrin repeat  
  0.0000000273   3014-3136   Spectrin repeat  
  0.0000000345   1069-1207   Spectrin repeat  
  0.000000137   6513-6620   Spectrin repeat  
  0.000000144   2338-2455   Spectrin repeat  
  0.00000471   4942-5054   Spectrin repeat  
  0.00000576   1957-2072   Spectrin repeat  
  0.00000662   3577-3680   Spectrin repeat  
  0.000017   6671-6780   Spectrin repeat  
  0.0000259   3655-3779   Spectrin repeat  
  0.0000266   4617-4754   Spectrin repeat  
  0.000034   5590-5674   Spectrin repeat  
  0.000388   3233-3309   Spectrin repeat  
  0.000719   6060-6174   Spectrin repeat  
  0.00127   3981-4114   Spectrin repeat  
  0.00127   3445-3519   Spectrin repeat  
  0.00137   2580-2652   Spectrin repeat  
  0.0022   5270-5364   Spectrin repeat  
  0.00824   6362-6464   Spectrin repeat  
  0.00981   4853-4970   Spectrin repeat  
  0.0964   6196-6258   Spectrin repeat  
ENSXETP00000027569   0.00000000000277   270-391   Spectrin repeat  
  0.000484   147-238   Spectrin repeat  
  0.00236   608-719   Spectrin repeat  
ENSXETP00000028143   3.13e-36   203-358   Spectrin repeat  
  2.06e-34   1776-1931   Spectrin repeat  
  2.22e-34   521-674   Spectrin repeat  
  3.4e-34   1239-1380   Spectrin repeat  
  1.7e-32   787-910   Spectrin repeat  
  2.33e-31   416-569   Spectrin repeat  
  6.36e-30   1584-1718   Spectrin repeat  
  3.02e-29   11-147   Spectrin repeat  
  3.96e-29   1347-1480   Spectrin repeat  
  2.62e-28   1881-2036   Spectrin repeat  
  3.27e-25   2043-2156   Spectrin repeat  
  1.73e-20   1505-1614   Spectrin repeat  
  1.04e-19   1004-1110   Spectrin repeat  
  2.22e-17   649-731   Spectrin repeat  
  8.16e-16   2158-2294   Spectrin repeat  
  0.0576   1159-1183   Spectrin repeat  
ENSXETP00000030523   3.4e-20   1054-1191   Spectrin repeat  
  5.64e-20   257-393   Spectrin repeat  
  8.46e-20   804-957   Spectrin repeat  
  3.21e-18   478-619   Spectrin repeat  
  0.0000000336   624-731   Spectrin repeat  
  0.000000144   171-287   Spectrin repeat  
ENSXETP00000030810   0.0000000000157   563-666   Spectrin repeat  
  0.0000000628   860-971   Spectrin repeat  
  0.000245   747-831   Spectrin repeat  
ENSXETP00000032931   0.00000000677   210-356   Spectrin repeat  
  0.0000000353   52-129   Spectrin repeat  
  0.0000838   412-564   Spectrin repeat  
  0.00544   130-253   Spectrin repeat  
ENSXETP00000034450   1.23e-31   3149-3300   Spectrin repeat  
  6.54e-31   267-387   Spectrin repeat  
  3.29e-30   2825-2980   Spectrin repeat  
  1.68e-29   1241-1392   Spectrin repeat  
  2.95e-28   2512-2668   Spectrin repeat  
  5.88e-27   573-708   Spectrin repeat  
  1.99e-26   2085-2238   Spectrin repeat  
  3.66e-26   2618-2766   Spectrin repeat  
  2.4e-25   1462-1604   Spectrin repeat  
  6.55e-25   3038-3193   Spectrin repeat  
  4.19e-24   1556-1705   Spectrin repeat  
  2.28e-23   3259-3403   Spectrin repeat  
  4.23e-22   834-966   Spectrin repeat  
  4.45e-22   1138-1287   Spectrin repeat  
  2.45e-21   1028-1183   Spectrin repeat  
  3.16e-21   2300-2450   Spectrin repeat  
  2.56e-18   1871-2027   Spectrin repeat  
  0.00000000000000615   715-776,829-867   Spectrin repeat  
  0.00000000000000733   495-611   Spectrin repeat  
  0.000000000000981   387-497   Spectrin repeat  
  0.000000000023   1791-1884   Spectrin repeat  
  0.0000000000236   1708-1823   Spectrin repeat  
  0.0000000245   3409-3471   Spectrin repeat  
  0.0201   2034-2086   Spectrin repeat  
ENSXETP00000036874   2.64e-28   302-421   Spectrin repeat  
  9.4e-27   1556-1712   Spectrin repeat  
  4.06e-24   820-968   Spectrin repeat  
  1.31e-22   1715-1820   Spectrin repeat  
  2.3e-22   925-1074   Spectrin repeat  
  2.82e-22   1241-1393   Spectrin repeat  
  7.86e-21   1876-2032   Spectrin repeat  
  1.51e-20   605-713   Spectrin repeat  
  0.00000000000000444   1079-1182   Spectrin repeat  
  0.00000000000000641   727-827   Spectrin repeat  
  0.0000000000403   2035-2096   Spectrin repeat  
