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  Home > Genomes > Otolemur garnettii 69_3 > Growth factor receptor domain domains


Growth factor receptor domain superfamily domain assignments
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Otolemur garnettii 69_3

Assignment details

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Otolemur garnettii 69_3 has 232 significant domains in 124 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000000049   3.77e-16   216-340   Growth factor receptor domain  
  0.0000000000000424   150-261   Growth factor receptor domain  
ENSOGAP00000000142   6.8e-19   32-113   Growth factor receptor domain  
ENSOGAP00000000247   0.00000000000157   364-495   Growth factor receptor domain  
ENSOGAP00000000462   1.22e-17   193-315   Growth factor receptor domain  
  3.06e-17   439-558   Growth factor receptor domain  
  9.42e-16   354-478   Growth factor receptor domain  
ENSOGAP00000000657   0.0000000000282   299-424   Growth factor receptor domain  
  0.000000000267   792-902   Growth factor receptor domain  
  0.00000000204   543-662   Growth factor receptor domain  
ENSOGAP00000001086   0.0000000000612   389-518   Growth factor receptor domain  
ENSOGAP00000001341   4.32e-23   499-629   Growth factor receptor domain  
  9.31e-19   179-332   Growth factor receptor domain  
ENSOGAP00000001465   9.42e-24   24-104   Growth factor receptor domain  
ENSOGAP00000001577   0.0000000000000251   94-222   Growth factor receptor domain  
ENSOGAP00000001613   2.35e-18   312-437   Growth factor receptor domain  
  6.91e-17   32-166   Growth factor receptor domain  
  0.00000000373   691-830   Growth factor receptor domain  
ENSOGAP00000001736   0.0000105   260-322   Growth factor receptor domain  
ENSOGAP00000001996   0.00000105   249-378   Growth factor receptor domain  
ENSOGAP00000002332   0.00000000000439   3805-3817,3848-3942   Growth factor receptor domain  
ENSOGAP00000002421   2.83e-16   991-1129   Growth factor receptor domain  
  0.00000000000000377   1127-1257   Growth factor receptor domain  
  0.00000000000000416   847-968   Growth factor receptor domain  
  0.000000000022   1221-1339   Growth factor receptor domain  
  0.00000000753   1729-1812   Growth factor receptor domain  
ENSOGAP00000002459   9.89e-16   794-918   Growth factor receptor domain  
  0.0000000000000133   547-673   Growth factor receptor domain  
  0.0000000000000143   658-798   Growth factor receptor domain  
  0.0000000377   1256-1342   Growth factor receptor domain  
ENSOGAP00000002566   0.00000000137   138-264   Growth factor receptor domain  
ENSOGAP00000002624   1.13e-16   280-400   Growth factor receptor domain  
  4.55e-16   29-163   Growth factor receptor domain  
  0.00000000000393   626-786   Growth factor receptor domain  
ENSOGAP00000002659   0.000000000000141   163-318   Growth factor receptor domain  
ENSOGAP00000002680   0.0000000000235   268-390   Growth factor receptor domain  
ENSOGAP00000002821   1.57e-17   546-674   Growth factor receptor domain  
  1.37e-16   668-797   Growth factor receptor domain  
  0.0000000000029   878-1001   Growth factor receptor domain  
  0.00000000000361   800-922   Growth factor receptor domain  
  0.0000000000989   1531-1615   Growth factor receptor domain  
  0.000000000942   989-1089   Growth factor receptor domain  
ENSOGAP00000003000   8.63e-18   35-132   Growth factor receptor domain  
ENSOGAP00000003040   0.00000000408   40-159   Growth factor receptor domain  
ENSOGAP00000003094   0.0000000000011   191-329   Growth factor receptor domain  
ENSOGAP00000003411   8.74e-35   584-748   Growth factor receptor domain  
  0.000000000000611   717-839   Growth factor receptor domain  
ENSOGAP00000003760   0.0000314   204-266   Growth factor receptor domain  
ENSOGAP00000004204   0.0000000000785   275-356   Growth factor receptor domain  
  0.000000000243   790-912   Growth factor receptor domain  
ENSOGAP00000004291   0.0000176   226-294,345-358   Growth factor receptor domain  
ENSOGAP00000004381   0.000000000361   551-589,704-750   Growth factor receptor domain  
ENSOGAP00000004522   6.75e-16   330-451   Growth factor receptor domain  
  0.0000000000000643   201-323   Growth factor receptor domain  
  0.00152   419-448,512-592   Growth factor receptor domain  
  0.0596   808-948   Growth factor receptor domain  
ENSOGAP00000004544   0.00000251   257-321   Growth factor receptor domain  
ENSOGAP00000004685   0.0000000000000526   25-108   Growth factor receptor domain  
ENSOGAP00000004875   1.46e-21   37-121   Growth factor receptor domain  
ENSOGAP00000004927   0.000000000115   162-284   Growth factor receptor domain  
ENSOGAP00000005110   0.0000000000000414   584-676   Growth factor receptor domain  
