SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Mus musculus 69_38 > Growth factor receptor domain domains


Growth factor receptor domain superfamily domain assignments
in
Mus musculus 69_38

Assignment details

(show help)


Mus musculus 69_38 has 225 significant domains in 123 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000000412   0.000000000455   136-258   Growth factor receptor domain  
  0.000000033   47-183   Growth factor receptor domain  
ENSMUSP00000001927   1.73e-16   1116-1243   Growth factor receptor domain  
  0.000000000000188   994-1116   Growth factor receptor domain  
  0.00000000000628   923-1030   Growth factor receptor domain  
  0.000000000204   867-950   Growth factor receptor domain  
  0.0000000173   1613-1699   Growth factor receptor domain  
ENSMUSP00000003659   0.00000439   89-227   Growth factor receptor domain  
ENSMUSP00000004850   0.000000000108   129-256   Growth factor receptor domain  
  0.00000000283   220-357   Growth factor receptor domain  
ENSMUSP00000005255   0.0000000000129   51-119   Growth factor receptor domain  
ENSMUSP00000005532   9.42e-18   670-750,786-839   Growth factor receptor domain  
ENSMUSP00000005671   2.51e-16   169-328   Growth factor receptor domain  
ENSMUSP00000006367   1.52e-16   36-122   Growth factor receptor domain  
ENSMUSP00000006614   0.0000977   259-326,362-374   Growth factor receptor domain  
ENSMUSP00000012161   0.000000023   236-374   Growth factor receptor domain  
ENSMUSP00000014917   0.000000000000973   392-517   Growth factor receptor domain  
  0.0424   177-331   Growth factor receptor domain  
ENSMUSP00000015612   0.0000000000392   475-591   Growth factor receptor domain  
  0.0000000000895   340-477   Growth factor receptor domain  
  0.00000000188   924-1046   Growth factor receptor domain  
  0.0000000133   807-930   Growth factor receptor domain  
  0.0000000392   675-810   Growth factor receptor domain  
ENSMUSP00000016172   1.13e-17   1365-1455,1653-1701   Growth factor receptor domain  
ENSMUSP00000017637   3.77e-23   24-105   Growth factor receptor domain  
ENSMUSP00000020171   0.0000000000251   32-106   Growth factor receptor domain  
ENSMUSP00000020702   9.42e-21   37-120   Growth factor receptor domain  
ENSMUSP00000020704   1.49e-18   30-110   Growth factor receptor domain  
ENSMUSP00000020759   5.65e-16   217-333   Growth factor receptor domain  
  0.0000000000008   28-69,157-259   Growth factor receptor domain  
ENSMUSP00000020899   0.0000000000471   261-394   Growth factor receptor domain  
ENSMUSP00000021603   5.34e-19   112-258   Growth factor receptor domain  
ENSMUSP00000022340   6.75e-19   507-547,785-882   Growth factor receptor domain  
ENSMUSP00000022749   0.00000424   83-153,521-556   Growth factor receptor domain  
ENSMUSP00000023520   0.00000298   236-273,388-472   Growth factor receptor domain  
ENSMUSP00000023629   0.0000000000000738   120-248   Growth factor receptor domain  
ENSMUSP00000023807   0.00000000000000785   66-108   Growth factor receptor domain  
ENSMUSP00000024042   0.0000000000000879   194-330   Growth factor receptor domain  
  0.000108   118-249   Growth factor receptor domain  
ENSMUSP00000025497   2.35e-18   2164-2298   Growth factor receptor domain  
  2.04e-17   571-695   Growth factor receptor domain  
  3.45e-17   484-614   Growth factor receptor domain  
  3.61e-17   1883-2009   Growth factor receptor domain  
  6.59e-17   2486-2614   Growth factor receptor domain  
  0.00000000000000146   1353-1488   Growth factor receptor domain  
  0.00000000000000753   1229-1371   Growth factor receptor domain  
  0.0000000000000251   1441-1572   Growth factor receptor domain  
  0.0000000000000424   2257-2373   Growth factor receptor domain  
  0.000000000000659   749-891   Growth factor receptor domain  
  0.0000000000011   1063-1193   Growth factor receptor domain  
  0.00000000000141   2614-2727   Growth factor receptor domain  
  0.00000000000628   251-367   Growth factor receptor domain  
ENSMUSP00000025618   1.57e-28   636-796   Growth factor receptor domain  
  2.92e-27   1485-1604   Growth factor receptor domain  
  1.13e-26   1209-1350   Growth factor receptor domain  
  3.04e-26   887-1044   Growth factor receptor domain  
  1.45e-23   1349-1478   Growth factor receptor domain  
  6.39e-23   1592-1751   Growth factor receptor domain  
  1.91e-21   1037-1164   Growth factor receptor domain  
  1.06e-19   768-894   Growth factor receptor domain  
ENSMUSP00000026234   0.0000000000000235   59-146   Growth factor receptor domain  
ENSMUSP00000027377   8.63e-24   23-104   Growth factor receptor domain  
ENSMUSP00000028288   0.000000000000502   970-1101   Growth factor receptor domain  
  0.000000000000581   1170-1311   Growth factor receptor domain  
  0.00000000000116   439-570   Growth factor receptor domain  
  0.00000000000133   856-987   Growth factor receptor domain  
  0.0000000000157   288-457   Growth factor receptor domain  
  0.0000000000471   629-757   Growth factor receptor domain  
ENSMUSP00000028633   2.82e-18   1848-1975   Growth factor receptor domain  
  7.06e-17   536-659   Growth factor receptor domain  
