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  Home > Genomes > Papio anubis 76 > Growth factor receptor domain domains


Growth factor receptor domain superfamily domain assignments
in
Papio anubis 76

Assignment details

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Papio anubis 76 has 254 significant domains in 145 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000000089   0.0000000001   203-302   Growth factor receptor domain  
ENSPANP00000000306   0.0000471   3-102,423-484   Growth factor receptor domain  
ENSPANP00000000319   0.000000879   377-481   Growth factor receptor domain  
ENSPANP00000000616   0.000000000863   38-118   Growth factor receptor domain  
ENSPANP00000001215   0.00000000282   796-907   Growth factor receptor domain  
ENSPANP00000001417   0.000000000345   114-242   Growth factor receptor domain  
ENSPANP00000001441   0.000000000000251   135-260   Growth factor receptor domain  
  0.000000738   377-481   Growth factor receptor domain  
ENSPANP00000001557   9.26e-17   785-905   Growth factor receptor domain  
  0.000000000000549   664-784   Growth factor receptor domain  
  0.0000000000361   570-698   Growth factor receptor domain  
ENSPANP00000001596   6.75e-17   757-877   Growth factor receptor domain  
  0.00000000000104   638-756   Growth factor receptor domain  
  0.00000000000565   938-1090   Growth factor receptor domain  
  0.0000000000439   542-670   Growth factor receptor domain  
ENSPANP00000001653   0.00000000926   378-468,665-714   Growth factor receptor domain  
ENSPANP00000001739   0.00000000127   570-661   Growth factor receptor domain  
ENSPANP00000001792   0.000033   13-106,427-483   Growth factor receptor domain  
ENSPANP00000001896   4.71e-16   925-1052   Growth factor receptor domain  
  0.00000000000847   720-843   Growth factor receptor domain  
  0.0000000000173   806-925   Growth factor receptor domain  
  0.0000000691   1224-1307,1445-1506   Growth factor receptor domain  
ENSPANP00000002149   0.00000000188   233-352   Growth factor receptor domain  
ENSPANP00000002252   0.0000000033   341-466   Growth factor receptor domain  
ENSPANP00000002337   0.0000424   13-118   Growth factor receptor domain  
ENSPANP00000002539   3.45e-18   577-699   Growth factor receptor domain  
  6.28e-18   2171-2305   Growth factor receptor domain  
  1.73e-17   756-898   Growth factor receptor domain  
  4.55e-17   2493-2621   Growth factor receptor domain  
  1.43e-16   1890-2016   Growth factor receptor domain  
  7.85e-16   1070-1200   Growth factor receptor domain  
  0.00000000000000251   1360-1495   Growth factor receptor domain  
  0.00000000000000581   1452-1579   Growth factor receptor domain  
  0.000000000000011   1236-1378   Growth factor receptor domain  
  0.0000000000000204   2263-2380   Growth factor receptor domain  
  0.0000000000022   2618-2734   Growth factor receptor domain  
  0.000000000204   250-367   Growth factor receptor domain  
  0.000000000769   493-586   Growth factor receptor domain  
ENSPANP00000002729   0.00000000000957   51-121   Growth factor receptor domain  
ENSPANP00000002736   0.00000000000000113   334-454   Growth factor receptor domain  
  0.000000000000471   214-327   Growth factor receptor domain  
  0.000000138   422-452,509-604   Growth factor receptor domain  
ENSPANP00000002959   0.0000000000236   6-72   Growth factor receptor domain  
ENSPANP00000002992   0.000000000000675   109-233   Growth factor receptor domain  
ENSPANP00000003049   0.000000000847   549-587,702-748   Growth factor receptor domain  
ENSPANP00000003122   0.000000314   270-340,377-398   Growth factor receptor domain  
  0.0471   68-114   Growth factor receptor domain  
ENSPANP00000003192   6.04e-21   24-101   Growth factor receptor domain  
ENSPANP00000003329   1.88e-16   38-143   Growth factor receptor domain  
ENSPANP00000003380   0.00000267   252-325,360-380   Growth factor receptor domain  
ENSPANP00000003533   3.77e-18   761-841,877-890,1200-1244   Growth factor receptor domain  
  1.18e-16   385-426,671-769   Growth factor receptor domain  
ENSPANP00000003604   0.000000000000424   33-114   Growth factor receptor domain  
ENSPANP00000003775   3.53e-29   515-671   Growth factor receptor domain  
  2.89e-28   657-824   Growth factor receptor domain  
  8.17e-27   906-1063   Growth factor receptor domain  
  4.43e-19   428-530   Growth factor receptor domain  
  3.92e-17   816-933   Growth factor receptor domain  
ENSPANP00000003790   0.0000000785   726-840   Growth factor receptor domain  
  0.00581   1097-1246   Growth factor receptor domain  
  0.0942   1035-1118   Growth factor receptor domain  
ENSPANP00000003878   7.42e-25   505-636   Growth factor receptor domain  
  1.81e-19   186-339   Growth factor receptor domain  
ENSPANP00000003991   0.00000279   259-330,366-382   Growth factor receptor domain  
ENSPANP00000004122   5.96e-18   208-326   Growth factor receptor domain  
  0.0000000294   601-721   Growth factor receptor domain  
