SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


EGF/Laminin superfamily domain assignments
in
Tribolium castaneum 3.0

Assignment details

(show help)


Tribolium castaneum 3.0 has 229 significant domains in 58 proteins.

     

Sequence ID   Evalue   Region   Family  
TC000086   0.000000000179   131-179   EGF-type module  
  0.000000000343   1372-1420   EGF-type module  
  0.00000000223   553-591   EGF-type module  
  0.000000481   1100-1147   EGF-type module  
  0.0000559   1065-1107   EGF-type module  
  0.00698   516-551   EGF-type module  
  0.0495   174-200   EGF-type module  
TC000214   0.0000000000318   916-959   EGF-type module  
  0.00000000299   994-1040   EGF-type module  
  0.000000038   836-877   EGF-type module  
  0.000000046   878-920   EGF-type module  
  0.000000183   1282-1321   EGF-type module  
  0.000000267   962-999   EGF-type module  
TC000401   0.0000000182   4164-4202   EGF-type module  
  0.0000000288   4054-4091   EGF-type module  
  0.0000014   4086-4127   EGF-type module  
  0.0000568   3808-3851   EGF-type module  
  0.000335   4130-4168   EGF-type module  
TC000560   0.000000000733   310-359   EGF-type module  
TC000836   0.0000000000098   1620-1673   EGF-type module  
  0.0000000000246   2400-2450   EGF-type module  
  0.000000000447   2140-2189   EGF-type module  
  0.00000000532   1501-1547   EGF-type module  
  0.00000000545   1413-1456   EGF-type module  
  0.00000000898   1904-1963   EGF-type module  
  0.00000000921   2288-2343   EGF-type module  
  0.0000000419   283-329   EGF-type module  
  0.000000101   1464-1515   EGF-type module  
  0.000000231   2178-2214   EGF-type module  
  0.0000186   2263-2300   EGF-type module  
  0.00101   151-184   EGF-type module  
  0.00698   119-150   EGF-type module  
  0.0257   1662-1694   EGF-type module  
TC000871   0.0000000000219   2421-2459   EGF-type module  
  0.000000000128   2111-2148   EGF-type module  
  0.00000000653   2075-2116   EGF-type module  
  0.0000000322   2458-2496   EGF-type module  
  0.0000000617   1034-1071   EGF-type module  
  0.000000167   2227-2269   EGF-type module  
  0.000000894   2190-2234   EGF-type module  
  0.000000956   836-875   EGF-type module  
  0.00000382   2149-2193   EGF-type module  
  0.00000389   2499-2533   EGF-type module  
  0.000231   3443-3482   EGF-type module  
TC000930   0.0000963   74-98   Follistatin (FS) module N-terminal domain, FS-N  
TC001967   0.00000000023   385-426   EGF-type module  
  0.0000000205   328-366   EGF-type module  
TC001979   0.00000869   282-322   EGF-type module  
  0.000202   253-282   EGF-type module  
  0.000497   182-217   EGF-type module  
  0.000559   316-351   EGF-type module  
  0.00118   219-248   EGF-type module  
TC001981   0.000000000109   318-361   EGF-type module  
  0.000000332   347-389   EGF-type module  
  0.00000447   665-709   EGF-type module  
TC002285   0.00000000109   347-395   Laminin-type module  
  0.00000000115   464-519   Laminin-type module  
  0.000000301   527-567   Laminin-type module  
TC002911   0.00000325   348-387   EGF-type module  
  0.0000436   314-345   EGF-type module  
  0.000537   282-312   EGF-type module  
TC003136   0.000000351   837-882   EGF-type module  
  0.00000225   763-800   EGF-type module  
  0.00000696   801-836   EGF-type module  
TC003429   0.0000000191   133-186   EGF-type module  
TC003460   0.00000000067   540-588   Laminin-type module  
  0.000000000949   1902-1955   Laminin-type module  
  0.00000000145   1362-1410   Laminin-type module  
  0.00000000502   1453-1502   Laminin-type module  
  0.00000000837   494-542   Laminin-type module  
  0.0000000145   1852-1904   EGF-type module  
  0.000000019   1794-1837   Laminin-type module  
  0.0000000949   274-335   Laminin-type module  
  0.000000335   1414-1450   Laminin-type module  
  0.000000363   731-781   Laminin-type module  
  0.000000893   1500-1548   Laminin-type module  
  0.00000114   448-496   Laminin-type module  
  0.00000209   784-823   Laminin-type module  
  0.00000363   631-678   Laminin-type module  
  0.00000502   333-389   Laminin-type module  
  0.0000067   586-633   Laminin-type module  
  0.0000103   1955-1989   Laminin-type module  
