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  Home > Genomes > Pelodiscus sinensis 76_1.0 > Growth factor receptor domain domains


Growth factor receptor domain superfamily domain assignments
in
Pelodiscus sinensis 76_1.0

Assignment details

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Pelodiscus sinensis 76_1.0 has 207 significant domains in 119 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPSIP00000002077   0.0000000401   272-343,381-401   Growth factor receptor domain  
ENSPSIP00000002138   0.0000000000000108   166-303   Growth factor receptor domain  
ENSPSIP00000002539   0.000000000000004   24-97   Growth factor receptor domain  
ENSPSIP00000002760   0.0000000104   510-597   Growth factor receptor domain  
ENSPSIP00000002933   0.000000000895   841-958   Growth factor receptor domain  
  0.0000000133   444-520,837-878   Growth factor receptor domain  
ENSPSIP00000002934   3.3e-17   444-520,777-826   Growth factor receptor domain  
  0.00000000091   890-1008   Growth factor receptor domain  
ENSPSIP00000003104   2.28e-18   119-254   Growth factor receptor domain  
  0.0000000000173   220-340   Growth factor receptor domain  
  0.000439   37-146   Growth factor receptor domain  
ENSPSIP00000003205   0.0000000000000115   247-369   Growth factor receptor domain  
ENSPSIP00000003206   0.0000000000000706   220-337   Growth factor receptor domain  
ENSPSIP00000003410   1.36e-19   33-114   Growth factor receptor domain  
ENSPSIP00000003519   7.38e-20   27-108   Growth factor receptor domain  
ENSPSIP00000003779   1.73e-17   202-327   Growth factor receptor domain  
  0.000000000000173   110-238   Growth factor receptor domain  
  0.0000000000337   4-111   Growth factor receptor domain  
  0.000000000738   401-531   Growth factor receptor domain  
ENSPSIP00000004294   0.00000000000612   51-118   Growth factor receptor domain  
ENSPSIP00000004400   0.000000000000282   106-227   Growth factor receptor domain  
ENSPSIP00000004538   0.0000000000392   284-415   Growth factor receptor domain  
ENSPSIP00000004568   0.0000255   245-309   Growth factor receptor domain  
ENSPSIP00000004789   1.31e-21   478-612   Growth factor receptor domain  
  3.62e-18   161-307   Growth factor receptor domain  
ENSPSIP00000004797   1.21e-21   454-588   Growth factor receptor domain  
  3.62e-18   137-283   Growth factor receptor domain  
ENSPSIP00000004840   0.000000000000863   1082-1195   Growth factor receptor domain  
  0.00000000000298   969-1087   Growth factor receptor domain  
  0.0000000000133   762-905   Growth factor receptor domain  
  0.00173   43-184,230-247   Growth factor receptor domain  
ENSPSIP00000004911   0.00000000000146   467-597   Growth factor receptor domain  
  0.00000000133   776-889   Growth factor receptor domain  
ENSPSIP00000005142   0.000000000014   44-113   Growth factor receptor domain  
ENSPSIP00000005145   0.0000000000144   51-120   Growth factor receptor domain  
ENSPSIP00000005299   0.0000353   1432-1509   Growth factor receptor domain  
ENSPSIP00000005314   0.00000331   248-320   Growth factor receptor domain  
ENSPSIP00000005339   0.0000195   229-300,336-359   Growth factor receptor domain  
ENSPSIP00000005666   0.00000000000879   223-343   Growth factor receptor domain  
ENSPSIP00000005864   6.91e-18   278-402   Growth factor receptor domain  
  1.88e-17   28-161   Growth factor receptor domain  
  0.00000000214   616-776   Growth factor receptor domain  
ENSPSIP00000005872   6.43e-18   255-379   Growth factor receptor domain  
  2.98e-17   6-138   Growth factor receptor domain  
  0.00000001   587-699   Growth factor receptor domain  
  0.0182   710-766   Growth factor receptor domain  
ENSPSIP00000006130   0.000000132   98-232   Growth factor receptor domain  
  0.000000565   11-138   Growth factor receptor domain  
ENSPSIP00000006370   0.0000722   22-121,425-479   Growth factor receptor domain  
ENSPSIP00000006718   1.57e-23   2804-2895,3151-3212   Growth factor receptor domain  
  4.47e-16   1051-1140,1414-1458   Growth factor receptor domain  
  0.00000000000000549   6-79,356-403   Growth factor receptor domain  
  0.0000000000173   3655-3672,3713-3769,4049-4116   Growth factor receptor domain  
ENSPSIP00000006926   0.00000000000596   218-344   Growth factor receptor domain  
ENSPSIP00000006964   4.71e-18   298-339,584-683   Growth factor receptor domain  
  0.0000000155   676-755,791-804,1114-1158   Growth factor receptor domain  
ENSPSIP00000007180   0.000000000392   10-35,78-155   Growth factor receptor domain  
  0.0018   381-520   Growth factor receptor domain  
ENSPSIP00000007383   0.00000000000000424   484-606   Growth factor receptor domain  