  0.000326   537-587   Growth factor receptor domain  
ENSPANP00000004200   2.88e-22   37-118   Growth factor receptor domain  
ENSPANP00000004327   0.0000000000000267   1268-1400   Growth factor receptor domain  
  0.000000000000416   544-668   Growth factor receptor domain  
  0.00000000000369   726-856   Growth factor receptor domain  
  0.0000000000152   915-1047   Growth factor receptor domain  
  0.0000000119   418-551   Growth factor receptor domain  
ENSPANP00000004369   0.0000000000000377   859-976   Growth factor receptor domain  
  0.0000000000000994   944-1058   Growth factor receptor domain  
  0.0000000000165   1191-1309   Growth factor receptor domain  
  0.000000000298   1126-1225   Growth factor receptor domain  
  0.00000000282   1739-1824   Growth factor receptor domain  
ENSPANP00000004424   0.000000000282   354-433,689-737   Growth factor receptor domain  
ENSPANP00000004547   0.0000011   569-644   Growth factor receptor domain  
  0.000173   249-396   Growth factor receptor domain  
  0.0596   20-98   Growth factor receptor domain  
ENSPANP00000004631   3.77e-24   24-106   Growth factor receptor domain  
ENSPANP00000005051   0.0000000000141   3803-3816,3847-3941   Growth factor receptor domain  
ENSPANP00000005073   9.42e-19   320-439   Growth factor receptor domain  
  5.18e-18   237-362   Growth factor receptor domain  
  2.24e-16   482-604   Growth factor receptor domain  
ENSPANP00000005106   0.000000000188   319-449   Growth factor receptor domain  
ENSPANP00000005188   0.0000000157   253-324,362-381   Growth factor receptor domain  
ENSPANP00000005240   0.0000000000000942   392-518   Growth factor receptor domain  
ENSPANP00000005269   0.0000000000000557   65-105   Growth factor receptor domain  
ENSPANP00000005284   0.0000408   803-902,931-986   Growth factor receptor domain  
  0.000188   2007-2134   Growth factor receptor domain  
  0.001   1368-1499   Growth factor receptor domain  
ENSPANP00000005383   0.000000000275   478-589   Growth factor receptor domain  
ENSPANP00000005606   3.77e-18   40-137   Growth factor receptor domain  
ENSPANP00000005634   0.00000000000455   51-120   Growth factor receptor domain  
ENSPANP00000005680   0.000000987   253-317,363-379   Growth factor receptor domain  
ENSPANP00000005717   0.00000000000785   281-412   Growth factor receptor domain  
ENSPANP00000005925   1.02e-18   50-131   Growth factor receptor domain  
ENSPANP00000006157   0.00000000000033   71-138   Growth factor receptor domain  
ENSPANP00000006739   8.63e-16   282-394,666-711   Growth factor receptor domain  
ENSPANP00000007012   0.000000000345   114-242   Growth factor receptor domain  
ENSPANP00000007210   0.0000157   67-113,507-542   Growth factor receptor domain  
ENSPANP00000007299   0.0000000000000596   120-248   Growth factor receptor domain  
ENSPANP00000007344   3.93e-22   499-629   Growth factor receptor domain  
  4.6e-19   179-332   Growth factor receptor domain  
ENSPANP00000007409   0.0000000628   25-139   Growth factor receptor domain  
ENSPANP00000007511   1.52e-18   384-425,670-769   Growth factor receptor domain  
  9.73e-16   761-841,877-890,1200-1244   Growth factor receptor domain  
ENSPANP00000007733   0.00000122   260-399   Growth factor receptor domain  
ENSPANP00000008045   0.0000000000151   36-113   Growth factor receptor domain  
ENSPANP00000008534   0.0000000000000173   179-335   Growth factor receptor domain  
ENSPANP00000008566   0.0000000000000126   64-106   Growth factor receptor domain  
ENSPANP00000008606   0.0000628   3-76,427-480   Growth factor receptor domain  
ENSPANP00000008658   0.0000000000000173   179-335   Growth factor receptor domain  
ENSPANP00000008730   0.0000161   250-320,361-374   Growth factor receptor domain  
ENSPANP00000008964   0.00000000000000235   400-492,733-784   Growth factor receptor domain  
  0.00000000173   833-951   Growth factor receptor domain  
ENSPANP00000009256   0.00000000000002   255-406   Growth factor receptor domain  
ENSPANP00000009312   6.91e-17   518-649   Growth factor receptor domain  
  3.45e-16   641-774   Growth factor receptor domain  
  0.00000000000173   858-981   Growth factor receptor domain  
  0.0000000000173   775-901   Growth factor receptor domain  
  0.00000000157   1511-1593   Growth factor receptor domain  
ENSPANP00000009330   0.0000000000148   298-420   Growth factor receptor domain  
ENSPANP00000009352   0.0000000000000298   153-280   Growth factor receptor domain  
ENSPANP00000009371   0.000000000133   66-197   Growth factor receptor domain  
ENSPANP00000009415   0.000000000345   103-209   Growth factor receptor domain  
ENSPANP00000009521   0.0000000000361   88-209   Growth factor receptor domain  
ENSPANP00000009533   0.00000377   74-142,193-206,492-530   Growth factor receptor domain  
ENSPANP00000009649   0.0000175   328-400   Growth factor receptor domain  
ENSPANP00000009807   0.0000000000000022   400-492,733-784   Growth factor receptor domain  
  0.00000000149   833-951   Growth factor receptor domain  