  0.0000232   403-450   Laminin-type module  
  0.000053   1759-1796   Laminin-type module  
  0.0000921   695-733   Laminin-type module  
  0.00419   2047-2095   Laminin-type module  
TC003939   0.00000115   62-100   EGF-type module  
TC004042   0.0000000184   263-309   EGF-type module  
  0.0000838   234-277   EGF-type module  
TC004114   0.0000000697   285-320   EGF-type module  
  0.0389   250-287   Integrin beta EGF-like domains  
TC004260   0.00000000194   949-987   EGF-type module  
  0.0000000167   973-1021   EGF-type module  
  0.0000773   156-210   EGF-type module  
  0.00126   470-530   EGF-type module  
  0.00377   1291-1345   EGF-type module  
TC004393   0.000000000000637   645-688   EGF-type module  
  0.0000000000578   1033-1076   EGF-type module  
  0.000000000464   683-725   EGF-type module  
  0.0000000152   1191-1229   EGF-type module  
  0.000000599   1232-1268   EGF-type module  
  0.000000953   1269-1307   EGF-type module  
  0.00000625   1007-1039   EGF-type module  
TC004414   0.0000837   1979-2023   EGF-type module  
  0.00182   923-967   EGF-type module  
TC004424   0.0000000000464   1845-1884   EGF-type module  
  0.000000000516   809-850   EGF-type module  
  0.000000000803   770-813   EGF-type module  
  0.00000000112   334-378   EGF-type module  
  0.00000000243   1808-1850   EGF-type module  
  0.00000000373   616-663   EGF-type module  
  0.0000000137   537-581   EGF-type module  
  0.0000000177   181-219   EGF-type module  
  0.000000025   379-415   EGF-type module  
  0.0000000279   459-498   EGF-type module  
  0.0000000335   301-345   EGF-type module  
  0.0000000336   1472-1506   EGF-type module  
  0.0000000644   907-951   EGF-type module  
  0.000000301   1965-2015   EGF-type module  
  0.000000431   223-262   EGF-type module  
  0.000000857   573-615   EGF-type module  
  0.00000101   266-305   EGF-type module  
  0.00000237   501-535   EGF-type module  
  0.00000331   1927-1965   EGF-type module  
  0.0000304   1774-1813   EGF-type module  
  0.0000744   1888-1929   EGF-type module  
  0.000286   946-984   EGF-type module  
  0.000807   2049-2089   EGF-type module  
  0.00133   890-914   EGF-type module  
  0.00215   2007-2038   EGF-type module  
  0.00399   847-868   EGF-type module  
  0.0782   421-452   EGF-type module  
TC004465   0.00000000000154   514-562   EGF-type module  
  0.0000875   473-508   EGF-type module  
TC004709   0.0000000586   695-737   Laminin-type module  
  0.000279   748-784   Laminin-type module  
TC005184   0.000000000201   809-857   Laminin-type module  
  0.000000000711   855-907   Laminin-type module  
  0.000000012   1016-1064   Laminin-type module  
  0.0000000162   351-395   Laminin-type module  
  0.0000000173   761-802   Laminin-type module  
  0.0000000858   271-323   Laminin-type module  
  0.0000000921   504-544   Laminin-type module  
  0.000000114   1067-1109   Laminin-type module  
  0.00000017   964-1007   Laminin-type module  
  0.000000527   915-966   Laminin-type module  
  0.000000642   453-496   Laminin-type module  
  0.00000246   393-450   Laminin-type module  
  0.0000363   1115-1162   Laminin-type module  
TC005670   0.00000581   151-184   EGF-type module  
TC006727   0.0000055   4660-4701   EGF-type module  
TC007013   0.0000000000911   598-640   EGF-type module  
  0.00000225   635-676   EGF-type module  
  0.000101   766-826   EGF-type module  
  0.000255   724-781   EGF-type module  
TC007146   0.000000272   1214-1253   EGF-type module  
  0.00000758   1516-1557   EGF-type module  
  0.0132   1817-1853   EGF-type module  
TC007149   0.000000279   426-472   EGF-type module  
  0.000000708   389-435   EGF-type module  
  0.00000603   589-627   EGF-type module  
TC007264   0.00000984   677-710   EGF-type module  
TC007649   0.0000234   55-92   EGF-type module  
TC007878   0.0000000341   2226-2263   EGF-type module  
  0.00000145   2186-2224   EGF-type module  
  0.00151   2126-2185   EGF-type module  
  0.0391   2499-2536   EGF-type module  
TC008029   0.00000000154   1102-1143   EGF-type module  
  0.00000000706   1256-1295   EGF-type module  
  0.000000088   1170-1213   EGF-type module  
  0.000000235   1213-1260   EGF-type module  
  0.000000909   1145-1176   EGF-type module  