ENSPSIP00000007589   0.0000436   416-492   Growth factor receptor domain  
ENSPSIP00000007742   6.91e-16   1027-1151   Growth factor receptor domain  
  0.0000000000000565   897-1027   Growth factor receptor domain  
  0.00000000124   1524-1610   Growth factor receptor domain  
ENSPSIP00000007775   0.00000204   453-560   Growth factor receptor domain  
ENSPSIP00000007811   0.0000022   7-72   Growth factor receptor domain  
ENSPSIP00000007812   3.92e-16   1103-1227   Growth factor receptor domain  
  0.0000000013   1600-1686   Growth factor receptor domain  
ENSPSIP00000008086   0.00000000000188   205-285,557-608   Growth factor receptor domain  
ENSPSIP00000008430   0.000000000298   70-183   Growth factor receptor domain  
ENSPSIP00000008505   2.51e-16   37-151   Growth factor receptor domain  
ENSPSIP00000008520   0.0000000000439   116-231   Growth factor receptor domain  
ENSPSIP00000008526   0.000000000596   12-148   Growth factor receptor domain  
  0.00000000111   105-224   Growth factor receptor domain  
ENSPSIP00000008738   0.000022   330-406   Growth factor receptor domain  
ENSPSIP00000008837   0.0000628   261-328,361-380   Growth factor receptor domain  
ENSPSIP00000009399   0.000000000722   24-101   Growth factor receptor domain  
ENSPSIP00000009504   0.000000000000439   56-133   Growth factor receptor domain  
ENSPSIP00000009537   0.000000000000033   404-533   Growth factor receptor domain  
  0.0000000022   620-752   Growth factor receptor domain  
ENSPSIP00000009877   0.0000000000104   32-111   Growth factor receptor domain  
ENSPSIP00000010256   0.0000000000361   140-260   Growth factor receptor domain  
  0.0000000000565   220-371   Growth factor receptor domain  
ENSPSIP00000010445   0.000000008   568-608,872-908,1176-1235   Growth factor receptor domain  
ENSPSIP00000010892   0.00000000000895   328-409,673-723   Growth factor receptor domain  
ENSPSIP00000010919   0.0000000000000204   398-523   Growth factor receptor domain  
ENSPSIP00000010989   0.000000000439   478-589   Growth factor receptor domain  
ENSPSIP00000011013   0.00000000144   284-436   Growth factor receptor domain  
ENSPSIP00000011635   0.0000000000455   58-186   Growth factor receptor domain  
ENSPSIP00000011960   0.00000000173   2-131   Growth factor receptor domain  
  0.000000565   290-425   Growth factor receptor domain  
ENSPSIP00000012101   0.0000000000000596   37-123   Growth factor receptor domain  
ENSPSIP00000012213   0.0000000000000403   962-1093   Growth factor receptor domain  
  0.00000000000157   1162-1304   Growth factor receptor domain  
ENSPSIP00000012260   2.36e-17   38-144   Growth factor receptor domain  
ENSPSIP00000012293   0.00000000000157   299-432   Growth factor receptor domain  
  0.00000000000596   120-250   Growth factor receptor domain  
  0.000000000188   438-584   Growth factor receptor domain  
ENSPSIP00000013512   0.0000204   203-329   Growth factor receptor domain  
  0.000188   820-947   Growth factor receptor domain  
ENSPSIP00000013768   0.00000000345   251-388   Growth factor receptor domain  
  0.000322   560-617   Growth factor receptor domain  
ENSPSIP00000013774   0.00000000345   276-413   Growth factor receptor domain  
  0.00033   585-642   Growth factor receptor domain  
ENSPSIP00000014116   0.0000000000000173   471-605   Growth factor receptor domain  
  0.00000000000173   367-488   Growth factor receptor domain  
  0.000000000008   703-833   Growth factor receptor domain  
  0.0000000000494   275-413   Growth factor receptor domain  
  0.00000000022   158-292   Growth factor receptor domain  
ENSPSIP00000014206   0.000000000000173   119-253   Growth factor receptor domain  
ENSPSIP00000014271   0.00000769   74-147,496-531   Growth factor receptor domain  
ENSPSIP00000014288   0.00000628   65-138,486-521   Growth factor receptor domain  
ENSPSIP00000014348   0.000000161   258-329,367-388   Growth factor receptor domain  
ENSPSIP00000014581   0.0000000298   1206-1337   Growth factor receptor domain  
ENSPSIP00000014717   0.00000392   141-249   Growth factor receptor domain  
ENSPSIP00000014935   8.95e-19   1846-1973   Growth factor receptor domain  
  3.45e-17   2130-2258   Growth factor receptor domain  
  3.77e-17   447-572   Growth factor receptor domain  
  7.85e-17   710-852   Growth factor receptor domain  
  1.18e-16   2442-2574   Growth factor receptor domain  
  3.61e-16   532-653   Growth factor receptor domain  
  3.85e-16   1149-1291   Growth factor receptor domain  
  0.00000000000000335   1315-1450   Growth factor receptor domain  
  0.000000000000102   1025-1153   Growth factor receptor domain  
  0.000000000000455   2571-2687   Growth factor receptor domain  