  0.000000544   1392-1506   Spectrin repeat  
  0.00151   559-606   Spectrin repeat  
ENSXETP00000038879   1.92e-32   277-399   Spectrin repeat  
  2.09e-29   515-636   Spectrin repeat  
  7.59e-25   400-510   Spectrin repeat  
  1.14e-19   639-751   Spectrin repeat  
ENSXETP00000038881   4.71e-34   265-387   Spectrin repeat  
  3.66e-32   501-622   Spectrin repeat  
  1.31e-25   388-496   Spectrin repeat  
  3.02e-22   625-737   Spectrin repeat  
ENSXETP00000039422   0.000000000000158   192-312   Spectrin repeat  
  0.0000000000017   29-146   Spectrin repeat  
ENSXETP00000042013   0.0000000000000216   277-413   Spectrin repeat  
  0.000677   419-513   Spectrin repeat  
ENSXETP00000044138   0.00000000000187   329-453,524-544   Spectrin repeat  
  0.0000000000983   838-964,991-1018   Spectrin repeat  
  0.000125   193-274   Spectrin repeat  
  0.0684   764-834   Spectrin repeat  
ENSXETP00000048228   5.19e-23   2058-2203   Spectrin repeat  
  5.76e-19   339-446   Spectrin repeat  
  6.77e-19   2740-2870   Spectrin repeat  
  2.02e-17   524-663   Spectrin repeat  
  2.36e-17   2157-2311   Spectrin repeat  
  0.000000000000017   2914-3033   Spectrin repeat  
  0.0000000000000271   2516-2674   Spectrin repeat  
  0.0000000000000509   1206-1359   Spectrin repeat  
  0.000000000000235   1517-1672   Spectrin repeat  
  0.000000000000372   999-1108   Spectrin repeat  
  0.000000000000563   454-554   Spectrin repeat  
  0.000000008   1646-1772   Spectrin repeat  
  0.00000036   1118-1221   Spectrin repeat  
  0.000000985   1824-1957   Spectrin repeat  
  0.00000389   1330-1463   Spectrin repeat  
  0.00000677   931-1038   Spectrin repeat  
  0.000111   707-820   Spectrin repeat  
  0.00815   2468-2530   Spectrin repeat  
ENSXETP00000049402   6.55e-28   5909-6067   Spectrin repeat  
  1.83e-26   186-302   Spectrin repeat  
  8.23e-26   6127-6286   Spectrin repeat  
  7.2e-25   5031-5183   Spectrin repeat  
  9.12e-23   5710-5849   Spectrin repeat  
  1.7e-22   6392-6508   Spectrin repeat  
  3.66e-21   5479-5627   Spectrin repeat  
  4.71e-20   6500-6613   Spectrin repeat  
  2.26e-19   4597-4752   Spectrin repeat  
  4.57e-19   6571-6696,6726-6753   Spectrin repeat  
  6.54e-18   4266-4391   Spectrin repeat  
  9.29e-18   5186-5303   Spectrin repeat  
  3.27e-17   3819-3958   Spectrin repeat  
  2.16e-16   5361-5518   Spectrin repeat  
  3.53e-16   6256-6351   Spectrin repeat  
  0.00000000000000158   620-722   Spectrin repeat  
  0.00000000000000227   1153-1286,1313-1335   Spectrin repeat  
  0.0000000000000202   4810-4968   Spectrin repeat  
  0.000000000000082   4171-4282   Spectrin repeat  
  0.00000000000314   3568-3697   Spectrin repeat  
  0.0000000000108   5625-5738   Spectrin repeat  
  0.0000000000936   4395-4517   Spectrin repeat  
  0.00000000051   527-618   Spectrin repeat  
  0.00000000102   3708-3814   Spectrin repeat  
  0.00000000259   673-801,922-942   Spectrin repeat  
  0.00000000259   4017-4137   Spectrin repeat  
  0.0000000198   4507-4611   Spectrin repeat  
  0.000000113   3330-3447   Spectrin repeat  
  0.00176   3945-4028   Spectrin repeat  
  0.00907   985-1089   Spectrin repeat  
  0.0118   3093-3194   Spectrin repeat  
  0.0132   5308-5380   Spectrin repeat  
ENSXETP00000050357   0.000000000144   194-321   Spectrin repeat  
  0.00000000122   61-194   Spectrin repeat  
  0.0000000389   649-748   Spectrin repeat  
  0.0000117   494-612   Spectrin repeat  
  0.0863   810-864   Spectrin repeat  
ENSXETP00000052160   1.31e-17   854-985   Spectrin repeat  
  0.00000000000000336   597-756   Spectrin repeat  
  0.0000000112   177-295   Spectrin repeat  
  0.000000012   356-461   Spectrin repeat  
  0.0000193   488-631   Spectrin repeat  
ENSXETP00000053700   0.0000432   937-1082   Spectrin repeat  
  0.0815   861-957   Spectrin repeat  
ENSXETP00000056396   6.02e-23   238-354   Spectrin repeat  
  6.15e-16   547-679   Spectrin repeat  
