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  Home > Genomes > Proterospongia sp. ATCC 50818 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Proterospongia sp. ATCC 50818

Assignment details

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Proterospongia sp. ATCC 50818 has 102 significant domains in 32 proteins.

     

Sequence ID   Evalue   Region   Family  
PTSG_00705T0   0.0000000000278   739-797   Complement control module/SCR domain  
PTSG_00739T0   0.000000000153   743-801   Complement control module/SCR domain  
PTSG_00950T0   0.00000137   6-71   Complement control module/SCR domain  
PTSG_01519T0   0.000000000528   371-434   Complement control module/SCR domain  
  0.00000000375   313-377   Complement control module/SCR domain  
  0.000108   428-503   Complement control module/SCR domain  
PTSG_03003T0   0.000000000000139   216-283   Complement control module/SCR domain  
  0.00000000000181   398-468   Complement control module/SCR domain  
  0.0000000000278   279-347   Complement control module/SCR domain  
  0.0000000000278   337-408   Complement control module/SCR domain  
  0.0000000000324   513-578   Complement control module/SCR domain  
  0.00000000172   453-504   Complement control module/SCR domain  
PTSG_03008T0   0.0000000459   823-891   Complement control module/SCR domain  
  0.00000195   273-338   Complement control module/SCR domain  
  0.00000391   463-532   Complement control module/SCR domain  
  0.00000709   347-401   Complement control module/SCR domain  
  0.0000118   543-585   Complement control module/SCR domain  
  0.0000681   397-466   Complement control module/SCR domain  
  0.000588   576-641   Complement control module/SCR domain  
PTSG_03456T0   0.0000000167   340-400   Complement control module/SCR domain  
  0.0000000917   521-588   Complement control module/SCR domain  
  0.00000139   478-532   Complement control module/SCR domain  
  0.00000208   686-727   Complement control module/SCR domain  
  0.00000306   781-843   Complement control module/SCR domain  
  0.00000598   741-787   Complement control module/SCR domain  
  0.00000653   394-460   Complement control module/SCR domain  
  0.00459   288-335   Complement control module/SCR domain  
  0.025   600-655   Complement control module/SCR domain  
PTSG_03992T0   0.0000791   23-77   Complement control module/SCR domain  
  0.000848   94-136   Complement control module/SCR domain  
PTSG_05334T0   0.0000000000000334   222-290   Complement control module/SCR domain  
  0.000000000000403   324-390   Complement control module/SCR domain  
  0.0000000000403   528-587   Complement control module/SCR domain  
  0.0000000334   381-439   Complement control module/SCR domain  
PTSG_07191T0   0.0000000000153   378-441   Complement control module/SCR domain  
  0.00000032   627-690   Complement control module/SCR domain  
  0.000000431   891-959   Complement control module/SCR domain  
  0.000000556   453-505   Complement control module/SCR domain  
  0.00000723   706-743   Complement control module/SCR domain  
PTSG_07192T0   0.0000252   176-243   Complement control module/SCR domain  
PTSG_07263T0   0.00000000903   1257-1315   Complement control module/SCR domain  
  0.0000143   1053-1117   Complement control module/SCR domain  
  0.0817   1327-1361   Complement control module/SCR domain  
PTSG_07442T0   0.0000199   186-252   Complement control module/SCR domain  
PTSG_07443T0   0.00000000306   619-685   Complement control module/SCR domain  
  0.000000132   366-424   Complement control module/SCR domain  
  0.000000195   435-489   Complement control module/SCR domain  
  0.000000375   552-619   Complement control module/SCR domain  
  0.00000153   675-742   Complement control module/SCR domain  
  0.00000167   896-967   Complement control module/SCR domain  
  0.0000278   479-556   Complement control module/SCR domain  
PTSG_07477T0   0.0000239   155-209   Complement control module/SCR domain  
PTSG_07575T0   0.000000959   274-332   Complement control module/SCR domain  
  0.000153   234-286   Complement control module/SCR domain  
PTSG_07903T0   0.00000000000375   808-872   Complement control module/SCR domain  
  0.00000000000917   985-1052   Complement control module/SCR domain  
  0.00000000486   925-996   Complement control module/SCR domain  
  0.0000000139   873-934   Complement control module/SCR domain  
  0.000000737   1043-1101   Complement control module/SCR domain  
  0.00848   1185-1246   Complement control module/SCR domain  
PTSG_08400T0   0.00000000639   465-535   Complement control module/SCR domain  
  0.000000431   391-452   Complement control module/SCR domain  
  0.00000278   525-591   Complement control module/SCR domain  
  0.00000834   759-824   Complement control module/SCR domain  
PTSG_08988T0   0.000000000000032   928-996   Complement control module/SCR domain  
  0.000000000000431   1099-1165   Complement control module/SCR domain  
  0.00000000000834   1300-1359   Complement control module/SCR domain  
  0.000000000222   1038-1110   Complement control module/SCR domain  
  0.0000000306   1156-1214   Complement control module/SCR domain  
PTSG_08990T0   0.0000000000000751   842-911   Complement control module/SCR domain  
  0.000000000000417   906-973   Complement control module/SCR domain  
  0.00000000000111   1024-1090   Complement control module/SCR domain  
  0.0000000000139   1225-1284   Complement control module/SCR domain  
  0.000000000528   963-1035   Complement control module/SCR domain  
  0.0000000347   1081-1139   Complement control module/SCR domain  
PTSG_08991T0   0.0000000000000208   695-763   Complement control module/SCR domain  
  0.0000000000000826   759-826   Complement control module/SCR domain  
  0.0199   816-847   Complement control module/SCR domain  
PTSG_09548T0   0.00000000167   472-544   Complement control module/SCR domain  
  0.0000000556   536-605   Complement control module/SCR domain  
  0.000000264   340-396   Complement control module/SCR domain  
  0.000000334   390-456   Complement control module/SCR domain  
  0.000000639   596-662   Complement control module/SCR domain  
  0.000000862   839-903   Complement control module/SCR domain  
PTSG_09719T0   0.000000000361   221-283   Complement control module/SCR domain  
PTSG_09788T0   0.00000163   427-474   Complement control module/SCR domain  
PTSG_09992T0   0.00000778   76-130   Complement control module/SCR domain  
PTSG_10194T0   0.000000000000195   790-852   Complement control module/SCR domain  
  0.000000000000375   968-1034   Complement control module/SCR domain  
  0.000000000000695   854-917   Complement control module/SCR domain  
  0.0000000000118   1169-1228   Complement control module/SCR domain  
  0.00000000032   907-979   Complement control module/SCR domain  
  0.000000032   1025-1083   Complement control module/SCR domain  
PTSG_10665T0   0.0000219   245-311   Complement control module/SCR domain  
PTSG_11057T0   0.0000195   186-252   Complement control module/SCR domain  
PTSG_11058T0   0.000000121   313-371   Complement control module/SCR domain  
  0.000000208   382-436   Complement control module/SCR domain  
  0.000000361   499-567   Complement control module/SCR domain  
  0.000000403   562-631   Complement control module/SCR domain  
  0.00000153   842-913   Complement control module/SCR domain  
  0.00000153   621-688   Complement control module/SCR domain  
  0.000032   426-503   Complement control module/SCR domain  
PTSG_11192T0   0.00000000195   171-243   Complement control module/SCR domain  
  0.0000000375   235-304   Complement control module/SCR domain  
  0.0000000542   104-175   Complement control module/SCR domain  
  0.000000181   5-51   Complement control module/SCR domain  
  0.000000181   45-111   Complement control module/SCR domain  
  0.000000403   538-602   Complement control module/SCR domain  
  0.000000431   295-361   Complement control module/SCR domain  
PTSG_11500T0   0.000000000000264   643-707   Complement control module/SCR domain  
PTSG_11510T0   0.0000000292   50-102   Complement control module/SCR domain  
  0.00278   92-146   Complement control module/SCR domain  
  0.00653   3-38   Complement control module/SCR domain  
 