  7.69e-17   2447-2573   Growth factor receptor domain  
  1.1e-16   1027-1157   Growth factor receptor domain  
  2.15e-16   1318-1452   Growth factor receptor domain  
  3.45e-16   450-578   Growth factor receptor domain  
  3.92e-16   2131-2260   Growth factor receptor domain  
  6.75e-16   718-851   Growth factor receptor domain  
  0.00000000000000133   1197-1335   Growth factor receptor domain  
  0.000000000000361   2573-2689   Growth factor receptor domain  
  0.00000000008   220-337   Growth factor receptor domain  
ENSMUSP00000028689   1.02e-20   354-433,689-737   Growth factor receptor domain  
ENSMUSP00000028735   0.0000000000000119   438-567   Growth factor receptor domain  
  0.0000000000235   324-454   Growth factor receptor domain  
  0.00000000706   654-786   Growth factor receptor domain  
ENSMUSP00000029188   0.000000000000152   28-104   Growth factor receptor domain  
ENSMUSP00000029653   1.73e-16   409-482,739-792   Growth factor receptor domain  
ENSMUSP00000029711   0.00000000000771   191-328   Growth factor receptor domain  
ENSMUSP00000029714   0.0000565   647-735   Growth factor receptor domain  
  0.00133   59-181   Growth factor receptor domain  
  0.022   542-644   Growth factor receptor domain  
ENSMUSP00000029846   0.00000000000392   28-103   Growth factor receptor domain  
ENSMUSP00000030687   8.64e-17   38-142   Growth factor receptor domain  
ENSMUSP00000030897   1.73e-17   335-455   Growth factor receptor domain  
  0.000000000000188   207-328   Growth factor receptor domain  
  0.0267   819-946   Growth factor receptor domain  
  0.0785   1355-1476   Growth factor receptor domain  
ENSMUSP00000032422   0.0000000000000471   194-345   Growth factor receptor domain  
ENSMUSP00000033263   0.00000000000769   32-154   Growth factor receptor domain  
ENSMUSP00000033828   0.000000000000173   110-235   Growth factor receptor domain  
ENSMUSP00000034713   0.000000000738   284-394   Growth factor receptor domain  
ENSMUSP00000035129   0.00000286   252-325,360-380   Growth factor receptor domain  
ENSMUSP00000036974   0.00000000000127   28-111   Growth factor receptor domain  
ENSMUSP00000037536   3.45e-17   589-721   Growth factor receptor domain  
  3.14e-16   712-841   Growth factor receptor domain  
  0.000000000000408   810-966   Growth factor receptor domain  
  0.00000000000133   924-1045   Growth factor receptor domain  
  0.00000000148   1578-1661   Growth factor receptor domain  
ENSMUSP00000038366   5.96e-18   29-161   Growth factor receptor domain  
  9.57e-17   278-399   Growth factor receptor domain  
  0.00000000432   624-735   Growth factor receptor domain  
  0.0429   748-803   Growth factor receptor domain  
ENSMUSP00000040128   0.0000000654   268-338,375-396   Growth factor receptor domain  
  0.000104   570-656   Growth factor receptor domain  
  0.0256   49-116   Growth factor receptor domain  
ENSMUSP00000040187   0.00000000408   24-101   Growth factor receptor domain  
ENSMUSP00000041578   0.0000000000000044   37-158   Growth factor receptor domain  
ENSMUSP00000042927   0.0000000000165   380-510   Growth factor receptor domain  
  0.0000000000282   493-618   Growth factor receptor domain  
ENSMUSP00000043250   8.48e-30   507-663   Growth factor receptor domain  
  2.42e-28   902-1059   Growth factor receptor domain  
  5.01e-26   648-816   Growth factor receptor domain  
  9.42e-19   420-523   Growth factor receptor domain  
  1.44e-16   808-925   Growth factor receptor domain  
  0.00282   1046-1097   Growth factor receptor domain  
ENSMUSP00000044004   4.71e-21   2918-3022,3281-3342   Growth factor receptor domain  
  0.000000000000667   1181-1262,1528-1580   Growth factor receptor domain  
  0.0000000000753   116-189,474-522   Growth factor receptor domain  
ENSMUSP00000044248   0.0000271   275-404   Growth factor receptor domain  
ENSMUSP00000045856   0.0000000000000033   1218-1349   Growth factor receptor domain  
  0.00000000528   986-1129   Growth factor receptor domain  
  0.00000239   280-431   Growth factor receptor domain  
ENSMUSP00000046610   2.67e-21   37-117   Growth factor receptor domain  
ENSMUSP00000049145   0.00000000596   326-436,698-750   Growth factor receptor domain  
ENSMUSP00000050832   0.0000000013   795-904   Growth factor receptor domain  
ENSMUSP00000052644   0.0000000345   117-269   Growth factor receptor domain  
ENSMUSP00000053742   2.41e-34   682-847   Growth factor receptor domain  
  1.86e-17   802-927   Growth factor receptor domain  
ENSMUSP00000053897   4.71e-21   511-643   Growth factor receptor domain  
  1.46e-16   190-344   Growth factor receptor domain  
ENSMUSP00000054275   1.51e-23   2951-3038,3294-3355   Growth factor receptor domain  
  0.000000000000541   1194-1283,1557-1601   Growth factor receptor domain  
  0.0000000000408   134-224,817-866   Growth factor receptor domain  
ENSMUSP00000054389   0.00000000000675   27-108   Growth factor receptor domain  
ENSMUSP00000054583   1.26e-16   311-447   Growth factor receptor domain  
  0.00000000000000863   402-538   Growth factor receptor domain  
  0.00000000000345   185-264,295-358   Growth factor receptor domain  
ENSMUSP00000056958   3.77e-19   125-263   Growth factor receptor domain  