  0.00000000000000216   1113-1249   Spectrin repeat  
  0.0000000000236   486-577   Spectrin repeat  
  0.00141   685-757   Spectrin repeat  
  0.00195   1000-1111   Spectrin repeat  
  0.0921   819-933   Spectrin repeat  
ENSXETP00000058869   0.00000000000156   455-603   Spectrin repeat  
  0.00036   245-361   Spectrin repeat  
  0.0154   335-444   Spectrin repeat  
ENSXETP00000059829   0.000000596   243-382   Spectrin repeat  
  0.00275   161-278   Spectrin repeat  
ENSXETP00000060066   0.00000576   408-505   Spectrin repeat  
ENSXETP00000064061   1.44e-32   298-419   Spectrin repeat  
  7.64e-29   604-742   Spectrin repeat  
  1.82e-28   1644-1797   Spectrin repeat  
  1.24e-27   1855-2009   Spectrin repeat  
  2.44e-26   906-1060   Spectrin repeat  
  4.25e-22   1231-1378   Spectrin repeat  
  5.5e-21   429-529   Spectrin repeat  
  2.88e-18   532-639   Spectrin repeat  
  4.84e-18   1062-1176   Spectrin repeat  
  3.31e-16   748-850   Spectrin repeat  
  3.8e-16   1351-1452   Spectrin repeat  
  0.0000000000249   1478-1593   Spectrin repeat  
  0.0000000000446   2015-2075   Spectrin repeat  
 
Weak hits:
ENSXETP00000003872   0.0475   67-158   Spectrin repeat  
ENSXETP00000009629   0.0432   208-322   Spectrin repeat  
ENSXETP00000016371   0.0403   1085-1174   Spectrin repeat  
ENSXETP00000023386   0.00611   399-468   Spectrin repeat  
ENSXETP00000023447   0.0396   195-297   Spectrin repeat  
ENSXETP00000027357   0.0014   185-282,351-377   Spectrin repeat  
ENSXETP00000035448   0.00475   261-358   Spectrin repeat  
ENSXETP00000035520   0.0518   316-430   Spectrin repeat  
ENSXETP00000037771   0.000115   25-73   Spectrin repeat  
ENSXETP00000039704   0.000528   277-394   Spectrin repeat  
ENSXETP00000046368   0.000987   104-192   Spectrin repeat  
ENSXETP00000055345   0.00187   268-371   Spectrin repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   649625 649625
No Yes Homo sapiens 76_38 Human 1347 188
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 76_3.1 Western gorilla 483 54
No Yes Pongo abelii 76_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 266 33
No Yes Papio anubis 76 Olive baboon 276 35
No Yes Macaca mulatta 76_1 Rhesus monkey 743 89
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 834 100
No Yes Otolemur garnettii 76_3 Small-eared galago 324 37
No Yes Microcebus murinus 76_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 76_5.0 Norway rat 406 50
No Yes Mus musculus 76_38 House mouse 985 134
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 300 39
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 310 37
No Yes Cavia porcellus 76_3 Domestic guinea pig 324 38
No Yes Oryctolagus cuniculus 76_2 Rabbit 301 38
No Yes Ochotona princeps 76 American pika 249 27
No Yes Tupaia belangeri 76 Northern tree shrew 240 28
No Yes Sus scrofa 76_10.2 Pig 279 49
No Yes Bos taurus 76_3.1 Cattle 335 37
No Yes Ovis aries 76_3.1 Sheep 309 40
No Yes Vicugna pacos 76_1 Alpaca 190 20
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 76_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 76_1 Giant panda 448 46
No Yes Canis familiaris 76_3.1 Dog 503 57
No Yes Felis catus 76_6.2 Domestic cat 320 52
No Yes Equus caballus 76_2 Horse 738 71
No Yes Myotis lucifugus 76_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 76_1 Large flying fox 289 32
No Yes Sorex araneus 76_1 European shrew 190 23
No Yes Erinaceus europaeus 76 Western European hedgehog 184 20
No Yes Procavia capensis 76_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 76_3 African savanna elephant 421 53
No Yes Echinops telfairi 76 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 391 58
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 76_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 355 47
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 360 39
No Yes Ornithorhynchus anatinus 76_5 Platypus 341 71
No Yes Saccoglossus kowalevskii v3.0   2079 67
