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  Home > Genomes > Bombyx mori > EGF/Laminin domains


EGF/Laminin superfamily domain assignments
in
Bombyx mori

Assignment details

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Bombyx mori has 149 significant domains in 65 proteins.

     

Sequence ID   Evalue   Region   Family  
Bmb000236   0.0000112   377-408   EGF-type module  
  0.000921   683-719   EGF-type module  
Bmb000927   0.00000154   51-90   EGF-type module  
Bmb001064   0.000000356   481-519   Integrin beta EGF-like domains  
  0.00014   525-568   Integrin beta EGF-like domains  
  0.00474   397-416   Integrin beta EGF-like domains  
  0.0112   350-377   Integrin beta EGF-like domains  
Bmb001124   0.0000000812   154-190   EGF-type module  
Bmb002338   0.00000226   21-52   EGF-type module  
Bmb002356   0.000000000176   255-300   EGF-type module  
  0.00000000547   228-268   EGF-type module  
Bmb004636   0.00000102   441-477   EGF-type module  
  0.0126   211-231   EGF-type module  
Bmb004638   0.000000000046   197-239   EGF-type module  
  0.000000000357   120-162   EGF-type module  
  0.000000000686   303-350   EGF-type module  
  0.00000000196   158-201   EGF-type module  
  0.0000000161   386-432   EGF-type module  
  0.00000554   346-383   EGF-type module  
  0.00553   283-310   EGF-type module  
  0.0099   235-255   EGF-type module  
Bmb004959   0.0000903   55-83   EGF-type module  
  0.0000921   22-55   EGF-type module  
Bmb005386   0.00000000151   5-52   EGF-type module  
  0.00000000304   46-83   EGF-type module  
  0.0000768   88-114   EGF-type module  
Bmb005389   0.00000000000245   157-198   EGF-type module  
  0.0000000000259   195-238   EGF-type module  
  0.0000000000464   648-690   EGF-type module  
  0.000000000129   233-272   EGF-type module  
  0.000000000138   610-652   EGF-type module  
  0.00000000173   271-317   EGF-type module  
  0.00000000285   686-734   EGF-type module  
  0.0000000108   526-563   EGF-type module  
  0.0000000429   765-802   EGF-type module  
  0.0000000901   724-765   EGF-type module  
  0.000000293   843-881   EGF-type module  
  0.00000031   805-841   EGF-type module  
  0.000000725   311-343   EGF-type module  
  0.00000493   580-614   EGF-type module  
  0.0108   354-378   EGF-type module  
Bmb006621   0.0000000000921   339-404   Laminin-type module  
  0.000000022   514-552   Laminin-type module  
  0.0000000419   463-506   Laminin-type module  
  0.0000000691   276-341   Laminin-type module  
  0.000000446   402-460   Laminin-type module  
  0.00391   780-808   Laminin-type module  
Bmb007204   0.0000000000698   644-695   Laminin-type module  
  0.000000000977   221-283   Laminin-type module  
  0.00000000254   359-414   Laminin-type module  
  0.00000474   747-786   Laminin-type module  
  0.00000977   700-749   Laminin-type module  
  0.0000725   324-361   Laminin-type module  
  0.000725   607-646   EGF-type module  
  0.0586   281-320   Laminin-type module  
Bmb008243   0.000000949   1245-1292   Laminin-type module  
  0.00103   1298-1333   Laminin-type module  
  0.00949   1182-1207   EGF-type module  
Bmb009873   0.00000293   40-76   EGF-type module  
Bmb010043   0.00000000795   247-291   Laminin-type module  
  0.0000001   301-355   Laminin-type module  
  0.0000502   98-137   Laminin-type module  
  0.000837   418-458   Laminin-type module  
  0.0243   359-384   Laminin-type module  
Bmb010415   0.00000103   183-222   EGF-type module  
Bmb010738   0.00000434   659-696   EGF-type module  
  0.000454   222-263   EGF-type module  
Bmb010742   0.000000586   570-611   Laminin-type module  
Bmb011914   0.000000000875   1013-1057   EGF-type module  
  0.000251   89-121   EGF-type module  
  0.000691   60-85   EGF-type module  
Bmb011918   0.0000000000318   174-223   EGF-type module  
  0.000000000113   51-101   EGF-type module  