  0.000503   1061-1100   EGF-type module  
TC008151   0.0000000945   606-652   EGF-type module  
  0.0000909   300-339   EGF-type module  
  0.00163   904-956   EGF-type module  
TC008595   0.00000428   134-175   EGF-type module  
TC008596   0.0000000000439   665-709   EGF-type module  
  0.00000203   212-265   EGF-type module  
  0.0000364   582-615   EGF-type module  
  0.000343   974-1008   EGF-type module  
TC009120   0.0000213   95-128   Laminin-type module  
TC009548   0.000000251   1526-1568   EGF-type module  
  0.00000132   199-235   EGF-type module  
  0.0000265   4424-4457   EGF-type module  
  0.0000571   1177-1218   EGF-type module  
  0.000109   2134-2181   EGF-type module  
  0.000133   1825-1864   EGF-type module  
  0.00016   4203-4236   EGF-type module  
  0.000191   4385-4420   EGF-type module  
  0.00027   4157-4203   EGF-type module  
  0.000289   1211-1248   EGF-type module  
  0.000644   4236-4268   EGF-type module  
  0.000658   4299-4335   EGF-type module  
  0.00164   818-862   EGF-type module  
  0.00205   4122-4155   EGF-type module  
  0.00503   2450-2490   EGF-type module  
  0.0163   170-209   EGF-type module  
  0.0218   4344-4380   EGF-type module  
TC009677   0.00000123   394-428   EGF-type module  
TC010113   0.0000000000614   750-792   EGF-type module  
  0.0000000000755   597-639   EGF-type module  
  0.00000000373   632-672   EGF-type module  
  0.0000000046   714-754   EGF-type module  
  0.0000000477   788-824   EGF-type module  
  0.000000131   676-711   EGF-type module  
  0.00000733   265-307   EGF-type module  
  0.00014   564-601   EGF-type module  
TC010461   0.00000000000121   103-145   EGF-type module  
  0.0000000000703   183-220   EGF-type module  
  0.00000000201   65-107   EGF-type module  
  0.000000147   978-1019   EGF-type module  
  0.000000155   711-745   EGF-type module  
  0.000000319   222-264   EGF-type module  
  0.00000035   142-188   EGF-type module  
  0.0000017   30-71   EGF-type module  
  0.00000573   265-299   EGF-type module  
  0.0000795   1240-1276   EGF-type module  
TC010540   0.00000000053   744-795   Laminin-type module  
  0.000000001   847-893   Laminin-type module  
  0.00000000391   278-330   Laminin-type module  
  0.0000000167   955-996   Laminin-type module  
  0.0000000206   460-515   Laminin-type module  
  0.0000000279   902-952   Laminin-type module  
  0.0000206   413-453   Laminin-type module  
  0.000156   358-415   Laminin-type module  
  0.000271   1003-1049   Laminin-type module  
  0.000301   800-849   Laminin-type module  
  0.000753   707-746   EGF-type module  
TC011197   0.0000000000131   795-840   EGF-type module  
  0.0000000000263   630-675   EGF-type module  
TC011707   0.000000000977   591-631   Integrin beta EGF-like domains  
  0.00226   647-680   Integrin beta EGF-like domains  
  0.00921   551-580   Integrin beta EGF-like domains  
TC011986   0.000000069   174-219   EGF-type module  
  0.000000393   578-625   EGF-type module  
  0.000000475   821-867   EGF-type module  
  0.000000585   257-292   EGF-type module  
  0.00000126   1139-1181   EGF-type module  
  0.00000193   1428-1464   EGF-type module  
  0.00000205   2218-2254   EGF-type module  
  0.0000033   502-537   EGF-type module  
  0.00000363   1014-1063   EGF-type module  
  0.0000283   2388-2423   EGF-type module  
  0.0000381   2747-2795   EGF-type module  
  0.00157   10543-10577   EGF-type module  
  0.00216   12309-12343   EGF-type module  
  0.00347   15803-15836   EGF-type module  
  0.00356   17347-17380   EGF-type module  
  0.00381   12627-12661   EGF-type module  
  0.00381   17982-18015   EGF-type module  
  0.00508   14215-14247   EGF-type module  
  0.00508   17033-17066   EGF-type module  
  0.00559   12944-12977   EGF-type module  
  0.00621   15168-15202   EGF-type module  
  0.00635   14533-14567   EGF-type module  
  0.00661   11674-11707   EGF-type module  
  0.00755   15486-15518   EGF-type module  
  0.00813   206-250   EGF-type module  
  0.00839   17668-17701   EGF-type module  
  0.00991   13262-13295   EGF-type module  
  0.0127   8136-8168   EGF-type module  
  0.0134   18585-18617   EGF-type module  
  0.0136   13787-13822   EGF-type module  