ENSPANP00000009864   0.000000217   46-190   Growth factor receptor domain  
ENSPANP00000010089   0.00000000000392   28-103   Growth factor receptor domain  
ENSPANP00000010554   9.42e-19   323-442   Growth factor receptor domain  
  5.02e-18   240-365   Growth factor receptor domain  
  2.93e-16   485-607   Growth factor receptor domain  
ENSPANP00000010747   4.39e-16   282-394,666-711   Growth factor receptor domain  
ENSPANP00000010773   0.00000000000235   573-702   Growth factor receptor domain  
  0.0000000000033   391-514   Growth factor receptor domain  
  0.0000000000141   270-438   Growth factor receptor domain  
  0.000000000129   1057-1167   Growth factor receptor domain  
  0.000000000455   813-934   Growth factor receptor domain  
ENSPANP00000010828   6.51e-16   162-294   Growth factor receptor domain  
  0.000000000314   33-165   Growth factor receptor domain  
ENSPANP00000010962   0.00000000173   798-904   Growth factor receptor domain  
  0.00000000675   543-662   Growth factor receptor domain  
ENSPANP00000011019   0.0000000377   158-194,308-391   Growth factor receptor domain  
ENSPANP00000011232   1.16e-21   2913-3017,3276-3337   Growth factor receptor domain  
  0.000000000000612   85-188,473-521   Growth factor receptor domain  
  0.00000000000314   1185-1263,1534-1578   Growth factor receptor domain  
ENSPANP00000011555   0.0000000000051   189-328   Growth factor receptor domain  
ENSPANP00000011705   0.00000000000000502   32-146   Growth factor receptor domain  
ENSPANP00000011885   7.07e-16   9-134   Growth factor receptor domain  
ENSPANP00000011926   0.00000000000000502   31-124   Growth factor receptor domain  
ENSPANP00000012020   0.0000115   260-322   Growth factor receptor domain  
ENSPANP00000012236   6.43e-19   125-263   Growth factor receptor domain  
ENSPANP00000012271   0.00000000173   798-904   Growth factor receptor domain  
  0.00000000675   543-662   Growth factor receptor domain  
ENSPANP00000012325   0.000000000000612   31-155   Growth factor receptor domain  
ENSPANP00000012373   0.0000000011   351-479   Growth factor receptor domain  
  0.00000000314   922-1047   Growth factor receptor domain  
  0.000000753   807-930   Growth factor receptor domain  
ENSPANP00000012477   8e-18   29-161   Growth factor receptor domain  
  1.57e-16   294-414   Growth factor receptor domain  
  0.00000000000561   640-800   Growth factor receptor domain  
  0.0000000298   159-294   Growth factor receptor domain  
ENSPANP00000013352   0.000000000000251   380-509   Growth factor receptor domain  
  0.0000000000141   669-795   Growth factor receptor domain  
ENSPANP00000013384   0.00000000000002   585-676   Growth factor receptor domain  
ENSPANP00000013477   0.0000000000243   196-351   Growth factor receptor domain  
ENSPANP00000013569   8e-17   283-420   Growth factor receptor domain  
ENSPANP00000013591   0.00000000518   973-1063,1261-1309   Growth factor receptor domain  
ENSPANP00000013606   0.000000000000675   135-278   Growth factor receptor domain  
  0.000471   259-309   Growth factor receptor domain  
ENSPANP00000014017   2.98e-18   1846-1977   Growth factor receptor domain  
  4.39e-17   534-654   Growth factor receptor domain  
  1.29e-16   448-576   Growth factor receptor domain  
  1.57e-16   1025-1166   Growth factor receptor domain  
  3.61e-16   1316-1450   Growth factor receptor domain  
  4.24e-16   2446-2573   Growth factor receptor domain  
  0.00000000000000377   1195-1322   Growth factor receptor domain  
  0.00000000000000518   2129-2258   Growth factor receptor domain  
  0.000000000000298   2571-2687   Growth factor receptor domain  
  0.0000000000188   723-849   Growth factor receptor domain  
ENSPANP00000014489   3.14e-16   24-139   Growth factor receptor domain  
ENSPANP00000014526   7.95e-35   594-758   Growth factor receptor domain  
  0.000000000000628   733-842   Growth factor receptor domain  
ENSPANP00000014716   2.98e-16   212-334   Growth factor receptor domain  
  0.000000000000439   28-69,157-259   Growth factor receptor domain  
ENSPANP00000014783   4.08e-17   5052-5195   Growth factor receptor domain  
  0.000000000000455   5283-5322,5402-5494   Growth factor receptor domain  
ENSPANP00000015260   4.79e-16   825-962   Growth factor receptor domain  
  0.00000000000173   562-701   Growth factor receptor domain  
  0.00000000000392   676-827   Growth factor receptor domain  
  0.0000361   325-431,482-525   Growth factor receptor domain  
ENSPANP00000015519   0.0000000000000091   34-111   Growth factor receptor domain  
ENSPANP00000015520   0.00000000000000895   25-102   Growth factor receptor domain  
ENSPANP00000015742   0.0000000000000267   358-489   Growth factor receptor domain  
  0.0000000000011   1089-1231   Growth factor receptor domain  
  0.00000000000753   207-375   Growth factor receptor domain  
  0.0000000000251   775-906   Growth factor receptor domain  
  0.0000000000282   548-676   Growth factor receptor domain  