  0.000000000415   211-254   EGF-type module  
Bmb012475   0.00000571   34-71   EGF-type module  
Bmb012555   0.00000368   621-667   Laminin-type module  
  0.0263   520-556   EGF-type module  
  0.0376   558-591   EGF-type module  
Bmb012645   0.000000000329   126-164   EGF-type module  
Bmb013465   0.00000000000136   59-100   EGF-type module  
Bmb014302   0.000000251   73-117   EGF-type module  
  0.00402   42-80   EGF-type module  
Bmb014430   0.000000000167   445-493   Laminin-type module  
  0.0000000725   491-532   Laminin-type module  
  0.0000000753   687-737   Laminin-type module  
  0.000000206   542-589   Laminin-type module  
  0.000000446   740-779   Laminin-type module  
  0.00000067   225-287   Laminin-type module  
  0.000000837   285-341   Laminin-type module  
  0.00000137   587-634   Laminin-type module  
  0.00000474   355-402   Laminin-type module  
  0.0000181   400-440   Laminin-type module  
  0.000053   632-684   Laminin-type module  
Bmb017305   0.0000516   191-227   EGF-type module  
  0.0000869   154-191   EGF-type module  
Bmb018168   0.00000000789   259-301   EGF-type module  
  0.00000000822   227-266   EGF-type module  
  0.0000000299   145-190   EGF-type module  
  0.0000000518   187-224   EGF-type module  
Bmb018395   0.00000000875   756-793   EGF-type module  
  0.00000168   642-680   EGF-type module  
Bmb018825   0.000000000272   261-314   Laminin-type module  
  0.000000000921   211-263   Laminin-type module  
  0.00000000106   153-195   Laminin-type module  
  0.0000000335   314-363   Laminin-type module  
  0.00000272   361-410   Laminin-type module  
  0.0000565   117-155   EGF-type module  
  0.0000607   408-453   Laminin-type module  
Bmb018899   0.0000000067   10-44   Laminin-type module  
Bmb019109   0.0000419   440-477   EGF-type module  
Bmb019659   0.00000000237   252-296   EGF-type module  
  0.000000114   288-325   EGF-type module  
Bmb019660   0.0000000709   85-130   EGF-type module  
Bmb020838   0.000000000391   244-301   Laminin-type module  
Bmb023949   0.000000126   1024-1072   Laminin-type module  
  0.00000109   901-936   EGF-type module  
Bmb024397   0.0000000153   449-486   EGF-type module  
Bmb025761   0.000000454   646-683   EGF-type module  
  0.0205   689-717   EGF-type module  
Bmb025867   0.00000000000248   1188-1229   EGF-type module  
  0.000000000628   1149-1192   EGF-type module  
  0.000000000949   1265-1307   EGF-type module  
  0.0000000102   1303-1345   EGF-type module  
  0.0000000297   1080-1121   EGF-type module  
  0.0000000858   1225-1269   EGF-type module  
  0.0000151   1113-1149   EGF-type module  
Bmb025915   0.0000000134   107-145   EGF-type module  
  0.0000932   73-107   EGF-type module  
Bmb025917   0.0000168   301-343   EGF-type module  
Bmb028338   0.00000541   342-369   EGF-type module  
Bmb028757   0.00000000159   137-182   EGF-type module  
  0.00000000915   708-756   EGF-type module  
  0.0000000185   463-511   EGF-type module  
  0.000000368   384-424   EGF-type module  
  0.00000662   1244-1275   EGF-type module  
  0.0000231   978-1024   EGF-type module  
  0.0145   1350-1382   Laminin-type module  
Bmb030195   0.0000021   361-401   EGF-type module  
  0.0000678   326-358   EGF-type module  
Bmb030421   0.0000000000311   151-198   EGF-type module  
  0.00000000395   450-502   EGF-type module  
Bmb030580   0.0000000583   94-143   EGF-type module  
  0.0000016   175-203   EGF-type module  
Bmb030582   0.00000241   326-377   EGF-type module  
Bmb032703   0.0000114   142-167   EGF-type module  
Bmb033978   0.00000014   50-94   EGF-type module  
  0.00000126   89-135   EGF-type module  
Bmb034664   0.000000000212   15-63   Laminin-type module  
  0.00000949   68-103   Laminin-type module  
Bmb034939   0.000000000000873   140-188   EGF-type module  
  0.0000000000734   468-518   EGF-type module  