  0.015   14851-14883   EGF-type module  
  0.0195   11390-11424   EGF-type module  
  0.0205   11993-12027   EGF-type module  
  0.0212   18908-18940   EGF-type module  
  0.0233   11886-11919   EGF-type module  
  0.0241   13684-13718   EGF-type module  
  0.0242   9791-9823   EGF-like domain of nidogen-1  
  0.0251   16438-16473   EGF-type module  
  0.0262   8348-8380   EGF-type module  
  0.028   9022-9055   EGF-type module  
  0.028   16925-16958   EGF-type module  
  0.0315   18414-18446   EGF-type module  
  0.0363   13157-13190   EGF-type module  
  0.0376   17559-17592   EGF-type module  
  0.0381   1568-1600   EGF-type module  
  0.0405   8450-8484   EGF-type module  
  0.0457   3511-3544   EGF-type module  
  0.0502   10862-10895   EGF-type module  
  0.0508   3599-3632   EGF-type module  
  0.0583   18803-18835   EGF-type module  
  0.0585   7316-7352   EGF-type module  
  0.0587   791-836   EGF-type module  
  0.0636   18195-18228   EGF-type module  
  0.0677   15062-15094   EGF-type module  
  0.0839   7178-7212   EGF-type module  
  0.0867   11284-11316   EGF-type module  
  0.0893   7599-7632   EGF-type module  
  0.0939   9342-9376   EGF-type module  
TC012521   0.00000000138   1421-1461   EGF-type module  
  0.00000578   2045-2085   Laminin-type module  
  0.0805   1918-1949   EGF-type module  
TC012551   0.000024   219-262   EGF-type module  
  0.0000307   123-169   EGF-type module  
TC012834   0.0000000023   879-926   Laminin-type module  
TC013227   0.00000000025   835-874   EGF-type module  
  0.000000058   796-852   EGF-type module  
  0.0346   252-275   EGF-type module  
TC013635   0.0000000000419   825-865   EGF-type module  
  0.00000000154   219-264   EGF-type module  
  0.000000073   638-691   EGF-type module  
  0.000000749   172-205   EGF-type module  
  0.0000165   852-897   EGF-type module  
  0.00262   597-642   EGF-type module  
  0.00329   413-441   EGF-type module  
TC013706   0.0000419   579-622   Integrin beta EGF-like domains  
  0.000145   535-574   Integrin beta EGF-like domains  
  0.022   500-535   Integrin beta EGF-like domains  
  0.0237   458-484   Integrin beta EGF-like domains  
TC014604   0.00000000123   228-278   EGF-type module  
TC014696   0.000000000895   1002-1058   EGF-type module  
  0.0285   148-172   Integrin beta EGF-like domains  
TC014697   0.000000112   380-428   Laminin-type module  
  0.000000172   260-295   EGF-type module  
  0.0000218   333-380   Laminin-type module  
  0.00576   597-623   EGF-type module  
  0.00614   297-330   EGF-type module  
TC014698   0.000000628   661-710   Laminin-type module  
  0.00419   753-790   Laminin-type module  
TC014773   0.000000000193   751-802   Laminin-type module  
  0.0000000419   1132-1173   Laminin-type module  
  0.000000259   809-866   Laminin-type module  
  0.000000335   1179-1220   Laminin-type module  
  0.000000446   864-904   Laminin-type module  
  0.00000046   303-362   Laminin-type module  
  0.0000017   360-415   Laminin-type module  
  0.00000176   956-997   Laminin-type module  
  0.00000307   1577-1617   Laminin-type module  
  0.00000614   1275-1322   Laminin-type module  
  0.00000725   909-950   Laminin-type module  
  0.00000809   430-480   Laminin-type module  
  0.0000223   1630-1679   Laminin-type module  
  0.000195   1677-1718   Laminin-type module  
  0.000201   493-529   Laminin-type module  
  0.00053   712-753   EGF-type module  
  0.00067   1227-1266   Laminin-type module  
TC030735   0.000000117   1770-1814   Laminin-type module  
  0.000000335   3644-3686   EGF-type module  
  0.00000186   3355-3397   EGF-type module  
  0.0000126   1433-1481   Laminin-type module  
  0.000468   1734-1772   EGF-type module  
  0.00201   2077-2118   Laminin-type module  
  0.0053   1822-1868   Laminin-type module  
  0.018   1369-1398   EGF-type module  
  0.0753   1479-1527   Laminin-type module  
 
Weak hits:
TC000689   0.00167   228-273   Laminin-type module  
  0.0201   532-579   Laminin-type module  
  0.0737   278-316   Laminin-type module  
TC001019   0.0251   95-115   EGF-type module  
TC002114   0.0046   686-728   EGF-type module  
TC002893   0.0393   405-431   EGF-type module  
TC004764   0.0623   375-401   EGF-type module  