No Yes Petromyzon marinus 76_7.0 Sea lamprey 172 32
No Yes Meleagris gallopavo 76_2 Turkey 299 37
No Yes Gallus gallus 76_4 Chicken 332 35
No Yes Anas platyrhynchos 76_1.0 Mallard 292 36
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 264 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 291 32
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 266 39
No Yes Anolis carolinensis 76_2.0 Green anole 299 35
No Yes Xenopus laevis African clawed frog 101 33
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 313 41
No Yes Latimeria chalumnae 76_1 Coelacanth 352 47
No Yes Lepisosteus oculatus 76 Spotted gar 489 49
No Yes Gadus morhua 76_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 397 56
No Yes Takifugu rubripes 76_4 Torafugu 1586 184
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 453 55
No Yes Oryzias latipes 76_1 Japanese medaka 351 49
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 349 45
No Yes Poecilia formosa 76 Amazon molly 366 42
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 456 53
No Yes Astyanax mexicanus 76 Mexican tetra 398 58
No Yes Danio rerio 76_9 Zebrafish 590 93
No Yes Oikopleura dioica   51 13
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 180 28
No Yes Ciona intestinalis 76 Vase tunicate 69 11
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 287 42
No Yes Adineta vaga   157 43
No Yes Octopus bimaculoides 280   368 41
No Yes Crassostrea gigas 22 Pacific oyster 185 21
No Yes Lottia gigantea Owl limpet 185 16
No Yes Helobdella robusta   96 16
No Yes Capitella sp. I   182 19
No Yes Danaus plexippus OGS1.0 Monarch butterfly 151 21
No Yes Heliconius melpomene Postman butterfly 125 15
No Yes Bombyx mori Domestic silkworm 132 44
No Yes Nasonia vitripennis Jewel wasp 131 8
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 389 45
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 159 18
No Yes Linepithema humile v1.1 Argentine ant 150 23
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 157 24
No Yes Solenopsis invicta v.2.2.3 Red fire ant 131 22
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 153 13
No Yes Atta cephalotes v1.1   153 20
No Yes Camponotus floridanus v3.3 Florida carpenter ant 172 16
No Yes Lucilia cuprina Australian sheep blowfly 149 15
No Yes Drosophila grimshawi 1.3   161 14
No Yes Drosophila willistoni 1.3   160 13
No Yes Drosophila pseudoobscura 2.13   152 13
No Yes Drosophila persimilis 1.3   114 19
No Yes Drosophila suzukii   150 12
No Yes Drosophila yakuba 1.3   160 12
No Yes Drosophila simulans 1.3   80 16
No Yes Drosophila sechellia 1.3   140 14
No Yes Drosophila melanogaster 76_5 Fruit fly 1379 76
No Yes Drosophila erecta 1.3   158 12
No Yes Drosophila ananassae 1.3   157 11
No Yes Drosophila virilis 1.2   125 14
No Yes Drosophila mojavensis 1.3   158 15
No Yes Megaselia scalaris 22   92 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 129 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 120 18
No Yes Anopheles darlingi 22 American malaria mosquito 91 11
No Yes Anopheles gambiae 49_3j African malaria mosquito 140 11
No Yes Tribolium castaneum 3.0 Red flour beetle 158 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 163 16
No Yes Acyrthosiphon pisum Pea aphid 147 16
No Yes Rhodnius prolixus 22   130 18
No Yes Daphnia pulex Common water flea 197 26
No Yes Strigamia maritima 22   161 13
No Yes Sarcoptes scabiei   112 9
No Yes Tetranychus urticae Two-spotted spider mite 91 23
No Yes Ixodes scapularis (Preliminary) Black-legged tick 56 11
No Yes Pristionchus pacificus   91 24
No Yes Meloidogyne incognita Southern root-knot nematode 48 12
No Yes Meloidogyne hapla   33 8
No Yes Onchocerca volvulus 22   100 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 149 17
No Yes Caenorhabditis japonica   107 12
No Yes Caenorhabditis brenneri   135 19
No Yes Caenorhabditis remanei   99 19
No Yes Caenorhabditis elegans 76_235 Roundworm 328 33
No Yes Caenorhabditis briggsae 2   91 11