ENSMUSP00000058007   0.0000000000157   312-399,429-442,608-645   Growth factor receptor domain  
  0.0753   807-871   Growth factor receptor domain  
ENSMUSP00000060769   0.00000314   377-480   Growth factor receptor domain  
ENSMUSP00000061836   0.00000000000596   3805-3819,3850-3944   Growth factor receptor domain  
ENSMUSP00000066554   0.0000292   254-316   Growth factor receptor domain  
ENSMUSP00000066857   0.00000000157   984-1111   Growth factor receptor domain  
ENSMUSP00000067325   0.00000000000000639   19-146   Growth factor receptor domain  
ENSMUSP00000070847   0.00000000518   234-352   Growth factor receptor domain  
ENSMUSP00000073099   0.00000209   250-326   Growth factor receptor domain  
ENSMUSP00000074201   0.0000186   404-476   Growth factor receptor domain  
ENSMUSP00000074340   1.88e-16   5090-5235   Growth factor receptor domain  
  0.00000000000957   5413-5526   Growth factor receptor domain  
  0.0000000000157   5235-5353   Growth factor receptor domain  
ENSMUSP00000074751   0.00000000119   382-534   Growth factor receptor domain  
  0.00000173   528-639   Growth factor receptor domain  
ENSMUSP00000075224   0.0000000000000408   449-578   Growth factor receptor domain  
  0.00000000000565   738-864   Growth factor receptor domain  
ENSMUSP00000075434   5.02e-19   312-437   Growth factor receptor domain  
  1.08e-16   32-166   Growth factor receptor domain  
  0.0000000000124   674-829   Growth factor receptor domain  
ENSMUSP00000076003   0.000000000000157   50-117   Growth factor receptor domain  
ENSMUSP00000078741   0.00000000000000267   937-1067   Growth factor receptor domain  
  0.0000000000000455   1136-1269   Growth factor receptor domain  
  0.00000000000204   594-725   Growth factor receptor domain  
  0.0000000267   286-419   Growth factor receptor domain  
ENSMUSP00000079735   0.0000131   260-322   Growth factor receptor domain  
ENSMUSP00000079752   0.00000000000000148   265-280,315-384,649-705   Growth factor receptor domain  
  0.000000000204   1339-1429,1700-1743   Growth factor receptor domain  
  0.022   4328-4413   Growth factor receptor domain  
ENSMUSP00000080214   5.49e-18   791-907   Growth factor receptor domain  
  0.000000000000691   666-786   Growth factor receptor domain  
  0.0000000000816   572-700   Growth factor receptor domain  
ENSMUSP00000080550   0.00000000022   476-584   Growth factor receptor domain  
ENSMUSP00000080716   1.86e-21   499-629   Growth factor receptor domain  
  1.91e-18   179-332   Growth factor receptor domain  
ENSMUSP00000081044   0.0000000000204   37-126   Growth factor receptor domain  
ENSMUSP00000084910   0.00000000008   30-100   Growth factor receptor domain  
ENSMUSP00000085016   0.0000000000000596   799-931   Growth factor receptor domain  
  0.0000000000000636   1110-1251   Growth factor receptor domain  
  0.00000000000272   571-700   Growth factor receptor domain  
  0.00000000000277   268-437   Growth factor receptor domain  
  0.000000129   925-1041   Growth factor receptor domain  
ENSMUSP00000085365   0.0000392   5-71,422-486   Growth factor receptor domain  
ENSMUSP00000088837   0.0000000000000144   180-335   Growth factor receptor domain  
ENSMUSP00000090287   6.6e-17   39-144   Growth factor receptor domain  
ENSMUSP00000090304   0.000000000392   372-393,436-534,719-734   Growth factor receptor domain  
ENSMUSP00000094958   0.000000377   69-183   Growth factor receptor domain  
ENSMUSP00000096394   0.0000000675   4042-4170   Growth factor receptor domain  
ENSMUSP00000096876   6.75e-17   284-414   Growth factor receptor domain  
ENSMUSP00000096877   0.000000000204   242-368   Growth factor receptor domain  
ENSMUSP00000099393   0.00000000000000675   219-339   Growth factor receptor domain  
ENSMUSP00000099575   0.0000000000267   390-519   Growth factor receptor domain  
ENSMUSP00000099948   3.28e-24   505-636   Growth factor receptor domain  
  8.09e-20   186-339   Growth factor receptor domain  
ENSMUSP00000101471   0.0000000292   253-324,362-381   Growth factor receptor domain  
ENSMUSP00000101472   0.0000000236   253-324,362-381   Growth factor receptor domain  
ENSMUSP00000102340   2.35e-18   322-441   Growth factor receptor domain  
  7.85e-17   43-175   Growth factor receptor domain  
  0.00000000549   173-321   Growth factor receptor domain  
  0.0000000449   690-807   Growth factor receptor domain  
ENSMUSP00000102985   0.000000000000011   585-676   Growth factor receptor domain  
ENSMUSP00000103168   0.00000000518   40-163   Growth factor receptor domain  
ENSMUSP00000103951   0.000000000879   339-463   Growth factor receptor domain  
ENSMUSP00000106683   0.00000115   249-323,361-377   Growth factor receptor domain  
ENSMUSP00000108117   0.00000000000000439   34-111   Growth factor receptor domain  
ENSMUSP00000109025   0.0000222   290-361,397-412   Growth factor receptor domain  
ENSMUSP00000109126   9.42e-16   879-1073   Growth factor receptor domain  
  0.0000000000204   673-812   Growth factor receptor domain  
  0.0000267   436-542,593-636   Growth factor receptor domain  
ENSMUSP00000109160   0.000000000000149   4720-4840   Growth factor receptor domain  