TC005782   0.00614   476-502   Integrin beta EGF-like domains  
  0.00753   545-580   Integrin beta EGF-like domains  
  0.0307   509-538   Integrin beta EGF-like domains  
TC007390   0.00246   76-99   EGF-type module  
TC007843   0.00419   460-484   Integrin beta EGF-like domains  
TC007844   0.000112   75-101   Integrin beta EGF-like domains  
  0.000233   45-69   EGF-type module  
  0.000679   145-169   Integrin beta EGF-like domains  
  0.00205   176-201   EGF-type module  
  0.00875   9-36   Integrin beta EGF-like domains  
  0.013   204-239   Integrin beta EGF-like domains  
TC008043   0.0829   966-1003   EGF-type module  
TC008116   0.000251   855-879   EGF-type module  
  0.00283   955-980   Integrin beta EGF-like domains  
  0.00304   824-847   EGF-type module  
  0.0089   924-949   Integrin beta EGF-like domains  
  0.00963   788-814   EGF-type module  
  0.0115   759-783   EGF-type module  
  0.0272   982-1017   Integrin beta EGF-like domains  
TC008608   0.000156   464-497   EGF-type module  
  0.00226   409-446   EGF-type module  
TC009208   0.00072   19-42   EGF-type module  
TC010001   0.000829   161-187   Integrin beta EGF-like domains  
  0.0251   189-230   EGF-type module  
TC010031   0.0931   161-182   EGF-type module  
TC010727   0.0586   138-166   EGF-type module  
TC011508   0.0226   707-748   EGF-type module  
  0.0303   1369-1404   EGF-type module  
TC012610   0.0795   488-515   Integrin beta EGF-like domains  
TC012863   0.023   14-33   EGF-type module  
TC013537   0.00512   28-66   Merozoite surface protein 1 (MSP-1)  
TC013894   0.000837   518-560   EGF-type module  
TC014865   0.000178   265-302   EGF-type module  
  0.00377   107-137   EGF-type module  
  0.00739   4-36   EGF-type module  
TC030664   0.0086   348-371   EGF-type module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a EGF/Laminin domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   719145 719145
No Yes Homo sapiens 76_38 Human 1736 621
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 532 163
No Yes Gorilla gorilla 76_3.1 Western gorilla 876 233
No Yes Pongo abelii 76_2 Sumatran orangutan 539 174
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 555 171
No Yes Papio anubis 76 Olive baboon 634 191
No Yes Macaca mulatta 76_1 Rhesus monkey 925 318
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1183 386
No Yes Otolemur garnettii 76_3 Small-eared galago 551 171
No Yes Microcebus murinus 76_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 76_5.0 Norway rat 613 207
No Yes Mus musculus 76_38 House mouse 1015 344
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 515 145
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 529 164
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 521 161
No Yes Cavia porcellus 76_3 Domestic guinea pig 580 173
No Yes Oryctolagus cuniculus 76_2 Rabbit 478 160
No Yes Ochotona princeps 76 American pika 469 142
No Yes Tupaia belangeri 76 Northern tree shrew 407 132
No Yes Sus scrofa 76_10.2 Pig 585 211
No Yes Bos taurus 76_3.1 Cattle 632 189
No Yes Ovis aries 76_3.1 Sheep 602 193
No Yes Vicugna pacos 76_1 Alpaca 260 102
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 76_1.0 Domestic ferret 583 186
No Yes Ailuropoda melanoleuca 76_1 Giant panda 634 192
No Yes Canis familiaris 76_3.1 Dog 761 226
No Yes Felis catus 76_6.2 Domestic cat 592 185
No Yes Equus caballus 76_2 Horse 806 230
No Yes Myotis lucifugus 76_2.0 Little brown bat 502 169
No Yes Pteropus vampyrus 76_1 Large flying fox 529 164
No Yes Sorex araneus 76_1 European shrew 286 102
No Yes Erinaceus europaeus 76 Western European hedgehog 383 118
No Yes Procavia capensis 76_1 Cape rock hyrax 460 149
No Yes Loxodonta africana 76_3 African savanna elephant 690 216
No Yes Echinops telfairi 76 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 616 199
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 271 99
No Yes Macropus eugenii 76_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 621 199
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 616 176
No Yes Ornithorhynchus anatinus 76_5 Platypus 511 184
No Yes Saccoglossus kowalevskii v3.0   3261 466
No Yes Petromyzon marinus 76_7.0 Sea lamprey 221 94