ENSOGAP00000005252   1.73e-24   518-609,865-926   Growth factor receptor domain  
  0.0000000000000691   1397-1517,1763-1819   Growth factor receptor domain  
ENSOGAP00000005477   0.00000659   3-120   Growth factor receptor domain  
ENSOGAP00000005700   0.00000000173   813-925   Growth factor receptor domain  
ENSOGAP00000005775   0.000000667   230-370   Growth factor receptor domain  
  0.00000113   540-614   Growth factor receptor domain  
ENSOGAP00000005954   0.000000235   260-400   Growth factor receptor domain  
ENSOGAP00000005979   0.000000000000014   798-928   Growth factor receptor domain  
  0.00000000000518   1109-1250   Growth factor receptor domain  
  0.0000000000107   510-624   Growth factor receptor domain  
  0.000000000408   607-731   Growth factor receptor domain  
  0.00000000102   184-318   Growth factor receptor domain  
  0.00000000785   67-201   Growth factor receptor domain  
ENSOGAP00000006497   8e-18   886-1030   Growth factor receptor domain  
  0.0000000000188   680-806   Growth factor receptor domain  
  0.0000000000989   994-1117   Growth factor receptor domain  
  0.000000000675   793-913   Growth factor receptor domain  
  0.000000816   443-549,600-644   Growth factor receptor domain  
ENSOGAP00000006525   0.0000000000000345   219-345   Growth factor receptor domain  
ENSOGAP00000006847   0.000000000000549   27-108   Growth factor receptor domain  
ENSOGAP00000007084   0.000000000204   1672-1711,1991-2028,2304-2354   Growth factor receptor domain  
ENSOGAP00000007252   0.0000000235   1363-1453,1651-1699   Growth factor receptor domain  
ENSOGAP00000007599   0.0000471   3-76,427-481   Growth factor receptor domain  
ENSOGAP00000007698   9.26e-18   134-252   Growth factor receptor domain  
  0.000000000549   9-64,106-162   Growth factor receptor domain  
ENSOGAP00000007715   5.34e-18   461-582   Growth factor receptor domain  
  7.38e-18   2055-2189   Growth factor receptor domain  
  2.04e-17   639-781   Growth factor receptor domain  
  2.35e-17   1774-1900   Growth factor receptor domain  
  1.73e-16   2380-2508   Growth factor receptor domain  
  0.00000000000000118   999-1126   Growth factor receptor domain  
  0.00000000000000118   1244-1379   Growth factor receptor domain  
  0.0000000000000143   1122-1262   Growth factor receptor domain  
  0.0000000000033   2505-2621   Growth factor receptor domain  
  0.000000000314   377-469   Growth factor receptor domain  
ENSOGAP00000007752   6.75e-16   38-143   Growth factor receptor domain  
ENSOGAP00000007794   0.00000000000000361   51-128   Growth factor receptor domain  
ENSOGAP00000008154   1.57e-22   476-607   Growth factor receptor domain  
  1.03e-18   157-310   Growth factor receptor domain  
ENSOGAP00000008282   0.0000000487   4042-4170   Growth factor receptor domain  
ENSOGAP00000008382   0.0000000191   234-323,361-380   Growth factor receptor domain  
ENSOGAP00000008576   5.96e-19   1849-1982   Growth factor receptor domain  
  5.26e-17   1026-1155   Growth factor receptor domain  
  1.05e-16   2449-2576   Growth factor receptor domain  
  1.18e-16   534-657   Growth factor receptor domain  
  1.24e-16   448-576   Growth factor receptor domain  
  1.49e-16   1317-1453   Growth factor receptor domain  
  3.3e-16   2133-2262   Growth factor receptor domain  
  8.16e-16   723-849   Growth factor receptor domain  
  0.00000000000000119   1196-1322   Growth factor receptor domain  
  0.000000000000126   2575-2691   Growth factor receptor domain  
ENSOGAP00000008970   0.0000000000000116   40-126   Growth factor receptor domain  
ENSOGAP00000009011   0.000000000518   30-154   Growth factor receptor domain  
ENSOGAP00000009118   0.00000000000581   918-1051   Growth factor receptor domain  
  0.0000000000154   478-594   Growth factor receptor domain  
  0.00000000267   352-480   Growth factor receptor domain  
  0.00000000691   104-238   Growth factor receptor domain  
  0.00000022   809-934   Growth factor receptor domain  
ENSOGAP00000009637   5.97e-22   363-494   Growth factor receptor domain  
  0.0000000000366   45-196   Growth factor receptor domain  
ENSOGAP00000009662   2.04e-20   511-642   Growth factor receptor domain  
  1.93e-16   189-343   Growth factor receptor domain  
ENSOGAP00000009699   0.0000000000173   10-132   Growth factor receptor domain  
ENSOGAP00000009811   0.00000000000119   28-103   Growth factor receptor domain  
ENSOGAP00000010051   0.0000000000000377   438-567   Growth factor receptor domain  
  0.00000000033   731-857   Growth factor receptor domain  
ENSOGAP00000010138   0.00000000000439   172-303   Growth factor receptor domain  
  0.000000022   376-479   Growth factor receptor domain  
ENSOGAP00000010320   0.00000000000001   194-345   Growth factor receptor domain  
ENSOGAP00000010579   0.0000000000173   1302-1422   Growth factor receptor domain  