  0.00000607   110-150   EGF-type module  
  0.0216   305-338   EGF-type module  
Bmb034987   0.0000046   86-135   EGF-type module  
  0.00000698   46-84   EGF-type module  
  0.0124   549-567   EGF-type module  
Bmb035832   0.000000234   40-90   EGF-type module  
Bmb036301   0.0000921   96-143   Laminin-type module  
  0.0176   42-94   Laminin-type module  
Bmb036400   0.00000000142   158-205   EGF-type module  
  0.00263   131-168   EGF-type module  
  0.0324   473-514   EGF-type module  
Bmb036661   0.0000000206   1358-1395   EGF-type module  
  0.000000165   1397-1434   EGF-type module  
  0.000000385   1318-1358   EGF-type module  
  0.00042   1258-1317   EGF-type module  
Bmb037787   0.0000000363   92-132   Laminin-type module  
  0.0000469   56-94   Laminin-type module  
  0.000176   148-194   Laminin-type module  
  0.001   398-434   Laminin-type module  
Bmb038051   0.000000000122   224-273   EGF-type module  
  0.000107   194-233   EGF-type module  
Bmb038733   0.00000046   57-97   Laminin-type module  
Bmb038906   0.00000000623   72-128   EGF-type module  
  0.0354   118-145   EGF-type module  
Bmb041378   0.00000000307   143-181   Laminin-type module  
  0.00000000391   31-89   Laminin-type module  
  0.000000307   92-135   Laminin-type module  
Bmb041702   0.000000000948   72-110   EGF-type module  
  0.00000000303   96-144   EGF-type module  
Bmb041860   0.0000123   67-111   Laminin-type module  
Bmb043111   0.00000000155   170-206   EGF-type module  
 
Weak hits:
Bmb000463   0.0103   30-52   EGF-type module  
Bmb002166   0.000233   265-289   EGF-type module  
  0.000271   330-353   Integrin beta EGF-like domains  
  0.000773   294-321   EGF-type module  
Bmb002264   0.00502   979-1003   EGF-type module  
  0.0197   1079-1103   Integrin beta EGF-like domains  
  0.0389   948-971   EGF-type module  
  0.0419   883-907   Integrin beta EGF-like domains  
  0.067   912-938   EGF-type module  
Bmb007641   0.000112   485-528   EGF-type module  
Bmb009823   0.0137   378-423   EGF-type module  
  0.0293   421-466   Laminin-type module  
  0.0335   330-369   EGF-type module  
  0.0419   77-106   Laminin-type module  
Bmb009864   0.00265   457-494   Integrin beta EGF-like domains  
Bmb009906   0.00599   564-597   EGF-type module  
  0.00754   355-388   EGF-type module  
  0.008   878-906   EGF-type module  
  0.0686   776-806   EGF-type module  
Bmb009907   0.0837   787-821   EGF-type module  
  0.0837   1739-1772   EGF-type module  
  0.0921   3749-3781   EGF-type module  
Bmb010603   0.00977   47-79   EGF-like domain of nidogen-1  
Bmb010737   0.000109   63-99   EGF-type module  
Bmb011281   0.000854   348-382   EGF-type module  
  0.0239   554-587   EGF-type module  
  0.0383   1188-1220   EGF-type module  
Bmb012473   0.0865   501-533   EGF-type module  
Bmb015289   0.0053   509-534   Integrin beta EGF-like domains  
  0.0159   578-618   Integrin beta EGF-like domains  
Bmb015290   0.00307   454-482   Integrin beta EGF-like domains  
  0.0781   425-451   Integrin beta EGF-like domains  
Bmb015779   0.0293   261-298   Integrin beta EGF-like domains  
Bmb016189   0.0393   104-130   Integrin beta EGF-like domains  
Bmb020453   0.00102   130-166   EGF-type module  
Bmb023825   0.000234   34-61   EGF-type module  
Bmb024347   0.00201   95-118   Follistatin (FS) module N-terminal domain, FS-N  
Bmb025466   0.000201   898-943   EGF-type module  
Bmb025866   0.00978   4-23   EGF-type module  
Bmb030581   0.000574   331-383   EGF-type module  
  0.00419   46-87   EGF-type module  
Bmb031456   0.000119   3-37   EGF-type module  
Bmb031807   0.0279   25-49   EGF-type module  
Bmb032750   0.00725   32-67   Integrin beta EGF-like domains  
Bmb033687   0.00513   689-722   EGF-type module  
  0.0397   757-787   EGF-type module  
  0.067   218-252   EGF-type module  