  0.0000000022   2251-2333,2363-2444   Growth factor receptor domain  
ENSPSIP00000014937   0.0000000785   242-370   Growth factor receptor domain  
ENSPSIP00000015029   5.81e-17   171-291   Growth factor receptor domain  
  0.0000000000000157   29-70,114-217   Growth factor receptor domain  
ENSPSIP00000015081   6.28e-17   278-403   Growth factor receptor domain  
  1.73e-16   401-520   Growth factor receptor domain  
  0.000000000116   522-647   Growth factor receptor domain  
ENSPSIP00000015087   4.08e-17   362-482   Growth factor receptor domain  
  2.98e-16   239-359   Growth factor receptor domain  
  3.77e-16   484-605   Growth factor receptor domain  
  4.08e-16   607-728   Growth factor receptor domain  
  0.0000000000157   731-855   Growth factor receptor domain  
ENSPSIP00000015501   0.000000000000392   36-113   Growth factor receptor domain  
ENSPSIP00000015536   0.00000000000000129   36-113   Growth factor receptor domain  
ENSPSIP00000015593   2.14e-28   583-748   Growth factor receptor domain  
  1.17e-18   705-823   Growth factor receptor domain  
ENSPSIP00000015612   3.93e-26   600-755   Growth factor receptor domain  
  1.57e-18   721-838   Growth factor receptor domain  
ENSPSIP00000015738   0.00000000000157   28-103   Growth factor receptor domain  
ENSPSIP00000015787   1.05e-20   448-575   Growth factor receptor domain  
  1.57e-18   127-272   Growth factor receptor domain  
ENSPSIP00000015856   3.92e-19   343-470   Growth factor receptor domain  
  1.88e-17   60-196   Growth factor receptor domain  
  0.000000101   743-862   Growth factor receptor domain  
  0.000149   682-784   Growth factor receptor domain  
ENSPSIP00000015899   1.73e-17   217-339   Growth factor receptor domain  
ENSPSIP00000015903   1.88e-17   216-338   Growth factor receptor domain  
ENSPSIP00000015943   0.0000000113   175-310   Growth factor receptor domain  
ENSPSIP00000016011   0.0000000000267   459-566   Growth factor receptor domain  
ENSPSIP00000016012   0.0000000000722   269-405   Growth factor receptor domain  
ENSPSIP00000016117   7.02e-31   122-277   Growth factor receptor domain  
  9.24e-29   263-429   Growth factor receptor domain  
  2.69e-23   515-672   Growth factor receptor domain  
  8.52e-18   421-538   Growth factor receptor domain  
  5.97e-17   33-136   Growth factor receptor domain  
ENSPSIP00000016156   3.4e-30   634-796   Growth factor receptor domain  
  2.92e-24   738-895   Growth factor receptor domain  
ENSPSIP00000016230   1.32e-16   132-252   Growth factor receptor domain  
  0.00000000204   15-70,104-160   Growth factor receptor domain  
ENSPSIP00000016479   0.0000000000000102   4882-5027   Growth factor receptor domain  
  0.00000000000251   5025-5145   Growth factor receptor domain  
  0.00000000000345   5201-5316   Growth factor receptor domain  
ENSPSIP00000016490   2.51e-17   1205-1331   Growth factor receptor domain  
ENSPSIP00000016497   0.0000000000000102   4890-5035   Growth factor receptor domain  
  0.00000000000251   5033-5153   Growth factor receptor domain  
  0.00000000000345   5209-5324   Growth factor receptor domain  
ENSPSIP00000016816   0.00000000102   2-60   Growth factor receptor domain  
ENSPSIP00000016845   0.00000000000659   27-106   Growth factor receptor domain  
ENSPSIP00000016957   0.0000000000000188   166-325   Growth factor receptor domain  
ENSPSIP00000017170   7.61e-18   2663-2794   Growth factor receptor domain  
  3.3e-17   468-596   Growth factor receptor domain  
  4.24e-17   3027-3161   Growth factor receptor domain  
  7.22e-17   731-873   Growth factor receptor domain  
  1.88e-16   1924-2059   Growth factor receptor domain  
  3.53e-16   2215-2350   Growth factor receptor domain  
  0.0000000000000022   3349-3477   Growth factor receptor domain  
  0.00000000000000722   553-674   Growth factor receptor domain  
  0.00000000000000989   2054-2191   Growth factor receptor domain  
  0.000000000000267   3120-3236   Growth factor receptor domain  
  0.00000000000314   3474-3590   Growth factor receptor domain  
  0.000000000628   242-359   Growth factor receptor domain  
ENSPSIP00000017267   8.89e-17   914-1048   Growth factor receptor domain  
  0.000000000173   732-881   Growth factor receptor domain  
  0.0518   456-562,614-658   Growth factor receptor domain  
ENSPSIP00000017803   0.00000000000000132   226-242,277-346,611-667   Growth factor receptor domain  
  0.0000000000408   1967-2020,2306-2343,2604-2668   Growth factor receptor domain  
ENSPSIP00000017892   0.000000000148   11-126   Growth factor receptor domain  
ENSPSIP00000018237   0.00000000000000769   4-109   Growth factor receptor domain  