No Yes Trichinella spiralis 22   102 13
No Yes Hymenolepis microstoma   93 13
No Yes Echinococcus multilocularis   94 14
No Yes Echinococcus granulosus   98 12
No Yes Taenia solium Pork tapeworm 84 16
No Yes Schistosoma mansoni   105 22
No Yes Mnemiopsis leidyi Sea walnut 61 15
No Yes Thelohanellus kitauei   3 1
No Yes Acropora digitifera v1.0   185 47
No Yes Nematostella vectensis 1.0 Starlet sea anemone 134 26
No Yes Hydra vulgaris   81 17
No Yes Amphimedon queenslandica   94 17
No Yes Trichoplax adhaerens   135 14
No Yes Proterospongia sp. ATCC 50818   79 12
No Yes Monosiga brevicollis   52 9
No Yes Sphaeroforma arctica JP610   4 1
No Yes Capsaspora owczarzaki ATCC 30864   20 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   3 2
No Yes Mortierella verticillata NRRL 6337   2 1
No Yes Phycomyces blakesleeanus   2 1
No Yes Rhizopus oryzae RA 99-880   6 4
No Yes Mucor circinelloides   4 2
No Yes Rhizomucor miehei CAU432   8 5
No Yes Sporisorium reilianum 22   2 1
No Yes Ustilago maydis   2 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   4 3
No Yes Piloderma croceum F 1598 v1.0   3 2
No Yes Serpula lacrymans var. lacrymans S7.9   2 1
No Yes Coniophora puteana   2 1
No Yes Hydnomerulius pinastri v2.0   2 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 1
No Yes Pisolithus microcarpus 441 v1.0   2 1
No Yes Pisolithus tinctorius Marx 270 v1.0   2 1
No Yes Scleroderma citrinum Foug A v1.0   3 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 1
No Yes Pleurotus ostreatus Oyster mushroom 2 1
No Yes Amanita thiersii Skay4041 v1.0   2 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 1
No Yes Galerina marginata v1.0   2 1
No Yes Hebeloma cylindrosporum h7 v2.0   2 1
No Yes Laccaria bicolor S238N-H82   2 1
No Yes Agaricus bisporus var. bisporus   3 2
No Yes Schizophyllum commune   2 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 1
No Yes Heterobasidion annosum   2 1
No Yes Gloeophyllum trabeumv1.0   2 1
No Yes Punctularia strigosozonata v1.0   2 1
No Yes Sebacina vermifera MAFF 305830 v1.0   2 1
No Yes Fomitiporia mediterranea v1.0   2 1
No Yes Tulasnella calospora AL13/4D v1.0   4 3
No Yes Postia placenta   3 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 1
No Yes Fomitopsis pinicolav1.0   2 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 1
No Yes Phanerochaete chrysosporium RP-78 2.1   2 1
No Yes Dichomitus squalens   2 1
No Yes Trametes versicolor v1.0   2 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 1
No Yes Magnaporthe poae ATCC 64411 22   2 1
No Yes Magnaporthe grisea 70-15   3 2
No Yes Podospora anserina   2 1
No Yes Sporotrichum thermophile ATCC 42464   3 2
No Yes Thielavia terrestris NRRL 8126   2 1
No Yes Chaetomium globosum CBS 148.51   2 1
No Yes Neurospora tetrasperma   2 1
No Yes Neurospora discreta FGSC 8579   2 1
No Yes Neurospora crassa OR74A   2 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 1
No Yes Verticillium albo-atrum VaMs.102   2 1
No Yes Verticillium dahliae VdLs.17   2 1
No Yes Acremonium alcalophilumv 1.0   2 1
No Yes Glomerella graminicola 22   2 1
No Yes Fusarium graminearum   3 2
No Yes Nectria haematococca mpVI   2 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 2
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 1
No Yes Trichoderma atroviride   2 1
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   3 2
No Yes Trichoderma virens Gv29-8   2 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 1
No Yes Botrytis cinerea B05.10   3 2
No Yes Sclerotinia sclerotiorum   2 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   2 1
No Yes Leptosphaeria maculans 22   2 1
No Yes Setosphaeria turcica v1.0   2 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 1
No Yes Cochliobolus victoriae FI3 v1.0   2 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 3 2
No Yes Alternaria brassicicola   2 1
No Yes Cochliobolus lunatus m118 v2.0   2 1
No Yes Pyrenophora teres f. teres 22   2 1