Bmb035535   0.0246   13-43   EGF-like domain of nidogen-1  
Bmb037461   0.000251   907-967   EGF-type module  
  0.00124   281-327   EGF-type module  
  0.00837   600-656   EGF-type module  
Bmb037462   0.00481   42-71   EGF-type module  
Bmb037900   0.0184   814-846   EGF-type module  
  0.0293   909-945   EGF-type module  
Bmb042147   0.000461   71-103   EGF-type module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   719145 719145
No Yes Homo sapiens 76_38 Human 1736 621
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 532 163
No Yes Gorilla gorilla 76_3.1 Western gorilla 876 233
No Yes Pongo abelii 76_2 Sumatran orangutan 539 174
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 555 171
No Yes Papio anubis 76 Olive baboon 634 191
No Yes Macaca mulatta 76_1 Rhesus monkey 925 318
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1183 386
No Yes Otolemur garnettii 76_3 Small-eared galago 551 171
No Yes Microcebus murinus 76_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 76_5.0 Norway rat 613 207
No Yes Mus musculus 76_38 House mouse 1015 344
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 515 145
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 529 164
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 521 161
No Yes Cavia porcellus 76_3 Domestic guinea pig 580 173
No Yes Oryctolagus cuniculus 76_2 Rabbit 478 160
No Yes Ochotona princeps 76 American pika 469 142
No Yes Tupaia belangeri 76 Northern tree shrew 407 132
No Yes Sus scrofa 76_10.2 Pig 585 211
No Yes Bos taurus 76_3.1 Cattle 632 189
No Yes Ovis aries 76_3.1 Sheep 602 193
No Yes Vicugna pacos 76_1 Alpaca 260 102
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 76_1.0 Domestic ferret 583 186
No Yes Ailuropoda melanoleuca 76_1 Giant panda 634 192
No Yes Canis familiaris 76_3.1 Dog 761 226
No Yes Felis catus 76_6.2 Domestic cat 592 185
No Yes Equus caballus 76_2 Horse 806 230
No Yes Myotis lucifugus 76_2.0 Little brown bat 502 169
No Yes Pteropus vampyrus 76_1 Large flying fox 529 164
No Yes Sorex araneus 76_1 European shrew 286 102
No Yes Erinaceus europaeus 76 Western European hedgehog 383 118
No Yes Procavia capensis 76_1 Cape rock hyrax 460 149
No Yes Loxodonta africana 76_3 African savanna elephant 690 216
No Yes Echinops telfairi 76 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 616 199
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 271 99
No Yes Macropus eugenii 76_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 621 199
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 616 176
No Yes Ornithorhynchus anatinus 76_5 Platypus 511 184
No Yes Saccoglossus kowalevskii v3.0   3261 466
No Yes Petromyzon marinus 76_7.0 Sea lamprey 221 94
No Yes Meleagris gallopavo 76_2 Turkey 509 175
No Yes Gallus gallus 76_4 Chicken 523 155
No Yes Anas platyrhynchos 76_1.0 Mallard 519 172
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 513 170
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 533 157
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 592 196
No Yes Anolis carolinensis 76_2.0 Green anole 539 160
No Yes Xenopus laevis African clawed frog 514 207
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 694 186
No Yes Latimeria chalumnae 76_1 Coelacanth 738 218
No Yes Lepisosteus oculatus 76 Spotted gar 888 241
No Yes Gadus morhua 76_1 Atlantic cod 618 198
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 299
No Yes Takifugu rubripes 76_4 Torafugu 2323 723
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 771 242
No Yes Oryzias latipes 76_1 Japanese medaka 740 228
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 627 196
No Yes Poecilia formosa 76 Amazon molly 687 203
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1051 282
No Yes Astyanax mexicanus 76 Mexican tetra 752 239
No Yes Danio rerio 76_9 Zebrafish 1139 389
No Yes Oikopleura dioica   459 149