ENSPSIP00000018300   0.0000000105   146-290   Growth factor receptor domain  
ENSPSIP00000018610   0.000000565   31-80   Growth factor receptor domain  
ENSPSIP00000018800   0.00000000000549   841-1003   Growth factor receptor domain  
  0.0000000000282   667-784   Growth factor receptor domain  
  0.000000000102   1049-1168   Growth factor receptor domain  
  0.000000000377   1550-1646   Growth factor receptor domain  
ENSPSIP00000018861   0.0000000000738   364-491   Growth factor receptor domain  
  0.00000000105   233-356   Growth factor receptor domain  
  0.00000000154   2-123   Growth factor receptor domain  
ENSPSIP00000018903   0.000000103   539-621   Growth factor receptor domain  
  0.00000119   42-72,229-370   Growth factor receptor domain  
ENSPSIP00000018993   0.0000000565   901-1029   Growth factor receptor domain  
ENSPSIP00000019243   0.00000000000989   233-337   Growth factor receptor domain  
ENSPSIP00000019364   0.0000000942   308-379,420-435   Growth factor receptor domain  
ENSPSIP00000019371   0.0000000994   266-337,378-393   Growth factor receptor domain  
ENSPSIP00000019489   0.000000000000565   356-431,687-736   Growth factor receptor domain  
ENSPSIP00000020082   6.28e-16   137-290   Growth factor receptor domain  
ENSPSIP00000020259   4.24e-17   339-479   Growth factor receptor domain  
  0.0000000000204   181-305   Growth factor receptor domain  
  0.00000000502   446-586   Growth factor receptor domain  
ENSPSIP00000020263   6.91e-16   356-479   Growth factor receptor domain  
  0.000000000000235   178-260,291-365   Growth factor receptor domain  
ENSPSIP00000020386   0.000000000000143   117-244   Growth factor receptor domain  
ENSPSIP00000020387   0.000000000000143   118-245   Growth factor receptor domain  
 
Weak hits:
ENSPSIP00000001068   0.0816   77-110,225-230   Growth factor receptor domain  
ENSPSIP00000002319   0.000502   77-95,158-184,253-298   Growth factor receptor domain  
ENSPSIP00000002407   0.000863   262-333,369-387   Growth factor receptor domain  
ENSPSIP00000002442   0.000154   9-112   Growth factor receptor domain  
ENSPSIP00000002685   0.000549   17-143   Growth factor receptor domain  
ENSPSIP00000002980   0.000419   251-319,355-373   Growth factor receptor domain  
ENSPSIP00000002983   0.000366   182-250,286-304   Growth factor receptor domain  
ENSPSIP00000003857   0.0115   299-365   Growth factor receptor domain  
ENSPSIP00000004386   0.00283   4-61   Growth factor receptor domain  
ENSPSIP00000004387   0.000392   64-193   Growth factor receptor domain  
ENSPSIP00000005217   0.0667   37-172   Growth factor receptor domain  
ENSPSIP00000005223   0.0942   66-205   Growth factor receptor domain  
ENSPSIP00000007384   0.000403   13-72   Growth factor receptor domain  
ENSPSIP00000007639   0.0785   39-59,129-171,214-222   Growth factor receptor domain  
ENSPSIP00000007758   0.0942   545-605,681-702   Growth factor receptor domain  
ENSPSIP00000008661   0.00157   374-405,501-604   Growth factor receptor domain  
ENSPSIP00000008669   0.00361   309-340,436-539   Growth factor receptor domain  
ENSPSIP00000009422   0.000282   6-136   Growth factor receptor domain  
ENSPSIP00000010102   0.000106   307-403   Growth factor receptor domain  
ENSPSIP00000010634   0.0439   58-68,100-141,217-230,583-620   Growth factor receptor domain  
ENSPSIP00000012186   0.0549   540-597,659-676   Growth factor receptor domain  
ENSPSIP00000013092   0.0267   55-129   Growth factor receptor domain  
ENSPSIP00000013381   0.0152   351-412   Growth factor receptor domain  
ENSPSIP00000013526   0.000596   218-335   Growth factor receptor domain  
ENSPSIP00000013540   0.000596   218-335   Growth factor receptor domain  
ENSPSIP00000013582   0.00115   781-908   Growth factor receptor domain  
ENSPSIP00000014651   0.0225   326-435   Growth factor receptor domain  
ENSPSIP00000014894   0.0267   211-351   Growth factor receptor domain  
ENSPSIP00000015136   0.000188   89-189,218-273   Growth factor receptor domain  
ENSPSIP00000015337   0.0345   14-90   Growth factor receptor domain  
ENSPSIP00000016110   0.000628   410-462   Growth factor receptor domain  
ENSPSIP00000017865   0.00089   288-356,407-415   Growth factor receptor domain  
ENSPSIP00000019656   0.00416   430-459,532-540,571-603,724-761   Growth factor receptor domain  
ENSPSIP00000019670   0.0149   429-458,529-537,571-603,721-758   Growth factor receptor domain  
ENSPSIP00000020171   0.000222   116-179,225-240   Growth factor receptor domain  
ENSPSIP00000020185   0.000254   214-277,323-338   Growth factor receptor domain  
ENSPSIP00000020478   0.00053   2-46,92-106   Growth factor receptor domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   344964 344964