Weak hits:
PTSG_00614T0   0.00132   418-468   Complement control module/SCR domain  
  0.00194   705-753   Complement control module/SCR domain  
PTSG_01845T0   0.0178   391-443   Complement control module/SCR domain  
PTSG_01887T0   0.00458   57-103   Complement control module/SCR domain  
PTSG_01901T0   0.00158   653-709   Complement control module/SCR domain  
PTSG_02061T0   0.0146   123-174   Complement control module/SCR domain  
  0.0149   164-228   Complement control module/SCR domain  
  0.0435   56-108   Complement control module/SCR domain  
PTSG_03009T0   0.00504   193-259   Complement control module/SCR domain  
PTSG_03475T0   0.00733   35-100   Complement control module/SCR domain  
PTSG_04006T0   0.000347   119-168   Complement control module/SCR domain  
  0.0005   48-102   Complement control module/SCR domain  
  0.00403   157-219   Complement control module/SCR domain  
PTSG_06031T0   0.00012   429-466   Complement control module/SCR domain  
PTSG_06479T0   0.0649   80-122   Complement control module/SCR domain  
PTSG_06730T0   0.00125   475-557   Complement control module/SCR domain  
PTSG_07019T0   0.000158   222-284   Complement control module/SCR domain  
PTSG_07265T0   0.00126   90-155   Complement control module/SCR domain  
PTSG_07496T0   0.00316   194-249   Complement control module/SCR domain  
PTSG_08331T0   0.00012   694-757   Complement control module/SCR domain  
PTSG_08401T0   0.00406   67-121   Complement control module/SCR domain  
PTSG_08525T0   0.0915   158-220   Complement control module/SCR domain  
PTSG_09549T0   0.000595   187-253   Complement control module/SCR domain  
PTSG_10215T0   0.0494   242-290   Complement control module/SCR domain  
PTSG_11194T0   0.00114   193-259   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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