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1671 332
No Yes Ciona intestinalis 76 Vase tunicate 438 155
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2661 612
No Yes Adineta vaga   1146 278
No Yes Octopus bimaculoides 280   748 217
No Yes Crassostrea gigas 22 Pacific oyster 874 287
No Yes Lottia gigantea Owl limpet 627 164
No Yes Helobdella robusta   407 130
No Yes Capitella sp. I   916 309
No Yes Danaus plexippus OGS1.0 Monarch butterfly 197 52
No Yes Heliconius melpomene Postman butterfly 184 46
No Yes Bombyx mori Domestic silkworm 149 65
No Yes Nasonia vitripennis Jewel wasp 168 39
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 745 159
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 213 49
No Yes Linepithema humile v1.1 Argentine ant 160 66
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 182 59
No Yes Solenopsis invicta v.2.2.3 Red fire ant 111 54
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 46
No Yes Atta cephalotes v1.1   189 65
No Yes Camponotus floridanus v3.3 Florida carpenter ant 206 46
No Yes Lucilia cuprina Australian sheep blowfly 189 47
No Yes Drosophila grimshawi 1.3   235 55
No Yes Drosophila willistoni 1.3   203 47
No Yes Drosophila pseudoobscura 2.13   219 52
No Yes Drosophila persimilis 1.3   189 52
No Yes Drosophila suzukii   233 53
No Yes Drosophila yakuba 1.3   214 47
No Yes Drosophila simulans 1.3   145 43
No Yes Drosophila sechellia 1.3   187 41
No Yes Drosophila melanogaster 76_5 Fruit fly 696 152
No Yes Drosophila erecta 1.3   215 44
No Yes Drosophila ananassae 1.3   210 48
No Yes Drosophila virilis 1.2   216 49
No Yes Drosophila mojavensis 1.3   212 46
No Yes Megaselia scalaris 22   77 32
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 222 54
No Yes Culex pipiens quinquefasciatus Southern house mosquito 204 55
No Yes Anopheles darlingi 22 American malaria mosquito 125 29
No Yes Anopheles gambiae 49_3j African malaria mosquito 196 51
No Yes Tribolium castaneum 3.0 Red flour beetle 229 58
No Yes Pediculus humanus corporis (Early assembly) Human body louse 220 55
No Yes Acyrthosiphon pisum Pea aphid 185 35
No Yes Rhodnius prolixus 22   183 44
No Yes Daphnia pulex Common water flea 256 74
No Yes Strigamia maritima 22   230 60
No Yes Sarcoptes scabiei   166 48
No Yes Tetranychus urticae Two-spotted spider mite 224 64
No Yes Ixodes scapularis (Preliminary) Black-legged tick 156 55
No Yes Pristionchus pacificus   229 96
No Yes Meloidogyne incognita Southern root-knot nematode 119 42
No Yes Meloidogyne hapla   76 37
No Yes Onchocerca volvulus 22   185 53
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 433 107
No Yes Caenorhabditis japonica   193 64
No Yes Caenorhabditis brenneri   302 105
No Yes Caenorhabditis remanei   276 100
No Yes Caenorhabditis elegans 76_235 Roundworm 528 152
No Yes Caenorhabditis briggsae 2   242 82
No Yes Trichinella spiralis 22   313 92
No Yes Hymenolepis microstoma   122 36
No Yes Echinococcus multilocularis   133 38
No Yes Echinococcus granulosus   126 38
No Yes Taenia solium Pork tapeworm 127 41
No Yes Schistosoma mansoni   123 45
No Yes Mnemiopsis leidyi Sea walnut 178 50
No Yes Thelohanellus kitauei   26 25
No Yes Acropora digitifera v1.0   831 347
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1039 372
No Yes Hydra vulgaris   350 115
No Yes Amphimedon queenslandica   433 151
No Yes Trichoplax adhaerens   574 125
No Yes Proterospongia sp. ATCC 50818   129 59
No Yes Monosiga brevicollis   53 30
No Yes Sphaeroforma arctica JP610   120 34
No Yes Capsaspora owczarzaki ATCC 30864   28 22
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   19 9
No Yes Dictyostelium purpureum   9 6
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 17 17
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   17 17
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 10 10
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 18 18