No Yes Pyrenophora tritici-repentis   2 1
No Yes Stagonospora nodorum   2 1
No Yes Mycosphaerella graminicola IPO323   2 1
No Yes Zasmidium cellare ATCC 36951 v1.0   4 3
No Yes Dothistroma septosporum   3 2
No Yes Septoria musiva v1.0   2 1
No Yes Mycosphaerella fijiensis CIRAD86   2 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 1
No Yes Paracoccidioides brasiliensis Pb18   2 1
No Yes Coccidioides posadasii RMSCC 3488   2 1
No Yes Coccidioides immitis RS   2 1
No Yes Ajellomyces dermatitidis SLH14081   2 1
No Yes Histoplasma capsulatum class NAmI strain WU24   2 1
No Yes Microsporum canis CBS 113480   2 1
No Yes Trichophyton equinum CBS 127.97   2 1
No Yes Trichophyton verrucosum HKI 0517   2 1
No Yes Arthroderma benhamiae CBS 112371   2 1
No Yes Trichophyton tonsurans CBS 112818   2 1
No Yes Trichophyton rubrum CBS 118892   2 1
No Yes Uncinocarpus reesii 1704   2 1
No Yes Aspergillus zonatus v1.0   2 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 1
No Yes Penicillium chrysogenum v1.0   2 1
No Yes Aspergillus acidus v1.0   2 1
No Yes Aspergillus fumigatus Af293   2 1
No Yes Aspergillus brasiliensis v1.0   2 1
No Yes Aspergillus nidulans FGSC A4   2 1
No Yes Aspergillus sydowii v1.0   2 1
No Yes Aspergillus versicolor v1.0   2 1
No Yes Aspergillus glaucus   2 1
No Yes Aspergillus carbonarius ITEM 5010   2 1
No Yes Neosartorya fischeri NRRL 181   2 1
No Yes Aspergillus terreus NIH2624   2 1
No Yes Aspergillus tubingensis v1.0   2 1
No Yes Aspergillus wentii v1.0   2 1
No Yes Aspergillus oryzae RIB40   2 1
No Yes Aspergillus niger 22   2 1
No Yes Aspergillus niger ATCC 1015   2 1
No Yes Aspergillus flavus NRRL3357   2 1
No Yes Aspergillus clavatus NRRL 1   2 1
No Yes Penicillium marneffei ATCC 18224   2 1
No Yes Tuber melanosporum Mel28 22   2 1
No Yes Tuber melanosporum Vittad Perigord truffle 2 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Yarrowia lipolytica CLIB122   2 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 3
No Yes Spizellomyces punctatus DAOM BR117   2 1
No Yes Dictyostelium discoideum   4 1
No Yes Dictyostelium purpureum   4 1
No Yes Entamoeba dispar 1.2   3 3
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   2 1
No Yes Capsella rubella v183   1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   6 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Trypanosoma vivax   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   2 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   2 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Perkinsus marinus ATCC 50983   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Naegleria gruberi   3 2
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Thermosipho africanus TCF52B   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 285 54
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 914 52
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 193 16
No Yes Ascaris suum Victoria/Ghent Pig roundworm 98 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 240 26
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   2 1
No Yes Coccidioides posadasii str. Silveira   2 1
No Yes Coccidioides immitis RMSCC 3703   2 1
No Yes Coccidioides immitis RMSCC 2394   2 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   2 1
No Yes Histoplasma capsulatum H143   2 1
No Yes Histoplasma capsulatum H88   2 1
No Yes Histoplasma capsulatum G186AR   2 1
No Yes Aspergillus fumigatus A1163   2 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   2 1
No Yes Batrachochytrium dendrobatidis JAM81   2 1
No Yes Thermus thermophilus HB8   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Coprococcus catus GD/7   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   3 3
No Yes Shigella dysenteriae 1617   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1579 208
No Yes Homo sapiens (NCBI version) Human 646 76
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 307 33