  0.000000000314   905-1020   Growth factor receptor domain  
ENSPANP00000016034   7.53e-24   2709-2789,3045-3106   Growth factor receptor domain  
  0.000000000000188   4-63,340-387   Growth factor receptor domain  
  0.00000000091   1092-1123,1400-1439,1696-1745   Growth factor receptor domain  
  0.00000596   3582-3663   Growth factor receptor domain  
ENSPANP00000016366   0.0000000000926   389-518   Growth factor receptor domain  
ENSPANP00000016540   0.000000000000008   78-166   Growth factor receptor domain  
ENSPANP00000016681   6.28e-18   139-258   Growth factor receptor domain  
  0.00000000408   15-70,112-166   Growth factor receptor domain  
ENSPANP00000016873   1.21e-16   484-525,763-860   Growth factor receptor domain  
ENSPANP00000016916   3.71e-16   13-134   Growth factor receptor domain  
ENSPANP00000017063   0.000000000000033   444-573   Growth factor receptor domain  
  0.000000000816   737-863   Growth factor receptor domain  
ENSPANP00000017148   0.000000000408   257-375   Growth factor receptor domain  
ENSPANP00000017355   0.000000019   253-324,362-381   Growth factor receptor domain  
ENSPANP00000017555   0.00000000000408   268-390   Growth factor receptor domain  
ENSPANP00000017682   0.0000000000113   28-103   Growth factor receptor domain  
ENSPANP00000017772   0.0000000033   822-938   Growth factor receptor domain  
ENSPANP00000017877   0.00000135   261-334,370-392   Growth factor receptor domain  
ENSPANP00000018178   1.33e-16   38-143   Growth factor receptor domain  
ENSPANP00000018183   3.3e-18   38-136   Growth factor receptor domain  
ENSPANP00000018428   0.000000000138   24-94   Growth factor receptor domain  
ENSPANP00000018439   0.00000000000000126   305-385,650-706   Growth factor receptor domain  
  0.00000000000129   1352-1429,1690-1736   Growth factor receptor domain  
ENSPANP00000018720   0.0000000000204   33-106   Growth factor receptor domain  
ENSPANP00000018837   1.8e-16   2405-2540   Growth factor receptor domain  
  0.0000000000022   2641-2749   Growth factor receptor domain  
ENSPANP00000018873   1.02e-19   1265-1399   Growth factor receptor domain  
  1.18e-18   250-388   Growth factor receptor domain  
  5.81e-18   1071-1192   Growth factor receptor domain  
  0.00000000000000135   985-1110   Growth factor receptor domain  
  0.000000000000126   500-634   Growth factor receptor domain  
  0.000000000000361   376-513   Growth factor receptor domain  
  0.0000000000863   902-1027   Growth factor receptor domain  
ENSPANP00000018875   2.2e-18   12-140   Growth factor receptor domain  
  0.00000000643   172-267   Growth factor receptor domain  
ENSPANP00000018935   0.00000188   303-450   Growth factor receptor domain  
ENSPANP00000018936   0.00000173   282-429   Growth factor receptor domain  
ENSPANP00000018983   0.0000000439   39-161   Growth factor receptor domain  
ENSPANP00000018995   0.0000000000000847   497-623   Growth factor receptor domain  
  0.0000000000381   190-334   Growth factor receptor domain  
ENSPANP00000019066   0.00000000000282   32-114   Growth factor receptor domain  
ENSPANP00000019310   3.14e-31   701-864   Growth factor receptor domain  
  1.15e-30   1284-1446   Growth factor receptor domain  
  2.18e-28   502-653   Growth factor receptor domain  
  3.53e-28   1188-1346   Growth factor receptor domain  
  1.65e-27   949-1089   Growth factor receptor domain  
  6.28e-27   1048-1195   Growth factor receptor domain  
  1.83e-21   1434-1591   Growth factor receptor domain  
  0.00000000000000246   871-1006   Growth factor receptor domain  
ENSPANP00000019477   0.00000785   275-405   Growth factor receptor domain  
ENSPANP00000020554   6.6e-22   608-739   Growth factor receptor domain  
  2.36e-16   286-440   Growth factor receptor domain  
ENSPANP00000020597   9.42e-24   24-104   Growth factor receptor domain  
ENSPANP00000020645   0.0000392   12-73,404-447   Growth factor receptor domain  
ENSPANP00000020872   0.0000144   31-69   Growth factor receptor domain  
  0.0000942   236-312   Growth factor receptor domain  
ENSPANP00000020887   0.0000000000000973   50-137   Growth factor receptor domain  
 
Weak hits:
ENSPANP00000002394   0.033   7-101,422-486   Growth factor receptor domain  
ENSPANP00000002913   0.000295   435-496   Growth factor receptor domain  
ENSPANP00000003327   0.000449   266-331   Growth factor receptor domain  
ENSPANP00000004265   0.04   1999-2126   Growth factor receptor domain  
ENSPANP00000004860   0.0144   215-346   Growth factor receptor domain  
ENSPANP00000005286   0.0247   47-80   Growth factor receptor domain  
ENSPANP00000005409   0.000534   259-330,366-389   Growth factor receptor domain  
ENSPANP00000005513   0.000115   184-250,285-310   Growth factor receptor domain  
ENSPANP00000005803   0.000848   223-294,347-352   Growth factor receptor domain  
ENSPANP00000005989   0.000123   285-349,395-400   Growth factor receptor domain  
ENSPANP00000006082   0.0576   61-170   Growth factor receptor domain  