  0.000000000113   4889-4996   Growth factor receptor domain  
ENSMUSP00000113752   0.00000000000942   137-251   Growth factor receptor domain  
ENSMUSP00000114123   4.5e-22   502-633   Growth factor receptor domain  
  3.25e-18   186-331   Growth factor receptor domain  
ENSMUSP00000114146   1.02e-17   161-285   Growth factor receptor domain  
  0.0126   537-583   Growth factor receptor domain  
ENSMUSP00000116026   0.000000068   289-430   Growth factor receptor domain  
  0.0000208   600-674   Growth factor receptor domain  
ENSMUSP00000124340   0.000001   354-417,463-478   Growth factor receptor domain  
ENSMUSP00000126559   0.0001   510-569,632-649   Growth factor receptor domain  
ENSMUSP00000127255   0.00000000000000283   912-1040   Growth factor receptor domain  
  0.000000000000119   1126-1251   Growth factor receptor domain  
  0.000000000000565   1213-1333   Growth factor receptor domain  
  0.000000000471   836-962   Growth factor receptor domain  
  0.0000000149   1467-1556,1746-1805   Growth factor receptor domain  
ENSMUSP00000128202   2.04e-17   487-606   Growth factor receptor domain  
  6.12e-17   240-361   Growth factor receptor domain  
  0.000000000000361   364-484   Growth factor receptor domain  
ENSMUSP00000128318   0.0000000000000565   31-124   Growth factor receptor domain  
ENSMUSP00000129762   0.0000581   514-572,635-652   Growth factor receptor domain  
ENSMUSP00000133016   0.0000000000000118   157-270   Growth factor receptor domain  
  0.0000124   55-181   Growth factor receptor domain  
 
Weak hits:
ENSMUSP00000002079   0.000251   464-496,622-661,735-747,775-814   Growth factor receptor domain  
ENSMUSP00000003312   0.00863   28-153   Growth factor receptor domain  
ENSMUSP00000004133   0.000133   432-493   Growth factor receptor domain  
ENSMUSP00000006112   0.000141   258-328,384-389   Growth factor receptor domain  
ENSMUSP00000020547   0.00251   512-577,640-657   Growth factor receptor domain  
ENSMUSP00000023718   0.000455   11-71,420-474   Growth factor receptor domain  
ENSMUSP00000027451   0.000243   259-330,366-389   Growth factor receptor domain  
ENSMUSP00000028781   0.00753   655-798   Growth factor receptor domain  
ENSMUSP00000030036   0.00074   398-464   Growth factor receptor domain  
ENSMUSP00000030420   0.000224   256-324,375-386   Growth factor receptor domain  
ENSMUSP00000030949   0.0173   490-561   Growth factor receptor domain  
ENSMUSP00000032238   0.013   522-582,629-646   Growth factor receptor domain  
ENSMUSP00000039711   0.00107   490-507,611-714   Growth factor receptor domain  
ENSMUSP00000048309   0.00267   1392-1520   Growth factor receptor domain  
  0.00534   2008-2131   Growth factor receptor domain  
  0.0173   788-918   Growth factor receptor domain  
ENSMUSP00000048706   0.00706   511-571,634-648   Growth factor receptor domain  
ENSMUSP00000049708   0.00426   315-410   Growth factor receptor domain  
ENSMUSP00000054210   0.0746   22-63   Growth factor receptor domain  
ENSMUSP00000056525   0.000643   3-71,422-473   Growth factor receptor domain  
ENSMUSP00000072366   0.0113   18-85   Growth factor receptor domain  
ENSMUSP00000073595   0.00011   219-338   Growth factor receptor domain  
ENSMUSP00000073604   0.0392   521-581   Growth factor receptor domain  
ENSMUSP00000078200   0.000746   510-569,632-649   Growth factor receptor domain  
ENSMUSP00000090148   0.0314   510-574,637-651   Growth factor receptor domain  
ENSMUSP00000091474   0.0534   280-373   Growth factor receptor domain  
ENSMUSP00000094994   0.00131   514-574,637-651   Growth factor receptor domain  
ENSMUSP00000098528   0.00314   520-580   Growth factor receptor domain  
ENSMUSP00000110380   0.00251   293-366,402-422   Growth factor receptor domain  
ENSMUSP00000113819   0.0149   515-575   Growth factor receptor domain  
ENSMUSP00000118801   0.000785   121-189   Growth factor receptor domain  
ENSMUSP00000123686   0.000392   1129-1198   Growth factor receptor domain  
ENSMUSP00000124342   0.0392   522-582   Growth factor receptor domain  
ENSMUSP00000125239   0.00204   2009-2136   Growth factor receptor domain  
  0.00235   1371-1498   Growth factor receptor domain  
ENSMUSP00000126386   0.00283   470-529,592-609   Growth factor receptor domain  
ENSMUSP00000126534   0.0314   506-574,637-654   Growth factor receptor domain  
ENSMUSP00000126682   0.00722   516-576   Growth factor receptor domain  
ENSMUSP00000126756   0.000166   510-569,632-649   Growth factor receptor domain  
ENSMUSP00000126885   0.00314   514-574   Growth factor receptor domain  
ENSMUSP00000126966   0.000889   504-576   Growth factor receptor domain  
ENSMUSP00000127465   0.00157   512-571,634-651   Growth factor receptor domain  
ENSMUSP00000127506   0.0121   439-508   Growth factor receptor domain  
ENSMUSP00000127981   0.0154   512-571,634-651   Growth factor receptor domain  
ENSMUSP00000128106   0.00722   513-573,636-650   Growth factor receptor domain  
ENSMUSP00000128350   0.00212   512-570,633-650   Growth factor receptor domain  
ENSMUSP00000128493   0.000161   505-574   Growth factor receptor domain  
ENSMUSP00000128672   0.0157   607-737   Growth factor receptor domain  