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 109 13
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 106 42
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 97 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Homo sapiens 69_37 Human 400 38
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 69_3.1 Western gorilla 282 36
No Yes Pongo abelii 69_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 245 32
No Yes Macaca mulatta 69_1 Rhesus monkey 304 35
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 33
No Yes Otolemur garnettii 69_3 Small-eared galago 312 34
No Yes Microcebus murinus 69_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 69_3.4 Norway rat 297 34
No Yes Mus musculus 69_38 House mouse 266 34
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 288 33
No Yes Cavia porcellus 69_3 Domestic guinea pig 309 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 39
No Yes Ochotona princeps 69 American pika 249 27
No Yes Tupaia belangeri 69 Northern tree shrew 240 28
No Yes Sus scrofa 69_10.2 Pig 232 39
No Yes Bos taurus 69_3.1 Cattle 304 34
No Yes Vicugna pacos 69_1 Alpaca 190 20
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 69_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 69_1 Giant panda 309 36
No Yes Canis familiaris 69_3.1 Dog 316 35
No Yes Felis catus 69 Domestic cat 181 28
No Yes Equus caballus 69_2 Horse 323 35
No Yes Myotis lucifugus 69_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 69_1 Large flying fox 289 32
No Yes Sorex araneus 69_1 European shrew 190 23
No Yes Erinaceus europaeus 69 Western European hedgehog 184 20
No Yes Procavia capensis 69_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 69_3 African savanna elephant 262 34
No Yes Echinops telfairi 69 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 205 25
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 69_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 250 34
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 325 34
No Yes Ornithorhynchus anatinus 69_5 Platypus 306 66
No Yes Petromyzon marinus 69_7.0 Sea lamprey 157 28
No Yes Meleagris gallopavo 69_2 Turkey 262 28
No Yes Gallus gallus 69_2 Chicken 284 29
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 257 33
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 233 33
No Yes Anolis carolinensis 69_2.0 Green anole 291 39
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 289 33
No Yes Latimeria chalumnae 69_1 Coelacanth 273 37
No Yes Gadus morhua 69_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 300 41
No Yes Takifugu rubripes 69_4 Torafugu 381 43
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 372 42
No Yes Oryzias latipes 69_1 Japanese medaka 317 38
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 349 45
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 373 40
No Yes Danio rerio 69_9 Zebrafish 340 50
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 24 7
No Yes Ciona intestinalis 69 Vase tunicate 65 10
No Yes Drosophila melanogaster 69_5 Fruit fly 124 10
No Yes Caenorhabditis elegans 69_215 Roundworm 103 11
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   3 3
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   5 5
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   387404 34306
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   5 5
No Yes Protozoadb 2010_08 (Protozoadb)   14 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10877 1400
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   159518 21102
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   39 34
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   22 11
No Yes Protein Data Bank (all PDB sequenc)   131 69
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   213 213
No Yes TargetDB (Targets)   200 79
No Yes UniProt viral sequences (Viral)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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