  0.0000000000757   987-1131   Growth factor receptor domain  
  0.0000432   280-434   Growth factor receptor domain  
ENSOGAP00000010720   0.000000000000033   347-426,682-730   Growth factor receptor domain  
ENSOGAP00000010780   1.88e-21   2917-3021,3280-3341   Growth factor receptor domain  
  0.0000000000004   1180-1261,1527-1579   Growth factor receptor domain  
  0.000000235   3813-3899,4183-4224   Growth factor receptor domain  
ENSOGAP00000010911   0.0000000000000033   1-119   Growth factor receptor domain  
ENSOGAP00000011245   0.0000000000345   25-96   Growth factor receptor domain  
ENSOGAP00000011260   0.0000216   404-476   Growth factor receptor domain  
ENSOGAP00000011490   4.87e-16   331-453   Growth factor receptor domain  
  0.000000000000022   407-543   Growth factor receptor domain  
  0.000000000000989   187-266,300-368   Growth factor receptor domain  
ENSOGAP00000011557   3.3e-19   2133-2267   Growth factor receptor domain  
  1.57e-17   1028-1163   Growth factor receptor domain  
  3.14e-17   540-665   Growth factor receptor domain  
  1.38e-16   1853-1979   Growth factor receptor domain  
  2.51e-16   1118-1256   Growth factor receptor domain  
  0.0000000000000251   719-857   Growth factor receptor domain  
  0.000000000000392   2230-2349   Growth factor receptor domain  
  0.00000000000121   1246-1381   Growth factor receptor domain  
  0.00000000000122   2497-2617   Growth factor receptor domain  
  0.0000000000204   1366-1499   Growth factor receptor domain  
  0.000000000377   1499-1661   Growth factor receptor domain  
  0.0000000691   1752-1853   Growth factor receptor domain  
  0.000000235   2620-2700   Growth factor receptor domain  
ENSOGAP00000011750   1.95e-30   708-872   Growth factor receptor domain  
  4.4e-30   1343-1499   Growth factor receptor domain  
  1.24e-29   956-1110   Growth factor receptor domain  
  4.03e-28   1198-1350   Growth factor receptor domain  
  1.39e-27   510-657   Growth factor receptor domain  
  4.57e-21   1441-1601   Growth factor receptor domain  
  3.92e-17   1106-1210   Growth factor receptor domain  
  0.0000000000000667   862-975   Growth factor receptor domain  
ENSOGAP00000011839   0.00000132   230-303,338-357   Growth factor receptor domain  
ENSOGAP00000011861   2.2e-18   479-518,756-853   Growth factor receptor domain  
ENSOGAP00000011883   0.00000000000000726   182-334   Growth factor receptor domain  
ENSOGAP00000011916   0.0000000426   253-318,364-380   Growth factor receptor domain  
ENSOGAP00000011932   0.000000000738   353-436,698-751   Growth factor receptor domain  
ENSOGAP00000011990   0.0000000000659   481-582   Growth factor receptor domain  
ENSOGAP00000012101   0.00000141   225-363   Growth factor receptor domain  
  0.0000366   534-608   Growth factor receptor domain  
ENSOGAP00000012128   0.000000008   1273-1363,1560-1609   Growth factor receptor domain  
ENSOGAP00000012182   0.00000244   236-333,369-375   Growth factor receptor domain  
ENSOGAP00000012556   2.04e-18   280-399   Growth factor receptor domain  
  4.39e-17   4-128   Growth factor receptor domain  
  0.0000000262   352-399,607-718   Growth factor receptor domain  
  0.000000115   132-210,242-277   Growth factor receptor domain  
  0.0293   736-792   Growth factor receptor domain  
ENSOGAP00000012576   0.00000000000549   701-778,957-1004   Growth factor receptor domain  
ENSOGAP00000012655   0.000000000000345   125-257   Growth factor receptor domain  
ENSOGAP00000012664   0.0000000000000549   5212-5340   Growth factor receptor domain  
  0.0000000000148   5397-5513   Growth factor receptor domain  
ENSOGAP00000013038   1.57e-16   41-166   Growth factor receptor domain  
ENSOGAP00000013158   0.0000000196   264-335,373-392   Growth factor receptor domain  
ENSOGAP00000013204   1.08e-17   387-428,673-754   Growth factor receptor domain  
  9.42e-17   763-843,879-892,1202-1246   Growth factor receptor domain  
ENSOGAP00000013417   0.0000251   143-179,289-370   Growth factor receptor domain  
ENSOGAP00000013501   0.0000000000000259   1097-1229   Growth factor receptor domain  
  0.000000000000541   555-685   Growth factor receptor domain  
  0.000000000000957   373-497   Growth factor receptor domain  
  0.00000000000392   743-876   Growth factor receptor domain  
  0.0000000188   252-380   Growth factor receptor domain  
ENSOGAP00000013735   0.00000000392   37-117   Growth factor receptor domain  
ENSOGAP00000014046   0.00000000000022   49-116   Growth factor receptor domain  
ENSOGAP00000014102   0.0000000000000345   427-557   Growth factor receptor domain  
  0.0000000000282   716-842   Growth factor receptor domain  
ENSOGAP00000014252   0.00000000000068   591-720   Growth factor receptor domain  
  0.00000000000146   970-1101   Growth factor receptor domain  