ENSMUSP00000128685   0.00173   512-571,634-651   Growth factor receptor domain  
ENSMUSP00000128981   0.0135   520-580   Growth factor receptor domain  
ENSMUSP00000129089   0.00298   512-576,635-653   Growth factor receptor domain  
ENSMUSP00000129145   0.00989   520-580   Growth factor receptor domain  
ENSMUSP00000129296   0.00576   519-579   Growth factor receptor domain  
ENSMUSP00000129347   0.00424   507-570,633-650   Growth factor receptor domain  
ENSMUSP00000129576   0.00029   499-577   Growth factor receptor domain  
ENSMUSP00000129895   0.00502   513-572,635-652   Growth factor receptor domain  
ENSMUSP00000129960   0.0235   535-573   Growth factor receptor domain  
ENSMUSP00000130373   0.00691   503-570,633-650   Growth factor receptor domain  
ENSMUSP00000130557   0.00126   512-576,635-653   Growth factor receptor domain  
ENSMUSP00000131128   0.00424   515-573   Growth factor receptor domain  
ENSMUSP00000131261   0.0157   510-569,632-649   Growth factor receptor domain  
ENSMUSP00000131426   0.00314   518-578,641-656   Growth factor receptor domain  
ENSMUSP00000131564   0.0251   318-377,440-457   Growth factor receptor domain  
ENSMUSP00000131583   0.000349   510-569,632-649   Growth factor receptor domain  
ENSMUSP00000131856   0.000837   505-576   Growth factor receptor domain  
ENSMUSP00000132043   0.0135   520-580   Growth factor receptor domain  
ENSMUSP00000132641   0.00282   513-570,633-650   Growth factor receptor domain  
ENSMUSP00000134233   0.00667   521-581   Growth factor receptor domain  
ENSMUSP00000135186   0.022   511-570,633-650   Growth factor receptor domain  
ENSMUSP00000135228   0.0235   546-607,680-690   Growth factor receptor domain  
ENSMUSP00000135236   0.000416   505-568,631-648   Growth factor receptor domain  
ENSMUSP00000135613   0.00029   511-570,633-650   Growth factor receptor domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Growth factor receptor domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   344964 344964
No Yes Homo sapiens 76_38 Human 736 406
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 116
No Yes Gorilla gorilla 76_3.1 Western gorilla 331 175
No Yes Pongo abelii 76_2 Sumatran orangutan 217 112
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 219 113
No Yes Papio anubis 76 Olive baboon 254 145
No Yes Macaca mulatta 76_1 Rhesus monkey 342 178
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 456 275
No Yes Otolemur garnettii 76_3 Small-eared galago 232 124
No Yes Microcebus murinus 76_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 76_5.0 Norway rat 236 144
No Yes Mus musculus 76_38 House mouse 411 220
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 222 117
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 198 100
No Yes Cavia porcellus 76_3 Domestic guinea pig 196 104
No Yes Oryctolagus cuniculus 76_2 Rabbit 219 109
No Yes Ochotona princeps 76 American pika 169 92
No Yes Tupaia belangeri 76 Northern tree shrew 116 76
No Yes Sus scrofa 76_10.2 Pig 230 126
No Yes Bos taurus 76_3.1 Cattle 240 119
No Yes Ovis aries 76_3.1 Sheep 242 123
No Yes Vicugna pacos 76_1 Alpaca 100 55
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 197 107
No Yes Mustela putorius furo 76_1.0 Domestic ferret 256 126
No Yes Ailuropoda melanoleuca 76_1 Giant panda 260 133
No Yes Canis familiaris 76_3.1 Dog 344 164
No Yes Felis catus 76_6.2 Domestic cat 217 120
No Yes Equus caballus 76_2 Horse 346 154
No Yes Myotis lucifugus 76_2.0 Little brown bat 186 110
No Yes Pteropus vampyrus 76_1 Large flying fox 205 105
No Yes Sorex araneus 76_1 European shrew 99 59
No Yes Erinaceus europaeus 76 Western European hedgehog 123 72
No Yes Procavia capensis 76_1 Cape rock hyrax 162 94
No Yes Loxodonta africana 76_3 African savanna elephant 283 146
No Yes Echinops telfairi 76 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 222 131
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 76_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 208 123
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 237 126
No Yes Ornithorhynchus anatinus 76_5 Platypus 178 109
No Yes Saccoglossus kowalevskii v3.0   846 213
No Yes Petromyzon marinus 76_7.0 Sea lamprey 105 61
No Yes Meleagris gallopavo 76_2 Turkey 187 109
No Yes Gallus gallus 76_4 Chicken 209 112
No Yes Anas platyrhynchos 76_1.0 Mallard 173 87
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 187 102
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 217 115
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 207 119
No Yes Anolis carolinensis 76_2.0 Green anole 231 121
No Yes Xenopus laevis African clawed frog 285 201
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 269 158
No Yes Latimeria chalumnae 76_1 Coelacanth 310 166
No Yes Lepisosteus oculatus 76 Spotted gar 377 184
No Yes Gadus morhua 76_1 Atlantic cod 269 156
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 401 182
No Yes Takifugu rubripes 76_4 Torafugu 1082 620
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 316 186
No Yes Oryzias latipes 76_1 Japanese medaka 328 195
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 285 159
No Yes Poecilia formosa 76 Amazon molly 306 161