No Yes Homo sapiens 76_38 Human 736 406
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 116
No Yes Gorilla gorilla 76_3.1 Western gorilla 331 175
No Yes Pongo abelii 76_2 Sumatran orangutan 217 112
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 219 113
No Yes Papio anubis 76 Olive baboon 254 145
No Yes Macaca mulatta 76_1 Rhesus monkey 342 178
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 456 275
No Yes Otolemur garnettii 76_3 Small-eared galago 232 124
No Yes Microcebus murinus 76_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 76_5.0 Norway rat 236 144
No Yes Mus musculus 76_38 House mouse 411 220
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 222 117
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 198 100
No Yes Cavia porcellus 76_3 Domestic guinea pig 196 104
No Yes Oryctolagus cuniculus 76_2 Rabbit 219 109
No Yes Ochotona princeps 76 American pika 169 92
No Yes Tupaia belangeri 76 Northern tree shrew 116 76
No Yes Sus scrofa 76_10.2 Pig 230 126
No Yes Bos taurus 76_3.1 Cattle 240 119
No Yes Ovis aries 76_3.1 Sheep 242 123
No Yes Vicugna pacos 76_1 Alpaca 100 55
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 197 107
No Yes Mustela putorius furo 76_1.0 Domestic ferret 256 126
No Yes Ailuropoda melanoleuca 76_1 Giant panda 260 133
No Yes Canis familiaris 76_3.1 Dog 344 164
No Yes Felis catus 76_6.2 Domestic cat 217 120
No Yes Equus caballus 76_2 Horse 346 154
No Yes Myotis lucifugus 76_2.0 Little brown bat 186 110
No Yes Pteropus vampyrus 76_1 Large flying fox 205 105
No Yes Sorex araneus 76_1 European shrew 99 59
No Yes Erinaceus europaeus 76 Western European hedgehog 123 72
No Yes Procavia capensis 76_1 Cape rock hyrax 162 94
No Yes Loxodonta africana 76_3 African savanna elephant 283 146
No Yes Echinops telfairi 76 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 222 131
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 76_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 208 123
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 237 126
No Yes Ornithorhynchus anatinus 76_5 Platypus 178 109
No Yes Saccoglossus kowalevskii v3.0   846 213
No Yes Petromyzon marinus 76_7.0 Sea lamprey 105 61
No Yes Meleagris gallopavo 76_2 Turkey 187 109
No Yes Gallus gallus 76_4 Chicken 209 112
No Yes Anas platyrhynchos 76_1.0 Mallard 173 87
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 187 102
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 217 115
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 207 119
No Yes Anolis carolinensis 76_2.0 Green anole 231 121
No Yes Xenopus laevis African clawed frog 285 201
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 269 158
No Yes Latimeria chalumnae 76_1 Coelacanth 310 166
No Yes Lepisosteus oculatus 76 Spotted gar 377 184
No Yes Gadus morhua 76_1 Atlantic cod 269 156
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 401 182
No Yes Takifugu rubripes 76_4 Torafugu 1082 620
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 316 186
No Yes Oryzias latipes 76_1 Japanese medaka 328 195
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 285 159
No Yes Poecilia formosa 76 Amazon molly 306 161
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 357 209
No Yes Astyanax mexicanus 76 Mexican tetra 284 174
No Yes Danio rerio 76_9 Zebrafish 479 256
No Yes Oikopleura dioica   254 92
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 820 276
No Yes Ciona intestinalis 76 Vase tunicate 203 93
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 785 270
No Yes Adineta vaga   119 73
No Yes Octopus bimaculoides 280   179 106
No Yes Crassostrea gigas 22 Pacific oyster 461 216
No Yes Lottia gigantea Owl limpet 168 101
No Yes Helobdella robusta   167 88
No Yes Capitella sp. I   333 186
No Yes Danaus plexippus OGS1.0 Monarch butterfly 72 33
No Yes Heliconius melpomene Postman butterfly 64 28
No Yes Bombyx mori Domestic silkworm 60 36
No Yes Nasonia vitripennis Jewel wasp 49 19
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 303 137
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 79 28
No Yes Linepithema humile v1.1 Argentine ant 47 28
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 49 26
No Yes Solenopsis invicta v.2.2.3 Red fire ant 31 25
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 82 31
No Yes Atta cephalotes v1.1   42 29
No Yes Camponotus floridanus v3.3 Florida carpenter ant 82 31
No Yes Lucilia cuprina Australian sheep blowfly 66 34
No Yes Drosophila grimshawi 1.3   64 35
No Yes Drosophila willistoni 1.3   55 35
No Yes Drosophila pseudoobscura 2.13   66 36
No Yes Drosophila persimilis 1.3   57 36
No Yes Drosophila suzukii   60 33
No Yes Drosophila yakuba 1.3   64 37