  0.00000000000691   1170-1311   Growth factor receptor domain  
  0.00000000000957   408-532   Growth factor receptor domain  
  0.0000000000345   856-987   Growth factor receptor domain  
ENSOGAP00000014333   9.26e-16   31-124   Growth factor receptor domain  
ENSOGAP00000014351   0.000000298   49-107,168-181,469-507   Growth factor receptor domain  
ENSOGAP00000014371   0.00000000000000408   296-408,682-727   Growth factor receptor domain  
ENSOGAP00000014410   4e-19   125-263   Growth factor receptor domain  
ENSOGAP00000014513   0.0000000000173   51-119   Growth factor receptor domain  
ENSOGAP00000014775   1.02e-16   109-244   Growth factor receptor domain  
ENSOGAP00000015175   0.000000000942   417-529   Growth factor receptor domain  
ENSOGAP00000015322   0.00000000267   255-381   Growth factor receptor domain  
ENSOGAP00000015828   4.79e-24   23-105   Growth factor receptor domain  
ENSOGAP00000015850   0.00000000000119   38-121   Growth factor receptor domain  
ENSOGAP00000016073   0.0000000000785   26-96   Growth factor receptor domain  
ENSOGAP00000016279   1.73e-16   673-794   Growth factor receptor domain  
  0.0000000000157   458-586   Growth factor receptor domain  
  0.0000000033   881-961,1075-1136   Growth factor receptor domain  
ENSOGAP00000016300   0.0000000000000361   61-148   Growth factor receptor domain  
ENSOGAP00000016947   0.00000000643   234-352   Growth factor receptor domain  
ENSOGAP00000017733   4.24e-17   343-478   Growth factor receptor domain  
  0.000000000000816   579-686   Growth factor receptor domain  
ENSOGAP00000017746   0.0000706   268-339,380-400   Growth factor receptor domain  
ENSOGAP00000018060   0.00000000111   590-679   Growth factor receptor domain  
ENSOGAP00000018555   0.0000000000785   246-367   Growth factor receptor domain  
ENSOGAP00000019337   0.0000000000000136   39-157   Growth factor receptor domain  
ENSOGAP00000019774   0.00000000000001   147-280   Growth factor receptor domain  
ENSOGAP00000019965   0.00000753   4018-4162   Growth factor receptor domain  
ENSOGAP00000020058   0.00000235   73-187,282-289   Growth factor receptor domain  
ENSOGAP00000020657   0.000000000022   32-107   Growth factor receptor domain  
ENSOGAP00000020796   6.75e-16   10-130   Growth factor receptor domain  
ENSOGAP00000021204   0.0000424   47-81   Growth factor receptor domain  
ENSOGAP00000021258   0.0000000146   240-377   Growth factor receptor domain  
ENSOGAP00000021632   0.0000000188   25-141   Growth factor receptor domain  
ENSOGAP00000021703   0.000000000455   24-101   Growth factor receptor domain  
ENSOGAP00000021712   0.0000000000000565   391-517   Growth factor receptor domain  
  0.0000000000235   274-408   Growth factor receptor domain  
 
Weak hits:
ENSOGAP00000001363   0.0518   348-475   Growth factor receptor domain  
  0.0581   61-168   Growth factor receptor domain  
  0.0722   646-728   Growth factor receptor domain  
  0.0926   544-641   Growth factor receptor domain  
ENSOGAP00000001717   0.0534   338-387,829-876   Growth factor receptor domain  
ENSOGAP00000002545   0.0385   18-69   Growth factor receptor domain  
ENSOGAP00000002670   0.00051   6-94   Growth factor receptor domain  
ENSOGAP00000002805   0.00282   481-506,610-659,785-822   Growth factor receptor domain  
ENSOGAP00000002850   0.0361   558-599   Growth factor receptor domain  
ENSOGAP00000003165   0.000251   432-493   Growth factor receptor domain  
ENSOGAP00000003637   0.000455   2011-2138   Growth factor receptor domain  
  0.00188   1373-1500   Growth factor receptor domain  
ENSOGAP00000003940   0.000267   1391-1517   Growth factor receptor domain  
  0.00282   2005-2127   Growth factor receptor domain  
ENSOGAP00000004227   0.00807   314-409   Growth factor receptor domain  
ENSOGAP00000004878   0.0612   177-241   Growth factor receptor domain  
ENSOGAP00000005768   0.0424   197-337   Growth factor receptor domain  
ENSOGAP00000006082   0.000583   398-464   Growth factor receptor domain  
ENSOGAP00000007770   0.000269   231-296   Growth factor receptor domain  
ENSOGAP00000007822   0.000251   228-289   Growth factor receptor domain  
ENSOGAP00000011089   0.000157   24-117,421-470,604-626   Growth factor receptor domain  
ENSOGAP00000012132   0.000769   298-362,408-427   Growth factor receptor domain  
ENSOGAP00000014994   0.000235   219-335   Growth factor receptor domain  
ENSOGAP00000016639   0.00942   280-373   Growth factor receptor domain  
ENSOGAP00000017913   0.00029   1013-1104   Growth factor receptor domain  
ENSOGAP00000018403   0.00235   449-510   Growth factor receptor domain  
ENSOGAP00000018758   0.00732   515-574   Growth factor receptor domain  
ENSOGAP00000019629   0.0173   78-135   Growth factor receptor domain  