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 357 209
No Yes Astyanax mexicanus 76 Mexican tetra 284 174
No Yes Danio rerio 76_9 Zebrafish 479 256
No Yes Oikopleura dioica   254 92
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 820 276
No Yes Ciona intestinalis 76 Vase tunicate 203 93
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 785 270
No Yes Adineta vaga   119 73
No Yes Octopus bimaculoides 280   179 106
No Yes Crassostrea gigas 22 Pacific oyster 461 216
No Yes Lottia gigantea Owl limpet 168 101
No Yes Helobdella robusta   167 88
No Yes Capitella sp. I   333 186
No Yes Danaus plexippus OGS1.0 Monarch butterfly 72 33
No Yes Heliconius melpomene Postman butterfly 64 28
No Yes Bombyx mori Domestic silkworm 60 36
No Yes Nasonia vitripennis Jewel wasp 49 19
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 303 137
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 79 28
No Yes Linepithema humile v1.1 Argentine ant 47 28
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 49 26
No Yes Solenopsis invicta v.2.2.3 Red fire ant 31 25
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 82 31
No Yes Atta cephalotes v1.1   42 29
No Yes Camponotus floridanus v3.3 Florida carpenter ant 82 31
No Yes Lucilia cuprina Australian sheep blowfly 66 34
No Yes Drosophila grimshawi 1.3   64 35
No Yes Drosophila willistoni 1.3   55 35
No Yes Drosophila pseudoobscura 2.13   66 36
No Yes Drosophila persimilis 1.3   57 36
No Yes Drosophila suzukii   60 33
No Yes Drosophila yakuba 1.3   64 37
No Yes Drosophila simulans 1.3   45 31
No Yes Drosophila sechellia 1.3   60 34
No Yes Drosophila melanogaster 76_5 Fruit fly 288 126
No Yes Drosophila erecta 1.3   61 34
No Yes Drosophila ananassae 1.3   56 34
No Yes Drosophila virilis 1.2   62 35
No Yes Drosophila mojavensis 1.3   60 35
No Yes Megaselia scalaris 22   16 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 79 43
No Yes Culex pipiens quinquefasciatus Southern house mosquito 65 36
No Yes Anopheles darlingi 22 American malaria mosquito 49 27
No Yes Anopheles gambiae 49_3j African malaria mosquito 77 37
No Yes Tribolium castaneum 3.0 Red flour beetle 82 31
No Yes Pediculus humanus corporis (Early assembly) Human body louse 75 33
No Yes Acyrthosiphon pisum Pea aphid 45 19
No Yes Rhodnius prolixus 22   66 30
No Yes Daphnia pulex Common water flea 94 48
No Yes Strigamia maritima 22   81 42
No Yes Sarcoptes scabiei   44 28
No Yes Tetranychus urticae Two-spotted spider mite 52 32
No Yes Ixodes scapularis (Preliminary) Black-legged tick 58 32
No Yes Pristionchus pacificus   66 37
No Yes Meloidogyne incognita Southern root-knot nematode 29 17
No Yes Meloidogyne hapla   14 8
No Yes Onchocerca volvulus 22   48 24
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 72 44
No Yes Caenorhabditis japonica   44 29
No Yes Caenorhabditis brenneri   55 38
No Yes Caenorhabditis remanei   53 33
No Yes Caenorhabditis elegans 76_235 Roundworm 120 56
No Yes Caenorhabditis briggsae 2   41 27
No Yes Trichinella spiralis 22   48 32
No Yes Hymenolepis microstoma   55 28
No Yes Echinococcus multilocularis   37 17
No Yes Echinococcus granulosus   38 18
No Yes Taenia solium Pork tapeworm 34 19
No Yes Schistosoma mansoni   42 24
No Yes Mnemiopsis leidyi Sea walnut 232 121
No Yes Thelohanellus kitauei   3 3
No Yes Acropora digitifera v1.0   336 164
No Yes Nematostella vectensis 1.0 Starlet sea anemone 318 190
No Yes Hydra vulgaris   194 76
No Yes Amphimedon queenslandica   284 130
No Yes Trichoplax adhaerens   239 82
No Yes Proterospongia sp. ATCC 50818   182 81
No Yes Monosiga brevicollis   108 63
No Yes Sphaeroforma arctica JP610   21 18
No Yes Capsaspora owczarzaki ATCC 30864   177 137
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 4
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Rhizomucor miehei CAU432   2 2
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   3 1
No Yes Rhodotorula graminis WP1 v1.0   6 4
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   17 14
No Yes Sphaerobolus stellatus v1.0   3 1
No Yes Piloderma croceum F 1598 v1.0   3 1
No Yes Coniophora puteana   3 1
No Yes Hydnomerulius pinastri v2.0   3 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 2
No Yes Pisolithus microcarpus 441 v1.0   3 1
No Yes Pisolithus tinctorius Marx 270 v1.0   3 1
No Yes Scleroderma citrinum Foug A v1.0   3 1
No Yes Coprinopsis cinerea okayama7 130 v3   9 5
No Yes Pleurotus ostreatus Oyster mushroom 9 5
No Yes Amanita thiersii Skay4041 v1.0   6 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 5 2
No Yes Galerina marginata v1.0   7 2
No Yes Hebeloma cylindrosporum h7 v2.0   7 3
No Yes Laccaria bicolor S238N-H82   7 3
No Yes Agaricus bisporus var. bisporus   6 2
No Yes Schizophyllum commune   3 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   3 1
No Yes Heterobasidion annosum   3 1
No Yes Gloeophyllum trabeumv1.0   4 2
No Yes Punctularia strigosozonata v1.0   10 8
No Yes Sebacina vermifera MAFF 305830 v1.0   4 3
No Yes Fomitiporia mediterranea v1.0   3 1
No Yes Tulasnella calospora AL13/4D v1.0   11 9
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 1
No Yes Fomitopsis pinicolav1.0   3 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   3 1