ENSPANP00000008713   0.000282   1455-1538   Growth factor receptor domain  
ENSPANP00000008950   0.0132   215-346   Growth factor receptor domain  
ENSPANP00000010928   0.00033   293-357,403-424   Growth factor receptor domain  
ENSPANP00000011523   0.00267   99-135,580-632   Growth factor receptor domain  
ENSPANP00000012460   0.0769   512-571   Growth factor receptor domain  
ENSPANP00000015083   0.000392   1114-1206   Growth factor receptor domain  
ENSPANP00000016157   0.0282   266-315,757-804   Growth factor receptor domain  
ENSPANP00000016597   0.00419   2-46,92-107   Growth factor receptor domain  
ENSPANP00000017201   0.000439   24-117,421-470,604-626   Growth factor receptor domain  
ENSPANP00000017202   0.00235   24-117,422-471,605-627   Growth factor receptor domain  
ENSPANP00000017363   0.0118   104-161   Growth factor receptor domain  
ENSPANP00000017860   0.00129   468-499,603-706   Growth factor receptor domain  
ENSPANP00000018939   0.00065   398-464   Growth factor receptor domain  
ENSPANP00000019170   0.00298   220-336   Growth factor receptor domain  
ENSPANP00000019998   0.0824   11-73   Growth factor receptor domain  
ENSPANP00000020643   0.0769   72-106,147-153,411-431   Growth factor receptor domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   344964 344964
No Yes Homo sapiens 76_38 Human 736 406
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 116
No Yes Gorilla gorilla 76_3.1 Western gorilla 331 175
No Yes Pongo abelii 76_2 Sumatran orangutan 217 112
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 219 113
No Yes Papio anubis 76 Olive baboon 254 145
No Yes Macaca mulatta 76_1 Rhesus monkey 342 178
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 456 275
No Yes Otolemur garnettii 76_3 Small-eared galago 232 124
No Yes Microcebus murinus 76_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 76_5.0 Norway rat 236 144
No Yes Mus musculus 76_38 House mouse 411 220
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 222 117
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 198 100
No Yes Cavia porcellus 76_3 Domestic guinea pig 196 104
No Yes Oryctolagus cuniculus 76_2 Rabbit 219 109
No Yes Ochotona princeps 76 American pika 169 92
No Yes Tupaia belangeri 76 Northern tree shrew 116 76
No Yes Sus scrofa 76_10.2 Pig 230 126
No Yes Bos taurus 76_3.1 Cattle 240 119
No Yes Ovis aries 76_3.1 Sheep 242 123
No Yes Vicugna pacos 76_1 Alpaca 100 55
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 197 107
No Yes Mustela putorius furo 76_1.0 Domestic ferret 256 126
No Yes Ailuropoda melanoleuca 76_1 Giant panda 260 133
No Yes Canis familiaris 76_3.1 Dog 344 164
No Yes Felis catus 76_6.2 Domestic cat 217 120
No Yes Equus caballus 76_2 Horse 346 154
No Yes Myotis lucifugus 76_2.0 Little brown bat 186 110
No Yes Pteropus vampyrus 76_1 Large flying fox 205 105
No Yes Sorex araneus 76_1 European shrew 99 59
No Yes Erinaceus europaeus 76 Western European hedgehog 123 72
No Yes Procavia capensis 76_1 Cape rock hyrax 162 94
No Yes Loxodonta africana 76_3 African savanna elephant 283 146
No Yes Echinops telfairi 76 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 222 131
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 76_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 208 123
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 237 126
No Yes Ornithorhynchus anatinus 76_5 Platypus 178 109
No Yes Saccoglossus kowalevskii v3.0   846 213
No Yes Petromyzon marinus 76_7.0 Sea lamprey 105 61
No Yes Meleagris gallopavo 76_2 Turkey 187 109
No Yes Gallus gallus 76_4 Chicken 209 112
No Yes Anas platyrhynchos 76_1.0 Mallard 173 87
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 187 102
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 217 115
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 207 119
No Yes Anolis carolinensis 76_2.0 Green anole 231 121
No Yes Xenopus laevis African clawed frog 285 201
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 269 158
No Yes Latimeria chalumnae 76_1 Coelacanth 310 166
No Yes Lepisosteus oculatus 76 Spotted gar 377 184
No Yes Gadus morhua 76_1 Atlantic cod 269 156
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 401 182
No Yes Takifugu rubripes 76_4 Torafugu 1082 620
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 316 186
No Yes Oryzias latipes 76_1 Japanese medaka 328 195
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 285 159
No Yes Poecilia formosa 76 Amazon molly 306 161
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 357 209
No Yes Astyanax mexicanus 76 Mexican tetra 284 174
No Yes Danio rerio 76_9 Zebrafish 479 256
No Yes Oikopleura dioica   254 92
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 820 276
No Yes Ciona intestinalis 76 Vase tunicate 203 93
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 785 270
No Yes Adineta vaga   119 73
No Yes Octopus bimaculoides 280   179 106
No Yes Crassostrea gigas 22 Pacific oyster 461 216
No Yes Lottia gigantea Owl limpet 168 101