ENSOGAP00000020334   0.00606   480-539,602-609   Growth factor receptor domain  
ENSOGAP00000020713   0.00269   19-66   Growth factor receptor domain  
ENSOGAP00000021309   0.0034   548-607   Growth factor receptor domain  
ENSOGAP00000021658   0.00144   2-46,92-107   Growth factor receptor domain  
ENSOGAP00000022549   0.0044   348-408   Growth factor receptor domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   344964 344964
No Yes Homo sapiens 76_38 Human 736 406
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 116
No Yes Gorilla gorilla 76_3.1 Western gorilla 331 175
No Yes Pongo abelii 76_2 Sumatran orangutan 217 112
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 219 113
No Yes Papio anubis 76 Olive baboon 254 145
No Yes Macaca mulatta 76_1 Rhesus monkey 342 178
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 456 275
No Yes Otolemur garnettii 76_3 Small-eared galago 232 124
No Yes Microcebus murinus 76_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 76_5.0 Norway rat 236 144
No Yes Mus musculus 76_38 House mouse 411 220
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 222 117
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 198 100
No Yes Cavia porcellus 76_3 Domestic guinea pig 196 104
No Yes Oryctolagus cuniculus 76_2 Rabbit 219 109
No Yes Ochotona princeps 76 American pika 169 92
No Yes Tupaia belangeri 76 Northern tree shrew 116 76
No Yes Sus scrofa 76_10.2 Pig 230 126
No Yes Bos taurus 76_3.1 Cattle 240 119
No Yes Ovis aries 76_3.1 Sheep 242 123
No Yes Vicugna pacos 76_1 Alpaca 100 55
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 197 107
No Yes Mustela putorius furo 76_1.0 Domestic ferret 256 126
No Yes Ailuropoda melanoleuca 76_1 Giant panda 260 133
No Yes Canis familiaris 76_3.1 Dog 344 164
No Yes Felis catus 76_6.2 Domestic cat 217 120
No Yes Equus caballus 76_2 Horse 346 154
No Yes Myotis lucifugus 76_2.0 Little brown bat 186 110
No Yes Pteropus vampyrus 76_1 Large flying fox 205 105
No Yes Sorex araneus 76_1 European shrew 99 59
No Yes Erinaceus europaeus 76 Western European hedgehog 123 72
No Yes Procavia capensis 76_1 Cape rock hyrax 162 94
No Yes Loxodonta africana 76_3 African savanna elephant 283 146
No Yes Echinops telfairi 76 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 222 131
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 76_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 208 123
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 237 126
No Yes Ornithorhynchus anatinus 76_5 Platypus 178 109
No Yes Saccoglossus kowalevskii v3.0   846 213
No Yes Petromyzon marinus 76_7.0 Sea lamprey 105 61
No Yes Meleagris gallopavo 76_2 Turkey 187 109
No Yes Gallus gallus 76_4 Chicken 209 112
No Yes Anas platyrhynchos 76_1.0 Mallard 173 87
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 187 102
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 217 115
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 207 119
No Yes Anolis carolinensis 76_2.0 Green anole 231 121
No Yes Xenopus laevis African clawed frog 285 201
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 269 158
No Yes Latimeria chalumnae 76_1 Coelacanth 310 166
No Yes Lepisosteus oculatus 76 Spotted gar 377 184
No Yes Gadus morhua 76_1 Atlantic cod 269 156
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 401 182
No Yes Takifugu rubripes 76_4 Torafugu 1082 620
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 316 186
No Yes Oryzias latipes 76_1 Japanese medaka 328 195
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 285 159
No Yes Poecilia formosa 76 Amazon molly 306 161
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 357 209
No Yes Astyanax mexicanus 76 Mexican tetra 284 174
No Yes Danio rerio 76_9 Zebrafish 479 256
No Yes Oikopleura dioica   254 92
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 820 276
No Yes Ciona intestinalis 76 Vase tunicate 203 93
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 785 270
No Yes Adineta vaga   119 73
No Yes Octopus bimaculoides 280   179 106
No Yes Crassostrea gigas 22 Pacific oyster 461 216
No Yes Lottia gigantea Owl limpet 168 101
No Yes Helobdella robusta   167 88
No Yes Capitella sp. I   333 186
No Yes Danaus plexippus OGS1.0 Monarch butterfly 72 33
No Yes Heliconius melpomene Postman butterfly 64 28
No Yes Bombyx mori Domestic silkworm 60 36
No Yes Nasonia vitripennis Jewel wasp 49 19
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 303 137
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 79 28
No Yes Linepithema humile v1.1 Argentine ant 47 28
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 49 26
No Yes Solenopsis invicta v.2.2.3 Red fire ant 31 25
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 82 31
No Yes Atta cephalotes v1.1   42 29