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 12 12
No Yes Cucumis sativus v122 Cucumber 6 5
No Yes Fragaria vesca Wild strawberry 15 13
No Yes Malus domestica v196 Apple 25 25
No Yes Prunus persica v139 Peach 11 11
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Populus trichocarpa v156 Black cottonwood 10 10
No Yes Vitis vinifera Wine grape 19 12
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 20 20
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   14 14
No Yes Triticum urartu 22   42 42
No Yes Triticum aestivum 22 Bread wheat 122 122
No Yes Aegilops tauschii 22   64 64
No Yes Brachypodium distachyon Stiff brome 26 25
No Yes Oryza barthii 22 African wild rice 59 49
No Yes Oryza meridionalis 22   53 44
No Yes Oryza glumaepatula 22   66 64
No Yes Oryza glaberrima African rice 31 31
No Yes Oryza punctata 22   44 41
No Yes Oryza nivara 22   56 52
No Yes Oryza brachyantha 22 Malo sina 38 38
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 50 49
No Yes Oryza sativa v193 Rice 51 50
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 16 16
No Yes Panicum virgatum v202 Switchgrass 77 76
No Yes Setaria italica v164 Foxtail millet 40 40
No Yes Zea mays subsp. mays Maize 18 17
No Yes Zea mays v181 Maize 20 19
No Yes Sorghum bicolor Sorghum 26 26
No Yes Musa balbisiana Balbis banana 14 13
No Yes Musa acuminata 22 Wild Malaysian banana 29 26
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   7 6
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   3 2
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   18 12
No Yes Giardia lamblia 2.3   26 14
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   10 9
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   7 6
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   6 4
No Yes Fragilariopsis cylindrus   14 10
No Yes Thalassiosira pseudonana CCMP1335   6 4
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   10 10
No Yes Tetrahymena thermophila SB210 1   4 4
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   7 6
No Yes Cryptosporidium muris   13 7
No Yes Cryptosporidium parvum Iowa II   12 7
No Yes Neospora caninum   12 7
No Yes Toxoplasma gondii VEG   12 6
No Yes Toxoplasma gondii ME49   14 8
No Yes Toxoplasma gondii GT1   8 5
No Yes Babesia bovis T2Bo   4 2
No Yes Theileria parva   1 1
No Yes Plasmodium falciparum 3D7   10 7
No Yes Plasmodium vivax SaI-1 7.0   12 8
No Yes Plasmodium knowlesi strain H   13 9
No Yes Plasmodium yoelii ssp. yoelii 1   8 5
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 6
No Yes Symbiodinium minutum clade B1 v1.2   10 7
No Yes Naegleria gruberi   15 13
No Yes Guillardia theta CCMP2712 v1.0   24 18
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 774 252
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 393 99
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 218 56
No Yes Ascaris suum Victoria/Ghent Pig roundworm 227 76
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 360 114
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 56 56
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42
No Yes Neospora caninum Nc-Liverpool 6.2   12 7
No Yes Plasmodium falciparum HB3   9 6
No Yes Plasmodium falciparum Dd2   6 4
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 1814 677
No Yes Homo sapiens (NCBI version) Human 877 288
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 556 169
No Yes Heliconius numata (Incomplete)   14 9
No Yes Loa loa v3.3 (Request) Eye worm 185 61
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 186 80
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 169 51
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 25 25
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 710 195
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 517 157
No Yes Gorilla gorilla 69_3.1 Western gorilla 571 161