No Yes Meleagris gallopavo 76_2 Turkey 509 175
No Yes Gallus gallus 76_4 Chicken 523 155
No Yes Anas platyrhynchos 76_1.0 Mallard 519 172
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 513 170
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 533 157
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 592 196
No Yes Anolis carolinensis 76_2.0 Green anole 539 160
No Yes Xenopus laevis African clawed frog 514 207
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 694 186
No Yes Latimeria chalumnae 76_1 Coelacanth 738 218
No Yes Lepisosteus oculatus 76 Spotted gar 888 241
No Yes Gadus morhua 76_1 Atlantic cod 618 198
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 299
No Yes Takifugu rubripes 76_4 Torafugu 2323 723
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 771 242
No Yes Oryzias latipes 76_1 Japanese medaka 740 228
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 627 196
No Yes Poecilia formosa 76 Amazon molly 687 203
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1051 282
No Yes Astyanax mexicanus 76 Mexican tetra 752 239
No Yes Danio rerio 76_9 Zebrafish 1139 389
No Yes Oikopleura dioica   459 149
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1671 332
No Yes Ciona intestinalis 76 Vase tunicate 438 155
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2661 612
No Yes Adineta vaga   1146 278
No Yes Octopus bimaculoides 280   748 217
No Yes Crassostrea gigas 22 Pacific oyster 874 287
No Yes Lottia gigantea Owl limpet 627 164
No Yes Helobdella robusta   407 130
No Yes Capitella sp. I   916 309
No Yes Danaus plexippus OGS1.0 Monarch butterfly 197 52
No Yes Heliconius melpomene Postman butterfly 184 46
No Yes Bombyx mori Domestic silkworm 149 65
No Yes Nasonia vitripennis Jewel wasp 168 39
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 745 159
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 213 49
No Yes Linepithema humile v1.1 Argentine ant 160 66
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 182 59
No Yes Solenopsis invicta v.2.2.3 Red fire ant 111 54
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 46
No Yes Atta cephalotes v1.1   189 65
No Yes Camponotus floridanus v3.3 Florida carpenter ant 206 46
No Yes Lucilia cuprina Australian sheep blowfly 189 47
No Yes Drosophila grimshawi 1.3   235 55
No Yes Drosophila willistoni 1.3   203 47
No Yes Drosophila pseudoobscura 2.13   219 52
No Yes Drosophila persimilis 1.3   189 52
No Yes Drosophila suzukii   233 53
No Yes Drosophila yakuba 1.3   214 47
No Yes Drosophila simulans 1.3   145 43
No Yes Drosophila sechellia 1.3   187 41
No Yes Drosophila melanogaster 76_5 Fruit fly 696 152
No Yes Drosophila erecta 1.3   215 44
No Yes Drosophila ananassae 1.3   210 48
No Yes Drosophila virilis 1.2   216 49
No Yes Drosophila mojavensis 1.3   212 46
No Yes Megaselia scalaris 22   77 32
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 222 54
No Yes Culex pipiens quinquefasciatus Southern house mosquito 204 55
No Yes Anopheles darlingi 22 American malaria mosquito 125 29
No Yes Anopheles gambiae 49_3j African malaria mosquito 196 51
No Yes Tribolium castaneum 3.0 Red flour beetle 229 58
No Yes Pediculus humanus corporis (Early assembly) Human body louse 220 55
No Yes Acyrthosiphon pisum Pea aphid 185 35
No Yes Rhodnius prolixus 22   183 44
No Yes Daphnia pulex Common water flea 256 74
No Yes Strigamia maritima 22   230 60
No Yes Sarcoptes scabiei   166 48
No Yes Tetranychus urticae Two-spotted spider mite 224 64
No Yes Ixodes scapularis (Preliminary) Black-legged tick 156 55
No Yes Pristionchus pacificus   229 96
No Yes Meloidogyne incognita Southern root-knot nematode 119 42
No Yes Meloidogyne hapla   76 37
No Yes Onchocerca volvulus 22   185 53
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 433 107
No Yes Caenorhabditis japonica   193 64
No Yes Caenorhabditis brenneri   302 105
No Yes Caenorhabditis remanei   276 100
No Yes Caenorhabditis elegans 76_235 Roundworm 528 152
No Yes Caenorhabditis briggsae 2   242 82
No Yes Trichinella spiralis 22   313 92
No Yes Hymenolepis microstoma   122 36
No Yes Echinococcus multilocularis   133 38
No Yes Echinococcus granulosus   126 38
No Yes Taenia solium Pork tapeworm 127 41
No Yes Schistosoma mansoni   123 45