No Yes Camponotus floridanus v3.3 Florida carpenter ant 82 31
No Yes Lucilia cuprina Australian sheep blowfly 66 34
No Yes Drosophila grimshawi 1.3   64 35
No Yes Drosophila willistoni 1.3   55 35
No Yes Drosophila pseudoobscura 2.13   66 36
No Yes Drosophila persimilis 1.3   57 36
No Yes Drosophila suzukii   60 33
No Yes Drosophila yakuba 1.3   64 37
No Yes Drosophila simulans 1.3   45 31
No Yes Drosophila sechellia 1.3   60 34
No Yes Drosophila melanogaster 76_5 Fruit fly 288 126
No Yes Drosophila erecta 1.3   61 34
No Yes Drosophila ananassae 1.3   56 34
No Yes Drosophila virilis 1.2   62 35
No Yes Drosophila mojavensis 1.3   60 35
No Yes Megaselia scalaris 22   16 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 79 43
No Yes Culex pipiens quinquefasciatus Southern house mosquito 65 36
No Yes Anopheles darlingi 22 American malaria mosquito 49 27
No Yes Anopheles gambiae 49_3j African malaria mosquito 77 37
No Yes Tribolium castaneum 3.0 Red flour beetle 82 31
No Yes Pediculus humanus corporis (Early assembly) Human body louse 75 33
No Yes Acyrthosiphon pisum Pea aphid 45 19
No Yes Rhodnius prolixus 22   66 30
No Yes Daphnia pulex Common water flea 94 48
No Yes Strigamia maritima 22   81 42
No Yes Sarcoptes scabiei   44 28
No Yes Tetranychus urticae Two-spotted spider mite 52 32
No Yes Ixodes scapularis (Preliminary) Black-legged tick 58 32
No Yes Pristionchus pacificus   66 37
No Yes Meloidogyne incognita Southern root-knot nematode 29 17
No Yes Meloidogyne hapla   14 8
No Yes Onchocerca volvulus 22   48 24
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 72 44
No Yes Caenorhabditis japonica   44 29
No Yes Caenorhabditis brenneri   55 38
No Yes Caenorhabditis remanei   53 33
No Yes Caenorhabditis elegans 76_235 Roundworm 120 56
No Yes Caenorhabditis briggsae 2   41 27
No Yes Trichinella spiralis 22   48 32
No Yes Hymenolepis microstoma   55 28
No Yes Echinococcus multilocularis   37 17
No Yes Echinococcus granulosus   38 18
No Yes Taenia solium Pork tapeworm 34 19
No Yes Schistosoma mansoni   42 24
No Yes Mnemiopsis leidyi Sea walnut 232 121
No Yes Thelohanellus kitauei   3 3
No Yes Acropora digitifera v1.0   336 164
No Yes Nematostella vectensis 1.0 Starlet sea anemone 318 190
No Yes Hydra vulgaris   194 76
No Yes Amphimedon queenslandica   284 130
No Yes Trichoplax adhaerens   239 82
No Yes Proterospongia sp. ATCC 50818   182 81
No Yes Monosiga brevicollis   108 63
No Yes Sphaeroforma arctica JP610   21 18
No Yes Capsaspora owczarzaki ATCC 30864   177 137
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 4
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Rhizomucor miehei CAU432   2 2
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   3 1
No Yes Rhodotorula graminis WP1 v1.0   6 4
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   17 14
No Yes Sphaerobolus stellatus v1.0   3 1
No Yes Piloderma croceum F 1598 v1.0   3 1
No Yes Coniophora puteana   3 1
No Yes Hydnomerulius pinastri v2.0   3 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 2
No Yes Pisolithus microcarpus 441 v1.0   3 1
No Yes Pisolithus tinctorius Marx 270 v1.0   3 1
No Yes Scleroderma citrinum Foug A v1.0   3 1
No Yes Coprinopsis cinerea okayama7 130 v3   9 5
No Yes Pleurotus ostreatus Oyster mushroom 9 5
No Yes Amanita thiersii Skay4041 v1.0   6 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 5 2
No Yes Galerina marginata v1.0   7 2
No Yes Hebeloma cylindrosporum h7 v2.0   7 3
No Yes Laccaria bicolor S238N-H82   7 3
No Yes Agaricus bisporus var. bisporus   6 2
No Yes Schizophyllum commune   3 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   3 1
No Yes Heterobasidion annosum   3 1
No Yes Gloeophyllum trabeumv1.0   4 2
No Yes Punctularia strigosozonata v1.0   10 8
No Yes Sebacina vermifera MAFF 305830 v1.0   4 3
No Yes Fomitiporia mediterranea v1.0   3 1
No Yes Tulasnella calospora AL13/4D v1.0   11 9
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 1
No Yes Fomitopsis pinicolav1.0   3 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   3 1
No Yes Phanerochaete chrysosporium RP-78 2.1   6 2
No Yes Dichomitus squalens   3 1
No Yes Trametes versicolor v1.0   6 3
No Yes Tremella mesenterica Witches' butter 3 1
No Yes Apiospora montagnei NRRL 25634 v1.0   3 3
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Fusarium graminearum   2 1
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   4 3
No Yes Fusarium verticillioides 7600   5 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Aspergillus fumigatus Af293   3 1
No Yes Neosartorya fischeri NRRL 181   3 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Candida albicans SC5314   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Spizellomyces punctatus DAOM BR117   5 5
No Yes Dictyostelium discoideum   20 8
No Yes Dictyostelium purpureum   17 11