No Yes Pongo abelii 69_2 Sumatran orangutan 519 168
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 495 156
No Yes Macaca mulatta 69_1 Rhesus monkey 556 172
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 578 165
No Yes Otolemur garnettii 69_3 Small-eared galago 549 170
No Yes Microcebus murinus 69_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 69_3.4 Norway rat 574 173
No Yes Mus musculus 69_38 House mouse 554 169
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 513 143
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 502 156
No Yes Cavia porcellus 69_3 Domestic guinea pig 558 163
No Yes Oryctolagus cuniculus 69_2 Rabbit 463 150
No Yes Ochotona princeps 69 American pika 469 142
No Yes Tupaia belangeri 69 Northern tree shrew 407 132
No Yes Sus scrofa 69_10.2 Pig 467 164
No Yes Bos taurus 69_3.1 Cattle 558 165
No Yes Vicugna pacos 69_1 Alpaca 260 102
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 69_1.0 Domestic ferret 565 183
No Yes Ailuropoda melanoleuca 69_1 Giant panda 551 166
No Yes Canis familiaris 69_3.1 Dog 552 165
No Yes Felis catus 69 Domestic cat 380 133
No Yes Equus caballus 69_2 Horse 546 178
No Yes Myotis lucifugus 69_2.0 Little brown bat 472 160
No Yes Pteropus vampyrus 69_1 Large flying fox 525 162
No Yes Sorex araneus 69_1 European shrew 286 102
No Yes Erinaceus europaeus 69 Western European hedgehog 383 118
No Yes Procavia capensis 69_1 Cape rock hyrax 458 148
No Yes Loxodonta africana 69_3 African savanna elephant 526 165
No Yes Echinops telfairi 69 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 322 125
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 267 97
No Yes Macropus eugenii 69_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 491 158
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 567 166
No Yes Ornithorhynchus anatinus 69_5 Platypus 452 168
No Yes Petromyzon marinus 69_7.0 Sea lamprey 203 84
No Yes Meleagris gallopavo 69_2 Turkey 471 152
No Yes Gallus gallus 69_2 Chicken 516 150
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 494 162
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 497 161
No Yes Anolis carolinensis 69_2.0 Green anole 510 157
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 553 156
No Yes Latimeria chalumnae 69_1 Coelacanth 639 183
No Yes Gadus morhua 69_1 Atlantic cod 547 170
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 693 221
No Yes Takifugu rubripes 69_4 Torafugu 677 202
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 659 191
No Yes Oryzias latipes 69_1 Japanese medaka 656 187
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 627 196
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 749 202
No Yes Danio rerio 69_9 Zebrafish 769 240
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 523 112
No Yes Ciona intestinalis 69 Vase tunicate 408 143
No Yes Drosophila melanogaster 69_5 Fruit fly 218 50
No Yes Caenorhabditis elegans 69_215 Roundworm 241 74
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_050719N (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   302166 90591
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   242 149
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   13 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 3
No Yes STRING v9.0.5 (STRING)   25827 7909
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 1
No Yes Uniprot 2018_03 genome   214533 69342
No Yes Global Ocean Sampling Expedition (GOS)   425 226
No Yes NCBI viral sequences (Viral)   27 26
No Yes PDB chains (SCOP 1.75) (PDB)   117 88
No Yes Protein Data Bank (all PDB sequenc)   1179 857
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2437 2434
No Yes TargetDB (Targets)   486 191
No Yes UniProt viral sequences (Viral)   82 69

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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