No Yes Helobdella robusta   167 88
No Yes Capitella sp. I   333 186
No Yes Danaus plexippus OGS1.0 Monarch butterfly 72 33
No Yes Heliconius melpomene Postman butterfly 64 28
No Yes Bombyx mori Domestic silkworm 60 36
No Yes Nasonia vitripennis Jewel wasp 49 19
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 303 137
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 79 28
No Yes Linepithema humile v1.1 Argentine ant 47 28
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 49 26
No Yes Solenopsis invicta v.2.2.3 Red fire ant 31 25
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 82 31
No Yes Atta cephalotes v1.1   42 29
No Yes Camponotus floridanus v3.3 Florida carpenter ant 82 31
No Yes Lucilia cuprina Australian sheep blowfly 66 34
No Yes Drosophila grimshawi 1.3   64 35
No Yes Drosophila willistoni 1.3   55 35
No Yes Drosophila pseudoobscura 2.13   66 36
No Yes Drosophila persimilis 1.3   57 36
No Yes Drosophila suzukii   60 33
No Yes Drosophila yakuba 1.3   64 37
No Yes Drosophila simulans 1.3   45 31
No Yes Drosophila sechellia 1.3   60 34
No Yes Drosophila melanogaster 76_5 Fruit fly 288 126
No Yes Drosophila erecta 1.3   61 34
No Yes Drosophila ananassae 1.3   56 34
No Yes Drosophila virilis 1.2   62 35
No Yes Drosophila mojavensis 1.3   60 35
No Yes Megaselia scalaris 22   16 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 79 43
No Yes Culex pipiens quinquefasciatus Southern house mosquito 65 36
No Yes Anopheles darlingi 22 American malaria mosquito 49 27
No Yes Anopheles gambiae 49_3j African malaria mosquito 77 37
No Yes Tribolium castaneum 3.0 Red flour beetle 82 31
No Yes Pediculus humanus corporis (Early assembly) Human body louse 75 33
No Yes Acyrthosiphon pisum Pea aphid 45 19
No Yes Rhodnius prolixus 22   66 30
No Yes Daphnia pulex Common water flea 94 48
No Yes Strigamia maritima 22   81 42
No Yes Sarcoptes scabiei   44 28
No Yes Tetranychus urticae Two-spotted spider mite 52 32
No Yes Ixodes scapularis (Preliminary) Black-legged tick 58 32
No Yes Pristionchus pacificus   66 37
No Yes Meloidogyne incognita Southern root-knot nematode 29 17
No Yes Meloidogyne hapla   14 8
No Yes Onchocerca volvulus 22   48 24
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 72 44
No Yes Caenorhabditis japonica   44 29
No Yes Caenorhabditis brenneri   55 38
No Yes Caenorhabditis remanei   53 33
No Yes Caenorhabditis elegans 76_235 Roundworm 120 56
No Yes Caenorhabditis briggsae 2   41 27
No Yes Trichinella spiralis 22   48 32
No Yes Hymenolepis microstoma   55 28
No Yes Echinococcus multilocularis   37 17
No Yes Echinococcus granulosus   38 18
No Yes Taenia solium Pork tapeworm 34 19
No Yes Schistosoma mansoni   42 24
No Yes Mnemiopsis leidyi Sea walnut 232 121
No Yes Thelohanellus kitauei   3 3
No Yes Acropora digitifera v1.0   336 164
No Yes Nematostella vectensis 1.0 Starlet sea anemone 318 190
No Yes Hydra vulgaris   194 76
No Yes Amphimedon queenslandica   284 130
No Yes Trichoplax adhaerens   239 82
No Yes Proterospongia sp. ATCC 50818   182 81
No Yes Monosiga brevicollis   108 63
No Yes Sphaeroforma arctica JP610   21 18
No Yes Capsaspora owczarzaki ATCC 30864   177 137
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 4
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Rhizomucor miehei CAU432   2 2
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   3 1
No Yes Rhodotorula graminis WP1 v1.0   6 4
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   17 14
No Yes Sphaerobolus stellatus v1.0   3 1
No Yes Piloderma croceum F 1598 v1.0   3 1
No Yes Coniophora puteana   3 1
No Yes Hydnomerulius pinastri v2.0   3 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 2
No Yes Pisolithus microcarpus 441 v1.0   3 1
No Yes Pisolithus tinctorius Marx 270 v1.0   3 1
No Yes Scleroderma citrinum Foug A v1.0   3 1
No Yes Coprinopsis cinerea okayama7 130 v3   9 5
No Yes Pleurotus ostreatus Oyster mushroom 9 5
No Yes Amanita thiersii Skay4041 v1.0   6 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 5 2
No Yes Galerina marginata v1.0   7 2
No Yes Hebeloma cylindrosporum h7 v2.0   7 3
No Yes Laccaria bicolor S238N-H82   7 3
No Yes Agaricus bisporus var. bisporus   6 2
No Yes Schizophyllum commune   3 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   3 1
No Yes Heterobasidion annosum   3 1
No Yes Gloeophyllum trabeumv1.0   4 2
No Yes Punctularia strigosozonata v1.0   10 8
No Yes Sebacina vermifera MAFF 305830 v1.0   4 3
No Yes Fomitiporia mediterranea v1.0   3 1
No Yes Tulasnella calospora AL13/4D v1.0   11 9
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 1
No Yes Fomitopsis pinicolav1.0   3 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   3 1
No Yes Phanerochaete chrysosporium RP-78 2.1   6 2
No Yes Dichomitus squalens   3 1
No Yes Trametes versicolor v1.0   6 3
No Yes Tremella mesenterica Witches' butter 3 1
No Yes Apiospora montagnei NRRL 25634 v1.0   3 3
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Fusarium graminearum   2 1