No Yes Phanerochaete chrysosporium RP-78 2.1   6 2
No Yes Dichomitus squalens   3 1
No Yes Trametes versicolor v1.0   6 3
No Yes Tremella mesenterica Witches' butter 3 1
No Yes Apiospora montagnei NRRL 25634 v1.0   3 3
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Fusarium graminearum   2 1
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   4 3
No Yes Fusarium verticillioides 7600   5 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Aspergillus fumigatus Af293   3 1
No Yes Neosartorya fischeri NRRL 181   3 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Candida albicans SC5314   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Spizellomyces punctatus DAOM BR117   5 5
No Yes Dictyostelium discoideum   20 8
No Yes Dictyostelium purpureum   17 11
No Yes Entamoeba dispar 1.2   353 129
No Yes Entamoeba invadens 1.2   2670 727
No Yes Entamoeba histolytica 1   286 93
No Yes Selaginella moellendorffii   1 1
No Yes Pinus taeda Loblolly pine 1 1
No Yes Eucalyptus grandis v201 Rose gum 13 13
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Glycine max v109 Soybean 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 4 4
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 4 4
No Yes Populus trichocarpa v156 Black cottonwood 9 9
No Yes Vitis vinifera Wine grape 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 5 5
No Yes Aquilegia coerulea v195   10 10
No Yes Triticum urartu 22   20 20
No Yes Triticum aestivum 22 Bread wheat 53 53
No Yes Aegilops tauschii 22   25 25
No Yes Brachypodium distachyon Stiff brome 22 22
No Yes Oryza barthii 22 African wild rice 22 21
No Yes Oryza meridionalis 22   24 24
No Yes Oryza glumaepatula 22   41 41
No Yes Oryza glaberrima African rice 8 8
No Yes Oryza punctata 22   26 26
No Yes Oryza nivara 22   42 35
No Yes Oryza brachyantha 22 Malo sina 14 14
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 23 23
No Yes Oryza sativa v193 Rice 25 25
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 9 9
No Yes Panicum virgatum v202 Switchgrass 37 37
No Yes Setaria italica v164 Foxtail millet 22 22
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 9 9
No Yes Sorghum bicolor Sorghum 14 14
No Yes Musa balbisiana Balbis banana 6 5
No Yes Musa acuminata 22 Wild Malaysian banana 10 10
No Yes Coccomyxa subellipsoidea sp. C-169 v2   5 5
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   115 65
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   8 5
No Yes Volvox carteri v199   9 6
No Yes Chlamydomonas reinhardtii 4.0   22 13
No Yes Ostreococcus sp. RCC809   11 8
No Yes Ostreococcus lucimarinus CCE9901   11 8
No Yes Ostreococcus tauri   8 6
No Yes Bathycoccus prasinos   6 6
No Yes Micromonas sp. RCC299   23 16
No Yes Micromonas pusilla CCMP1545 v3.0   18 9
No Yes Cyanidioschyzon merolae strain 10D 22   5 1
No Yes Cyanidioschyzon merolae   5 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   92 85
No Yes Bigelowiella natans CCMP2755 22   42 16
No Yes Giardia lamblia 2.3   618 228
No Yes Cyanophora paradoxa   180 104
No Yes Leishmania mexicana 2.4   11 7
No Yes Leishmania major strain Friedlin   15 12
No Yes Leishmania infantum JPCM5 2.4   12 9
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   18 13
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   26 7
No Yes Aureococcus anophagefferens   86 52
No Yes Albugo laibachii 22   18 7
No Yes Pythium iwayamai DAOM BR242034 22   25 7
No Yes Pythium arrhenomanes ATCC 12531 22   12 8
No Yes Pythium ultimum v1.7-2   25 12
No Yes Pythium aphanidermatum DAOM BR444 22   10 8
No Yes Pythium irregulare DAOM BR486 22   12 9
No Yes Pythium vexans DAOM BR484 22   25 11
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 12 5
No Yes Phytophthora sojae 1.1   17 6
No Yes Phytophthora infestans T30-4   24 11
No Yes Phytophthora capsici   4 4
No Yes Hyaloperonospora arabidopsidis 22   5 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Thalassiosira pseudonana CCMP1335   2 1
No Yes Perkinsus marinus ATCC 50983   9 6
No Yes Paramecium tetraurelia   1622 428
No Yes Tetrahymena thermophila SB210 1   2980 799
No Yes Ichthyophthirius multifiliis strain G5   398 137
No Yes Cryptosporidium hominis   11 8
No Yes Cryptosporidium muris   17 9
No Yes Cryptosporidium parvum Iowa II   11 8
No Yes Neospora caninum   70 24
No Yes Toxoplasma gondii VEG   51 22
No Yes Toxoplasma gondii ME49   50 22
No Yes Toxoplasma gondii GT1   43 23
No Yes Babesia bovis T2Bo   16 8
No Yes Theileria parva   8 6
No Yes Theileria annulata   7 4
No Yes Plasmodium falciparum 3D7   6 4
No Yes Plasmodium vivax SaI-1 7.0   11 6
No Yes Plasmodium knowlesi strain H   7 4
No Yes Plasmodium yoelii ssp. yoelii 1   6 4
No Yes Plasmodium chabaudi   8 5
No Yes Plasmodium berghei ANKA   8 5
No Yes Symbiodinium minutum clade B1 v1.2   278 181
No Yes Naegleria gruberi   36 29
No Yes Trichomonas vaginalis   58 37
No Yes Guillardia theta CCMP2712 v1.0   409 172
No Yes Emiliania huxleyi CCMP1516   15 12
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Ilumatobacter coccineus   3 1
No Yes Filifactor alocis ATCC 35896   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Haliangium ochraceum DSM 14365   4 4