No Yes Mnemiopsis leidyi Sea walnut 178 50
No Yes Thelohanellus kitauei   26 25
No Yes Acropora digitifera v1.0   831 347
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1039 372
No Yes Hydra vulgaris   350 115
No Yes Amphimedon queenslandica   433 151
No Yes Trichoplax adhaerens   574 125
No Yes Proterospongia sp. ATCC 50818   129 59
No Yes Monosiga brevicollis   53 30
No Yes Sphaeroforma arctica JP610   120 34
No Yes Capsaspora owczarzaki ATCC 30864   28 22
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   19 9
No Yes Dictyostelium purpureum   9 6
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 17 17
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   17 17
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 10 10
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 18 18
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 12 12
No Yes Cucumis sativus v122 Cucumber 6 5
No Yes Fragaria vesca Wild strawberry 15 13
No Yes Malus domestica v196 Apple 25 25
No Yes Prunus persica v139 Peach 11 11
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Populus trichocarpa v156 Black cottonwood 10 10
No Yes Vitis vinifera Wine grape 19 12
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 20 20
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   14 14
No Yes Triticum urartu 22   42 42
No Yes Triticum aestivum 22 Bread wheat 122 122
No Yes Aegilops tauschii 22   64 64
No Yes Brachypodium distachyon Stiff brome 26 25
No Yes Oryza barthii 22 African wild rice 59 49
No Yes Oryza meridionalis 22   53 44
No Yes Oryza glumaepatula 22   66 64
No Yes Oryza glaberrima African rice 31 31
No Yes Oryza punctata 22   44 41
No Yes Oryza nivara 22   56 52
No Yes Oryza brachyantha 22 Malo sina 38 38
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 50 49
No Yes Oryza sativa v193 Rice 51 50
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 16 16
No Yes Panicum virgatum v202 Switchgrass 77 76
No Yes Setaria italica v164 Foxtail millet 40 40
No Yes Zea mays subsp. mays Maize 18 17
No Yes Zea mays v181 Maize 20 19
No Yes Sorghum bicolor Sorghum 26 26
No Yes Musa balbisiana Balbis banana 14 13
No Yes Musa acuminata 22 Wild Malaysian banana 29 26
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   7 6
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   3 2
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   18 12
No Yes Giardia lamblia 2.3   26 14
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   10 9
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   7 6
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   6 4
No Yes Fragilariopsis cylindrus   14 10
No Yes Thalassiosira pseudonana CCMP1335   6 4
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   10 10
No Yes Tetrahymena thermophila SB210 1   4 4
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   7 6
No Yes Cryptosporidium muris   13 7
No Yes Cryptosporidium parvum Iowa II   12 7
No Yes Neospora caninum   12 7
No Yes Toxoplasma gondii VEG   12 6
No Yes Toxoplasma gondii ME49   14 8
No Yes Toxoplasma gondii GT1   8 5
No Yes Babesia bovis T2Bo   4 2
No Yes Theileria parva   1 1
No Yes Plasmodium falciparum 3D7   10 7
No Yes Plasmodium vivax SaI-1 7.0   12 8
No Yes Plasmodium knowlesi strain H   13 9
No Yes Plasmodium yoelii ssp. yoelii 1   8 5
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 6
No Yes Symbiodinium minutum clade B1 v1.2   10 7
No Yes Naegleria gruberi   15 13
No Yes Guillardia theta CCMP2712 v1.0   24 18
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 774 252
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 393 99
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 218 56
No Yes Ascaris suum Victoria/Ghent Pig roundworm 227 76
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 360 114
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 56 56
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42
No Yes Neospora caninum Nc-Liverpool 6.2   12 7
No Yes Plasmodium falciparum HB3   9 6
No Yes Plasmodium falciparum Dd2   6 4
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 1814 677
No Yes Homo sapiens (NCBI version) Human 877 288
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 556 169
No Yes Heliconius numata (Incomplete)   14 9