No Yes Entamoeba dispar 1.2   353 129
No Yes Entamoeba invadens 1.2   2670 727
No Yes Entamoeba histolytica 1   286 93
No Yes Selaginella moellendorffii   1 1
No Yes Pinus taeda Loblolly pine 1 1
No Yes Eucalyptus grandis v201 Rose gum 13 13
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Glycine max v109 Soybean 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 4 4
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 4 4
No Yes Populus trichocarpa v156 Black cottonwood 9 9
No Yes Vitis vinifera Wine grape 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 5 5
No Yes Aquilegia coerulea v195   10 10
No Yes Triticum urartu 22   20 20
No Yes Triticum aestivum 22 Bread wheat 53 53
No Yes Aegilops tauschii 22   25 25
No Yes Brachypodium distachyon Stiff brome 22 22
No Yes Oryza barthii 22 African wild rice 22 21
No Yes Oryza meridionalis 22   24 24
No Yes Oryza glumaepatula 22   41 41
No Yes Oryza glaberrima African rice 8 8
No Yes Oryza punctata 22   26 26
No Yes Oryza nivara 22   42 35
No Yes Oryza brachyantha 22 Malo sina 14 14
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 23 23
No Yes Oryza sativa v193 Rice 25 25
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 9 9
No Yes Panicum virgatum v202 Switchgrass 37 37
No Yes Setaria italica v164 Foxtail millet 22 22
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 9 9
No Yes Sorghum bicolor Sorghum 14 14
No Yes Musa balbisiana Balbis banana 6 5
No Yes Musa acuminata 22 Wild Malaysian banana 10 10
No Yes Coccomyxa subellipsoidea sp. C-169 v2   5 5
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   115 65
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   8 5
No Yes Volvox carteri v199   9 6
No Yes Chlamydomonas reinhardtii 4.0   22 13
No Yes Ostreococcus sp. RCC809   11 8
No Yes Ostreococcus lucimarinus CCE9901   11 8
No Yes Ostreococcus tauri   8 6
No Yes Bathycoccus prasinos   6 6
No Yes Micromonas sp. RCC299   23 16
No Yes Micromonas pusilla CCMP1545 v3.0   18 9
No Yes Cyanidioschyzon merolae strain 10D 22   5 1
No Yes Cyanidioschyzon merolae   5 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   92 85
No Yes Bigelowiella natans CCMP2755 22   42 16
No Yes Giardia lamblia 2.3   618 228
No Yes Cyanophora paradoxa   180 104
No Yes Leishmania mexicana 2.4   11 7
No Yes Leishmania major strain Friedlin   15 12
No Yes Leishmania infantum JPCM5 2.4   12 9
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   18 13
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   26 7
No Yes Aureococcus anophagefferens   86 52
No Yes Albugo laibachii 22   18 7
No Yes Pythium iwayamai DAOM BR242034 22   25 7
No Yes Pythium arrhenomanes ATCC 12531 22   12 8
No Yes Pythium ultimum v1.7-2   25 12
No Yes Pythium aphanidermatum DAOM BR444 22   10 8
No Yes Pythium irregulare DAOM BR486 22   12 9
No Yes Pythium vexans DAOM BR484 22   25 11
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 12 5
No Yes Phytophthora sojae 1.1   17 6
No Yes Phytophthora infestans T30-4   24 11
No Yes Phytophthora capsici   4 4
No Yes Hyaloperonospora arabidopsidis 22   5 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Thalassiosira pseudonana CCMP1335   2 1
No Yes Perkinsus marinus ATCC 50983   9 6
No Yes Paramecium tetraurelia   1622 428
No Yes Tetrahymena thermophila SB210 1   2980 799
No Yes Ichthyophthirius multifiliis strain G5   398 137
No Yes Cryptosporidium hominis   11 8
No Yes Cryptosporidium muris   17 9
No Yes Cryptosporidium parvum Iowa II   11 8
No Yes Neospora caninum   70 24
No Yes Toxoplasma gondii VEG   51 22
No Yes Toxoplasma gondii ME49   50 22
No Yes Toxoplasma gondii GT1   43 23
No Yes Babesia bovis T2Bo   16 8
No Yes Theileria parva   8 6
No Yes Theileria annulata   7 4
No Yes Plasmodium falciparum 3D7   6 4
No Yes Plasmodium vivax SaI-1 7.0   11 6
No Yes Plasmodium knowlesi strain H   7 4
No Yes Plasmodium yoelii ssp. yoelii 1   6 4
No Yes Plasmodium chabaudi   8 5
No Yes Plasmodium berghei ANKA   8 5
No Yes Symbiodinium minutum clade B1 v1.2   278 181
No Yes Naegleria gruberi   36 29
No Yes Trichomonas vaginalis   58 37
No Yes Guillardia theta CCMP2712 v1.0   409 172
No Yes Emiliania huxleyi CCMP1516   15 12
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Ilumatobacter coccineus   3 1
No Yes Filifactor alocis ATCC 35896   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Haliangium ochraceum DSM 14365   4 4
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   2 2
No Yes Myxococcus fulvus HW-1   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 318 205
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 152 94
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 80 45
No Yes Ascaris suum Victoria/Ghent Pig roundworm 66 36
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 66 43
No Yes Cryptococcus neoformans var. grubii H99   3 1