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   4 3
No Yes Fusarium verticillioides 7600   5 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Aspergillus fumigatus Af293   3 1
No Yes Neosartorya fischeri NRRL 181   3 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Candida albicans SC5314   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Spizellomyces punctatus DAOM BR117   5 5
No Yes Dictyostelium discoideum   20 8
No Yes Dictyostelium purpureum   17 11
No Yes Entamoeba dispar 1.2   353 129
No Yes Entamoeba invadens 1.2   2670 727
No Yes Entamoeba histolytica 1   286 93
No Yes Selaginella moellendorffii   1 1
No Yes Pinus taeda Loblolly pine 1 1
No Yes Eucalyptus grandis v201 Rose gum 13 13
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Glycine max v109 Soybean 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 4 4
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 4 4
No Yes Populus trichocarpa v156 Black cottonwood 9 9
No Yes Vitis vinifera Wine grape 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 5 5
No Yes Aquilegia coerulea v195   10 10
No Yes Triticum urartu 22   20 20
No Yes Triticum aestivum 22 Bread wheat 53 53
No Yes Aegilops tauschii 22   25 25
No Yes Brachypodium distachyon Stiff brome 22 22
No Yes Oryza barthii 22 African wild rice 22 21
No Yes Oryza meridionalis 22   24 24
No Yes Oryza glumaepatula 22   41 41
No Yes Oryza glaberrima African rice 8 8
No Yes Oryza punctata 22   26 26
No Yes Oryza nivara 22   42 35
No Yes Oryza brachyantha 22 Malo sina 14 14
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 23 23
No Yes Oryza sativa v193 Rice 25 25
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 9 9
No Yes Panicum virgatum v202 Switchgrass 37 37
No Yes Setaria italica v164 Foxtail millet 22 22
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 9 9
No Yes Sorghum bicolor Sorghum 14 14
No Yes Musa balbisiana Balbis banana 6 5
No Yes Musa acuminata 22 Wild Malaysian banana 10 10
No Yes Coccomyxa subellipsoidea sp. C-169 v2   5 5
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   115 65
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   8 5
No Yes Volvox carteri v199   9 6
No Yes Chlamydomonas reinhardtii 4.0   22 13
No Yes Ostreococcus sp. RCC809   11 8
No Yes Ostreococcus lucimarinus CCE9901   11 8
No Yes Ostreococcus tauri   8 6
No Yes Bathycoccus prasinos   6 6
No Yes Micromonas sp. RCC299   23 16
No Yes Micromonas pusilla CCMP1545 v3.0   18 9
No Yes Cyanidioschyzon merolae strain 10D 22   5 1
No Yes Cyanidioschyzon merolae   5 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   92 85
No Yes Bigelowiella natans CCMP2755 22   42 16
No Yes Giardia lamblia 2.3   618 228
No Yes Cyanophora paradoxa   180 104
No Yes Leishmania mexicana 2.4   11 7
No Yes Leishmania major strain Friedlin   15 12
No Yes Leishmania infantum JPCM5 2.4   12 9
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   18 13
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   26 7
No Yes Aureococcus anophagefferens   86 52
No Yes Albugo laibachii 22   18 7
No Yes Pythium iwayamai DAOM BR242034 22   25 7
No Yes Pythium arrhenomanes ATCC 12531 22   12 8
No Yes Pythium ultimum v1.7-2   25 12
No Yes Pythium aphanidermatum DAOM BR444 22   10 8
No Yes Pythium irregulare DAOM BR486 22   12 9
No Yes Pythium vexans DAOM BR484 22   25 11
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 12 5
No Yes Phytophthora sojae 1.1   17 6
No Yes Phytophthora infestans T30-4   24 11
No Yes Phytophthora capsici   4 4
No Yes Hyaloperonospora arabidopsidis 22   5 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Thalassiosira pseudonana CCMP1335   2 1
No Yes Perkinsus marinus ATCC 50983   9 6
No Yes Paramecium tetraurelia   1622 428
No Yes Tetrahymena thermophila SB210 1   2980 799
No Yes Ichthyophthirius multifiliis strain G5   398 137
No Yes Cryptosporidium hominis   11 8
No Yes Cryptosporidium muris   17 9
No Yes Cryptosporidium parvum Iowa II   11 8
No Yes Neospora caninum   70 24
No Yes Toxoplasma gondii VEG   51 22
No Yes Toxoplasma gondii ME49   50 22
No Yes Toxoplasma gondii GT1   43 23
No Yes Babesia bovis T2Bo   16 8
No Yes Theileria parva   8 6
No Yes Theileria annulata   7 4
No Yes Plasmodium falciparum 3D7   6 4
No Yes Plasmodium vivax SaI-1 7.0   11 6
No Yes Plasmodium knowlesi strain H   7 4
No Yes Plasmodium yoelii ssp. yoelii 1   6 4
No Yes Plasmodium chabaudi   8 5
No Yes Plasmodium berghei ANKA   8 5
No Yes Symbiodinium minutum clade B1 v1.2   278 181
No Yes Naegleria gruberi   36 29
No Yes Trichomonas vaginalis   58 37
No Yes Guillardia theta CCMP2712 v1.0   409 172
No Yes Emiliania huxleyi CCMP1516   15 12
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Ilumatobacter coccineus   3 1
No Yes Filifactor alocis ATCC 35896   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Haliangium ochraceum DSM 14365   4 4
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   2 2
No Yes Myxococcus fulvus HW-1   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 318 205