No Yes Loa loa v3.3 (Request) Eye worm 185 61
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 186 80
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 169 51
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 25 25
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 710 195
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 517 157
No Yes Gorilla gorilla 69_3.1 Western gorilla 571 161
No Yes Pongo abelii 69_2 Sumatran orangutan 519 168
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 495 156
No Yes Macaca mulatta 69_1 Rhesus monkey 556 172
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 578 165
No Yes Otolemur garnettii 69_3 Small-eared galago 549 170
No Yes Microcebus murinus 69_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 69_3.4 Norway rat 574 173
No Yes Mus musculus 69_38 House mouse 554 169
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 513 143
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 502 156
No Yes Cavia porcellus 69_3 Domestic guinea pig 558 163
No Yes Oryctolagus cuniculus 69_2 Rabbit 463 150
No Yes Ochotona princeps 69 American pika 469 142
No Yes Tupaia belangeri 69 Northern tree shrew 407 132
No Yes Sus scrofa 69_10.2 Pig 467 164
No Yes Bos taurus 69_3.1 Cattle 558 165
No Yes Vicugna pacos 69_1 Alpaca 260 102
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 69_1.0 Domestic ferret 565 183
No Yes Ailuropoda melanoleuca 69_1 Giant panda 551 166
No Yes Canis familiaris 69_3.1 Dog 552 165
No Yes Felis catus 69 Domestic cat 380 133
No Yes Equus caballus 69_2 Horse 546 178
No Yes Myotis lucifugus 69_2.0 Little brown bat 472 160
No Yes Pteropus vampyrus 69_1 Large flying fox 525 162
No Yes Sorex araneus 69_1 European shrew 286 102
No Yes Erinaceus europaeus 69 Western European hedgehog 383 118
No Yes Procavia capensis 69_1 Cape rock hyrax 458 148
No Yes Loxodonta africana 69_3 African savanna elephant 526 165
No Yes Echinops telfairi 69 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 322 125
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 267 97
No Yes Macropus eugenii 69_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 491 158
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 567 166
No Yes Ornithorhynchus anatinus 69_5 Platypus 452 168
No Yes Petromyzon marinus 69_7.0 Sea lamprey 203 84
No Yes Meleagris gallopavo 69_2 Turkey 471 152
No Yes Gallus gallus 69_2 Chicken 516 150
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 494 162
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 497 161
No Yes Anolis carolinensis 69_2.0 Green anole 510 157
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 553 156
No Yes Latimeria chalumnae 69_1 Coelacanth 639 183
No Yes Gadus morhua 69_1 Atlantic cod 547 170
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 693 221
No Yes Takifugu rubripes 69_4 Torafugu 677 202
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 659 191
No Yes Oryzias latipes 69_1 Japanese medaka 656 187
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 627 196
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 749 202
No Yes Danio rerio 69_9 Zebrafish 769 240
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 523 112
No Yes Ciona intestinalis 69 Vase tunicate 408 143
No Yes Drosophila melanogaster 69_5 Fruit fly 218 50
No Yes Caenorhabditis elegans 69_215 Roundworm 241 74
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_050719N (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   302166 90591
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   242 149
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   13 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 3
No Yes STRING v9.0.5 (STRING)   25827 7909
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 1
No Yes Uniprot 2018_03 genome   214533 69342
No Yes Global Ocean Sampling Expedition (GOS)   425 226
No Yes NCBI viral sequences (Viral)   27 26
No Yes PDB chains (SCOP 1.75) (PDB)   117 88
No Yes Protein Data Bank (all PDB sequenc)   1179 857
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2437 2434
No Yes TargetDB (Targets)   486 191
No Yes UniProt viral sequences (Viral)   82 69

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]