No Yes Drosophila simulans 1.3   45 31
No Yes Drosophila sechellia 1.3   60 34
No Yes Drosophila melanogaster 76_5 Fruit fly 288 126
No Yes Drosophila erecta 1.3   61 34
No Yes Drosophila ananassae 1.3   56 34
No Yes Drosophila virilis 1.2   62 35
No Yes Drosophila mojavensis 1.3   60 35
No Yes Megaselia scalaris 22   16 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 79 43
No Yes Culex pipiens quinquefasciatus Southern house mosquito 65 36
No Yes Anopheles darlingi 22 American malaria mosquito 49 27
No Yes Anopheles gambiae 49_3j African malaria mosquito 77 37
No Yes Tribolium castaneum 3.0 Red flour beetle 82 31
No Yes Pediculus humanus corporis (Early assembly) Human body louse 75 33
No Yes Acyrthosiphon pisum Pea aphid 45 19
No Yes Rhodnius prolixus 22   66 30
No Yes Daphnia pulex Common water flea 94 48
No Yes Strigamia maritima 22   81 42
No Yes Sarcoptes scabiei   44 28
No Yes Tetranychus urticae Two-spotted spider mite 52 32
No Yes Ixodes scapularis (Preliminary) Black-legged tick 58 32
No Yes Pristionchus pacificus   66 37
No Yes Meloidogyne incognita Southern root-knot nematode 29 17
No Yes Meloidogyne hapla   14 8
No Yes Onchocerca volvulus 22   48 24
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 72 44
No Yes Caenorhabditis japonica   44 29
No Yes Caenorhabditis brenneri   55 38
No Yes Caenorhabditis remanei   53 33
No Yes Caenorhabditis elegans 76_235 Roundworm 120 56
No Yes Caenorhabditis briggsae 2   41 27
No Yes Trichinella spiralis 22   48 32
No Yes Hymenolepis microstoma   55 28
No Yes Echinococcus multilocularis   37 17
No Yes Echinococcus granulosus   38 18
No Yes Taenia solium Pork tapeworm 34 19
No Yes Schistosoma mansoni   42 24
No Yes Mnemiopsis leidyi Sea walnut 232 121
No Yes Thelohanellus kitauei   3 3
No Yes Acropora digitifera v1.0   336 164
No Yes Nematostella vectensis 1.0 Starlet sea anemone 318 190
No Yes Hydra vulgaris   194 76
No Yes Amphimedon queenslandica   284 130
No Yes Trichoplax adhaerens   239 82
No Yes Proterospongia sp. ATCC 50818   182 81
No Yes Monosiga brevicollis   108 63
No Yes Sphaeroforma arctica JP610   21 18
No Yes Capsaspora owczarzaki ATCC 30864   177 137
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 4
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Rhizomucor miehei CAU432   2 2
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   3 1
No Yes Rhodotorula graminis WP1 v1.0   6 4
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   17 14
No Yes Sphaerobolus stellatus v1.0   3 1
No Yes Piloderma croceum F 1598 v1.0   3 1
No Yes Coniophora puteana   3 1
No Yes Hydnomerulius pinastri v2.0   3 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 2
No Yes Pisolithus microcarpus 441 v1.0   3 1
No Yes Pisolithus tinctorius Marx 270 v1.0   3 1
No Yes Scleroderma citrinum Foug A v1.0   3 1
No Yes Coprinopsis cinerea okayama7 130 v3   9 5
No Yes Pleurotus ostreatus Oyster mushroom 9 5
No Yes Amanita thiersii Skay4041 v1.0   6 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 5 2
No Yes Galerina marginata v1.0   7 2
No Yes Hebeloma cylindrosporum h7 v2.0   7 3
No Yes Laccaria bicolor S238N-H82   7 3
No Yes Agaricus bisporus var. bisporus   6 2
No Yes Schizophyllum commune   3 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   3 1
No Yes Heterobasidion annosum   3 1
No Yes Gloeophyllum trabeumv1.0   4 2
No Yes Punctularia strigosozonata v1.0   10 8
No Yes Sebacina vermifera MAFF 305830 v1.0   4 3
No Yes Fomitiporia mediterranea v1.0   3 1
No Yes Tulasnella calospora AL13/4D v1.0   11 9
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 1
No Yes Fomitopsis pinicolav1.0   3 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   3 1
No Yes Phanerochaete chrysosporium RP-78 2.1   6 2
No Yes Dichomitus squalens   3 1
No Yes Trametes versicolor v1.0   6 3
No Yes Tremella mesenterica Witches' butter 3 1
No Yes Apiospora montagnei NRRL 25634 v1.0   3 3
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Fusarium graminearum   2 1
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   4 3
No Yes Fusarium verticillioides 7600   5 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Aspergillus fumigatus Af293   3 1
No Yes Neosartorya fischeri NRRL 181   3 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Candida albicans SC5314   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Spizellomyces punctatus DAOM BR117   5 5
No Yes Dictyostelium discoideum   20 8
No Yes Dictyostelium purpureum   17 11
No Yes Entamoeba dispar 1.2   353 129
No Yes Entamoeba invadens 1.2   2670 727
No Yes Entamoeba histolytica 1   286 93
No Yes Selaginella moellendorffii   1 1
No Yes Pinus taeda Loblolly pine 1 1