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 152 94
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 80 45
No Yes Ascaris suum Victoria/Ghent Pig roundworm 66 36
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 66 43
No Yes Cryptococcus neoformans var. grubii H99   3 1
No Yes Cryptococcus neoformans B-3501A   2 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Candida albicans WO-1   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 19 19
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 26 26
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   70 24
No Yes Plasmodium falciparum HB3   4 3
No Yes Plasmodium falciparum Dd2   4 3
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 767 418
No Yes Homo sapiens (NCBI version) Human 381 199
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 224 124
No Yes Heliconius numata (Incomplete)   12 11
No Yes Loa loa v3.3 (Request) Eye worm 48 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 43 32
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 36 21
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 4 4
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 274 135
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 213 113
No Yes Gorilla gorilla 69_3.1 Western gorilla 216 118
No Yes Pongo abelii 69_2 Sumatran orangutan 208 108
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 209 109
No Yes Macaca mulatta 69_1 Rhesus monkey 223 109
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 215 121
No Yes Otolemur garnettii 69_3 Small-eared galago 232 124
No Yes Microcebus murinus 69_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 69_3.4 Norway rat 212 118
No Yes Mus musculus 69_38 House mouse 225 123
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 221 116
No Yes Cavia porcellus 69_3 Domestic guinea pig 191 100
No Yes Oryctolagus cuniculus 69_2 Rabbit 195 98
No Yes Ochotona princeps 69 American pika 169 92
No Yes Tupaia belangeri 69 Northern tree shrew 116 76
No Yes Sus scrofa 69_10.2 Pig 189 107
No Yes Bos taurus 69_3.1 Cattle 227 115
No Yes Vicugna pacos 69_1 Alpaca 100 55
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 195 105
No Yes Mustela putorius furo 69_1.0 Domestic ferret 245 124
No Yes Ailuropoda melanoleuca 69_1 Giant panda 228 118
No Yes Canis familiaris 69_3.1 Dog 228 118
No Yes Felis catus 69 Domestic cat 140 76
No Yes Equus caballus 69_2 Horse 211 114
No Yes Myotis lucifugus 69_2.0 Little brown bat 180 104
No Yes Pteropus vampyrus 69_1 Large flying fox 205 105
No Yes Sorex araneus 69_1 European shrew 99 59
No Yes Erinaceus europaeus 69 Western European hedgehog 123 72
No Yes Procavia capensis 69_1 Cape rock hyrax 161 93
No Yes Loxodonta africana 69_3 African savanna elephant 215 115
No Yes Echinops telfairi 69 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 110 69
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 69_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 168 103
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 225 120
No Yes Ornithorhynchus anatinus 69_5 Platypus 167 100
No Yes Petromyzon marinus 69_7.0 Sea lamprey 100 57
No Yes Meleagris gallopavo 69_2 Turkey 165 94
No Yes Gallus gallus 69_2 Chicken 183 91
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 185 100
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 174 99
No Yes Anolis carolinensis 69_2.0 Green anole 201 105
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 228 134
No Yes Latimeria chalumnae 69_1 Coelacanth 253 135
No Yes Gadus morhua 69_1 Atlantic cod 236 135
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 260 134
No Yes Takifugu rubripes 69_4 Torafugu 251 136
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 260 142
No Yes Oryzias latipes 69_1 Japanese medaka 252 143
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 283 157
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 273 156
No Yes Danio rerio 69_9 Zebrafish 330 175
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 243 76
No Yes Ciona intestinalis 69 Vase tunicate 180 83
No Yes Drosophila melanogaster 69_5 Fruit fly 65 35
No Yes Caenorhabditis elegans 69_215 Roundworm 44 30
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   6 5
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   3 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes NCBI 2017_08 genome   135415 65222
No Yes Protozoadb 2010_08 (Protozoadb)   2937 1215
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   4 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   13097 6054
No Yes Uniprot 2018_03 genome   103232 50551
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   383 304
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   7 6
No Yes PDB chains (SCOP 1.75) (PDB)   28 21
No Yes Protein Data Bank (all PDB sequenc)   316 238
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   330 330
No Yes TargetDB (Targets)   328 153
No Yes UniProt viral sequences (Viral)   14 13

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.