No Yes Cryptococcus neoformans B-3501A   2 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Candida albicans WO-1   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 19 19
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 26 26
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   70 24
No Yes Plasmodium falciparum HB3   4 3
No Yes Plasmodium falciparum Dd2   4 3
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 767 418
No Yes Homo sapiens (NCBI version) Human 381 199
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 224 124
No Yes Heliconius numata (Incomplete)   12 11
No Yes Loa loa v3.3 (Request) Eye worm 48 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 43 32
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 36 21
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 4 4
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 274 135
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 213 113
No Yes Gorilla gorilla 69_3.1 Western gorilla 216 118
No Yes Pongo abelii 69_2 Sumatran orangutan 208 108
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 209 109
No Yes Macaca mulatta 69_1 Rhesus monkey 223 109
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 215 121
No Yes Otolemur garnettii 69_3 Small-eared galago 232 124
No Yes Microcebus murinus 69_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 69_3.4 Norway rat 212 118
No Yes Mus musculus 69_38 House mouse 225 123
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 221 116
No Yes Cavia porcellus 69_3 Domestic guinea pig 191 100
No Yes Oryctolagus cuniculus 69_2 Rabbit 195 98
No Yes Ochotona princeps 69 American pika 169 92
No Yes Tupaia belangeri 69 Northern tree shrew 116 76
No Yes Sus scrofa 69_10.2 Pig 189 107
No Yes Bos taurus 69_3.1 Cattle 227 115
No Yes Vicugna pacos 69_1 Alpaca 100 55
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 195 105
No Yes Mustela putorius furo 69_1.0 Domestic ferret 245 124
No Yes Ailuropoda melanoleuca 69_1 Giant panda 228 118
No Yes Canis familiaris 69_3.1 Dog 228 118
No Yes Felis catus 69 Domestic cat 140 76
No Yes Equus caballus 69_2 Horse 211 114
No Yes Myotis lucifugus 69_2.0 Little brown bat 180 104
No Yes Pteropus vampyrus 69_1 Large flying fox 205 105
No Yes Sorex araneus 69_1 European shrew 99 59
No Yes Erinaceus europaeus 69 Western European hedgehog 123 72
No Yes Procavia capensis 69_1 Cape rock hyrax 161 93
No Yes Loxodonta africana 69_3 African savanna elephant 215 115
No Yes Echinops telfairi 69 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 110 69
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 69_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 168 103
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 225 120
No Yes Ornithorhynchus anatinus 69_5 Platypus 167 100
No Yes Petromyzon marinus 69_7.0 Sea lamprey 100 57
No Yes Meleagris gallopavo 69_2 Turkey 165 94
No Yes Gallus gallus 69_2 Chicken 183 91
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 185 100
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 174 99
No Yes Anolis carolinensis 69_2.0 Green anole 201 105
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 228 134
No Yes Latimeria chalumnae 69_1 Coelacanth 253 135
No Yes Gadus morhua 69_1 Atlantic cod 236 135
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 260 134
No Yes Takifugu rubripes 69_4 Torafugu 251 136
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 260 142
No Yes Oryzias latipes 69_1 Japanese medaka 252 143
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 283 157
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 273 156
No Yes Danio rerio 69_9 Zebrafish 330 175
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 243 76
No Yes Ciona intestinalis 69 Vase tunicate 180 83
No Yes Drosophila melanogaster 69_5 Fruit fly 65 35
No Yes Caenorhabditis elegans 69_215 Roundworm 44 30
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   6 5
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   3 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes NCBI 2017_08 genome   135415 65222
No Yes Protozoadb 2010_08 (Protozoadb)   2937 1215
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   4 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   13097 6054
No Yes Uniprot 2018_03 genome   103232 50551
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   383 304
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   7 6
No Yes PDB chains (SCOP 1.75) (PDB)   28 21
No Yes Protein Data Bank (all PDB sequenc)   316 238
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   330 330
No Yes TargetDB (Targets)   328 153
No Yes UniProt viral sequences (Viral)   14 13

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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