No Yes Eucalyptus grandis v201 Rose gum 13 13
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Glycine max v109 Soybean 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 4 4
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 4 4
No Yes Populus trichocarpa v156 Black cottonwood 9 9
No Yes Vitis vinifera Wine grape 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 5 5
No Yes Aquilegia coerulea v195   10 10
No Yes Triticum urartu 22   20 20
No Yes Triticum aestivum 22 Bread wheat 53 53
No Yes Aegilops tauschii 22   25 25
No Yes Brachypodium distachyon Stiff brome 22 22
No Yes Oryza barthii 22 African wild rice 22 21
No Yes Oryza meridionalis 22   24 24
No Yes Oryza glumaepatula 22   41 41
No Yes Oryza glaberrima African rice 8 8
No Yes Oryza punctata 22   26 26
No Yes Oryza nivara 22   42 35
No Yes Oryza brachyantha 22 Malo sina 14 14
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 23 23
No Yes Oryza sativa v193 Rice 25 25
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 9 9
No Yes Panicum virgatum v202 Switchgrass 37 37
No Yes Setaria italica v164 Foxtail millet 22 22
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 9 9
No Yes Sorghum bicolor Sorghum 14 14
No Yes Musa balbisiana Balbis banana 6 5
No Yes Musa acuminata 22 Wild Malaysian banana 10 10
No Yes Coccomyxa subellipsoidea sp. C-169 v2   5 5
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   115 65
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   8 5
No Yes Volvox carteri v199   9 6
No Yes Chlamydomonas reinhardtii 4.0   22 13
No Yes Ostreococcus sp. RCC809   11 8
No Yes Ostreococcus lucimarinus CCE9901   11 8
No Yes Ostreococcus tauri   8 6
No Yes Bathycoccus prasinos   6 6
No Yes Micromonas sp. RCC299   23 16
No Yes Micromonas pusilla CCMP1545 v3.0   18 9
No Yes Cyanidioschyzon merolae strain 10D 22   5 1
No Yes Cyanidioschyzon merolae   5 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   92 85
No Yes Bigelowiella natans CCMP2755 22   42 16
No Yes Giardia lamblia 2.3   618 228
No Yes Cyanophora paradoxa   180 104
No Yes Leishmania mexicana 2.4   11 7
No Yes Leishmania major strain Friedlin   15 12
No Yes Leishmania infantum JPCM5 2.4   12 9
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   18 13
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   26 7
No Yes Aureococcus anophagefferens   86 52
No Yes Albugo laibachii 22   18 7
No Yes Pythium iwayamai DAOM BR242034 22   25 7
No Yes Pythium arrhenomanes ATCC 12531 22   12 8
No Yes Pythium ultimum v1.7-2   25 12
No Yes Pythium aphanidermatum DAOM BR444 22   10 8
No Yes Pythium irregulare DAOM BR486 22   12 9
No Yes Pythium vexans DAOM BR484 22   25 11
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 12 5
No Yes Phytophthora sojae 1.1   17 6
No Yes Phytophthora infestans T30-4   24 11
No Yes Phytophthora capsici   4 4
No Yes Hyaloperonospora arabidopsidis 22   5 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Thalassiosira pseudonana CCMP1335   2 1
No Yes Perkinsus marinus ATCC 50983   9 6
No Yes Paramecium tetraurelia   1622 428
No Yes Tetrahymena thermophila SB210 1   2980 799
No Yes Ichthyophthirius multifiliis strain G5   398 137
No Yes Cryptosporidium hominis   11 8
No Yes Cryptosporidium muris   17 9
No Yes Cryptosporidium parvum Iowa II   11 8
No Yes Neospora caninum   70 24
No Yes Toxoplasma gondii VEG   51 22
No Yes Toxoplasma gondii ME49   50 22
No Yes Toxoplasma gondii GT1   43 23
No Yes Babesia bovis T2Bo   16 8
No Yes Theileria parva   8 6
No Yes Theileria annulata   7 4
No Yes Plasmodium falciparum 3D7   6 4
No Yes Plasmodium vivax SaI-1 7.0   11 6
No Yes Plasmodium knowlesi strain H   7 4
No Yes Plasmodium yoelii ssp. yoelii 1   6 4
No Yes Plasmodium chabaudi   8 5
No Yes Plasmodium berghei ANKA   8 5
No Yes Symbiodinium minutum clade B1 v1.2   278 181
No Yes Naegleria gruberi   36 29
No Yes Trichomonas vaginalis   58 37
No Yes Guillardia theta CCMP2712 v1.0   409 172
No Yes Emiliania huxleyi CCMP1516   15 12
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Ilumatobacter coccineus   3 1
No Yes Filifactor alocis ATCC 35896   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Haliangium ochraceum DSM 14365   4 4
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   2 2
No Yes Myxococcus fulvus HW-1   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 318 205
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 152 94
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 80 45
No Yes Ascaris suum Victoria/Ghent Pig roundworm 66 36
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 66 43
No Yes Cryptococcus neoformans var. grubii H99   3 1