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   2 2
No Yes Myxococcus fulvus HW-1   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 318 205
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 152 94
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 80 45
No Yes Ascaris suum Victoria/Ghent Pig roundworm 66 36
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 66 43
No Yes Cryptococcus neoformans var. grubii H99   3 1
No Yes Cryptococcus neoformans B-3501A   2 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Candida albicans WO-1   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 19 19
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 26 26
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   70 24
No Yes Plasmodium falciparum HB3   4 3
No Yes Plasmodium falciparum Dd2   4 3
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 767 418
No Yes Homo sapiens (NCBI version) Human 381 199
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 224 124
No Yes Heliconius numata (Incomplete)   12 11
No Yes Loa loa v3.3 (Request) Eye worm 48 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 43 32
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 36 21
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 4 4
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 274 135
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 213 113
No Yes Gorilla gorilla 69_3.1 Western gorilla 216 118
No Yes Pongo abelii 69_2 Sumatran orangutan 208 108
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 209 109
No Yes Macaca mulatta 69_1 Rhesus monkey 223 109
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 215 121
No Yes Otolemur garnettii 69_3 Small-eared galago 232 124
No Yes Microcebus murinus 69_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 69_3.4 Norway rat 212 118
No Yes Mus musculus 69_38 House mouse 225 123
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 221 116
No Yes Cavia porcellus 69_3 Domestic guinea pig 191 100
No Yes Oryctolagus cuniculus 69_2 Rabbit 195 98
No Yes Ochotona princeps 69 American pika 169 92
No Yes Tupaia belangeri 69 Northern tree shrew 116 76
No Yes Sus scrofa 69_10.2 Pig 189 107
No Yes Bos taurus 69_3.1 Cattle 227 115
No Yes Vicugna pacos 69_1 Alpaca 100 55
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 195 105
No Yes Mustela putorius furo 69_1.0 Domestic ferret 245 124
No Yes Ailuropoda melanoleuca 69_1 Giant panda 228 118
No Yes Canis familiaris 69_3.1 Dog 228 118
No Yes Felis catus 69 Domestic cat 140 76
No Yes Equus caballus 69_2 Horse 211 114
No Yes Myotis lucifugus 69_2.0 Little brown bat 180 104
No Yes Pteropus vampyrus 69_1 Large flying fox 205 105
No Yes Sorex araneus 69_1 European shrew 99 59
No Yes Erinaceus europaeus 69 Western European hedgehog 123 72
No Yes Procavia capensis 69_1 Cape rock hyrax 161 93
No Yes Loxodonta africana 69_3 African savanna elephant 215 115
No Yes Echinops telfairi 69 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 110 69
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 69_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 168 103
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 225 120
No Yes Ornithorhynchus anatinus 69_5 Platypus 167 100
No Yes Petromyzon marinus 69_7.0 Sea lamprey 100 57
No Yes Meleagris gallopavo 69_2 Turkey 165 94
No Yes Gallus gallus 69_2 Chicken 183 91
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 185 100
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 174 99
No Yes Anolis carolinensis 69_2.0 Green anole 201 105
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 228 134
No Yes Latimeria chalumnae 69_1 Coelacanth 253 135
No Yes Gadus morhua 69_1 Atlantic cod 236 135
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 260 134
No Yes Takifugu rubripes 69_4 Torafugu 251 136
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 260 142
No Yes Oryzias latipes 69_1 Japanese medaka 252 143
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 283 157
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 273 156
No Yes Danio rerio 69_9 Zebrafish 330 175
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 243 76
No Yes Ciona intestinalis 69 Vase tunicate 180 83
No Yes Drosophila melanogaster 69_5 Fruit fly 65 35
No Yes Caenorhabditis elegans 69_215 Roundworm 44 30
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   6 5
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   3 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes NCBI 2017_08 genome   135415 65222
No Yes Protozoadb 2010_08 (Protozoadb)   2937 1215
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   4 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   13097 6054
No Yes Uniprot 2018_03 genome   103232 50551
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   383 304
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   7 6
No Yes PDB chains (SCOP 1.75) (PDB)   28 21
No Yes Protein Data Bank (all PDB sequenc)   316 238
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   330 330
No Yes TargetDB (Targets)   328 153
No Yes UniProt viral sequences (Viral)   14 13

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.