No Yes Cryptococcus neoformans B-3501A   2 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Candida albicans WO-1   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 19 19
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 26 26
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   70 24
No Yes Plasmodium falciparum HB3   4 3
No Yes Plasmodium falciparum Dd2   4 3
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 767 418
No Yes Homo sapiens (NCBI version) Human 381 199
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 224 124
No Yes Heliconius numata (Incomplete)   12 11
No Yes Loa loa v3.3 (Request) Eye worm 48 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 43 32
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 36 21
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 4 4
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 274 135
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 213 113
No Yes Gorilla gorilla 69_3.1 Western gorilla 216 118
No Yes Pongo abelii 69_2 Sumatran orangutan 208 108
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 209 109
No Yes Macaca mulatta 69_1 Rhesus monkey 223 109
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 215 121
No Yes Otolemur garnettii 69_3 Small-eared galago 232 124
No Yes Microcebus murinus 69_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 69_3.4 Norway rat 212 118
No Yes Mus musculus 69_38 House mouse 225 123
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 221 116
No Yes Cavia porcellus 69_3 Domestic guinea pig 191 100
No Yes Oryctolagus cuniculus 69_2 Rabbit 195 98
No Yes Ochotona princeps 69 American pika 169 92
No Yes Tupaia belangeri 69 Northern tree shrew 116 76
No Yes Sus scrofa 69_10.2 Pig 189 107
No Yes Bos taurus 69_3.1 Cattle 227 115
No Yes Vicugna pacos 69_1 Alpaca 100 55
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 195 105
No Yes Mustela putorius furo 69_1.0 Domestic ferret 245 124
No Yes Ailuropoda melanoleuca 69_1 Giant panda 228 118
No Yes Canis familiaris 69_3.1 Dog 228 118
No Yes Felis catus 69 Domestic cat 140 76
No Yes Equus caballus 69_2 Horse 211 114
No Yes Myotis lucifugus 69_2.0 Little brown bat 180 104
No Yes Pteropus vampyrus 69_1 Large flying fox 205 105
No Yes Sorex araneus 69_1 European shrew 99 59
No Yes Erinaceus europaeus 69 Western European hedgehog 123 72
No Yes Procavia capensis 69_1 Cape rock hyrax 161 93
No Yes Loxodonta africana 69_3 African savanna elephant 215 115
No Yes Echinops telfairi 69 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 110 69
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 69_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 168 103
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 225 120
No Yes Ornithorhynchus anatinus 69_5 Platypus 167 100
No Yes Petromyzon marinus 69_7.0 Sea lamprey 100 57
No Yes Meleagris gallopavo 69_2 Turkey 165 94
No Yes Gallus gallus 69_2 Chicken 183 91
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 185 100
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 174 99
No Yes Anolis carolinensis 69_2.0 Green anole 201 105
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 228 134
No Yes Latimeria chalumnae 69_1 Coelacanth 253 135
No Yes Gadus morhua 69_1 Atlantic cod 236 135
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 260 134
No Yes Takifugu rubripes 69_4 Torafugu 251 136
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 260 142
No Yes Oryzias latipes 69_1 Japanese medaka 252 143
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 283 157
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 273 156
No Yes Danio rerio 69_9 Zebrafish 330 175
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 243 76
No Yes Ciona intestinalis 69 Vase tunicate 180 83
No Yes Drosophila melanogaster 69_5 Fruit fly 65 35
No Yes Caenorhabditis elegans 69_215 Roundworm 44 30
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   6 5
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   3 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes NCBI 2017_08 genome   135415 65222
No Yes Protozoadb 2010_08 (Protozoadb)   2937 1215
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   4 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   13097 6054
No Yes Uniprot 2018_03 genome   103232 50551
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   383 304
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   7 6
No Yes PDB chains (SCOP 1.75) (PDB)   28 21
No Yes Protein Data Bank (all PDB sequenc)   316 238
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   330 330
No Yes TargetDB (Targets)   328 153
No Yes UniProt viral sequences (Viral)   14 13

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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