SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


CCCH zinc finger superfamily domain assignments
in
Glycine max v109

Assignment details

(show help)


Glycine max v109 has 259 significant domains in 124 proteins.

     

Sequence ID   Evalue   Region   Family  
Glyma01g10610.1|PACid:16243950   0.00000000072   233-266   CCCH zinc finger  
  0.0000000895   90-123   CCCH zinc finger  
  0.000000144   156-185   CCCH zinc finger  
Glyma01g37260.1|PACid:16245459   0.0000733   341-363   CCCH zinc finger  
Glyma01g43700.1|PACid:16246207   0.0000144   217-239   CCCH zinc finger  
Glyma02g17250.1|PACid:16248374   0.00000051   49-74   CCCH zinc finger  
  0.00000209   93-118   CCCH zinc finger  
  0.0000034   137-164   CCCH zinc finger  
  0.000034   297-321   CCCH zinc finger  
Glyma02g17250.2|PACid:16248375   0.000000445   19-44   CCCH zinc finger  
  0.00000183   63-88   CCCH zinc finger  
  0.00000301   107-134   CCCH zinc finger  
  0.0000301   267-291   CCCH zinc finger  
Glyma02g17260.1|PACid:16248376   0.00000222   343-371   CCCH zinc finger  
  0.00000327   96-121   CCCH zinc finger  
  0.00000392   52-77   CCCH zinc finger  
  0.00000615   141-167   CCCH zinc finger  
  0.0000497   300-324   CCCH zinc finger  
Glyma02g17260.2|PACid:16248377   0.00000222   96-121   CCCH zinc finger  
  0.00000275   52-77   CCCH zinc finger  
  0.00000419   141-167   CCCH zinc finger  
  0.000034   300-324   CCCH zinc finger  
Glyma02g29360.1|PACid:16248780   0.0000000275   261-291   CCCH zinc finger  
  0.000000034   95-127   CCCH zinc finger  
  0.00000981   33-58   CCCH zinc finger  
Glyma02g39050.1|PACid:16249531   0.00000235   95-117   CCCH zinc finger  
  0.0848   14-34   CCCH zinc finger  
Glyma02g39050.2|PACid:16249532   0.00000188   95-117   CCCH zinc finger  
  0.0706   14-34   CCCH zinc finger  
Glyma02g39100.1|PACid:16249537   0.0000249   133-155   CCCH zinc finger  
Glyma02g43510.1|PACid:16250031   0.000000523   274-299   CCCH zinc finger  
  0.00000209   130-159   CCCH zinc finger  
  0.00000262   91-115   CCCH zinc finger  
  0.00000929   49-71   CCCH zinc finger  
  0.0000209   311-339   CCCH zinc finger  
Glyma02g47360.1|PACid:16250499   0.00000563   159-182   CCCH zinc finger  
Glyma03g02000.1|PACid:16250835   0.00000968   42-64   CCCH zinc finger  
Glyma03g02010.1|PACid:16250837   0.00000968   42-64   CCCH zinc finger  
Glyma03g02020.1|PACid:16250838   0.00000837   42-64   CCCH zinc finger  
Glyma03g02020.3|PACid:16250840   0.00000824   11-33   CCCH zinc finger  
Glyma03g02920.1|PACid:16250935   0.00000000196   191-223   CCCH zinc finger  
Glyma03g30020.1|PACid:16252794   0.00000000746   260-291   CCCH zinc finger  
  0.0000000392   99-131   CCCH zinc finger  
  0.0000102   35-60   CCCH zinc finger  
Glyma03g30020.2|PACid:16252795   0.00000000497   190-221   CCCH zinc finger  
  0.0000000262   29-61   CCCH zinc finger  
Glyma03g30030.1|PACid:16252796   0.00000000746   260-291   CCCH zinc finger  
  0.0000000392   99-131   CCCH zinc finger  
  0.0000102   35-60   CCCH zinc finger  
Glyma03g30030.2|PACid:16252797   0.00000000497   190-221   CCCH zinc finger  
  0.0000000262   29-61   CCCH zinc finger  
Glyma03g33420.1|PACid:16253191   0.00000484   88-113   CCCH zinc finger  
Glyma04g01040.1|PACid:16254413   0.0000392   1284-1304   CCCH zinc finger  
Glyma04g05290.1|PACid:16254935   0.0000361   75-105   CCCH zinc finger  
  0.0565   108-139   CCCH zinc finger  
Glyma04g36670.1|PACid:16256965   0.00000366   327-353   CCCH zinc finger  
  0.00000536   232-261   CCCH zinc finger  
  0.000012   510-536   CCCH zinc finger  
  0.0000196   467-491   CCCH zinc finger  
  0.000034   284-308   CCCH zinc finger  
Glyma05g02920.1|PACid:16258120   0.00000432   241-265   CCCH zinc finger  
  0.00000445   420-448   CCCH zinc finger  
  0.0000101   142-171   CCCH zinc finger  
  0.000011   193-220   CCCH zinc finger  
  0.0000196   381-405   CCCH zinc finger  
Glyma05g08450.1|PACid:16258672   0.000000000183   226-258   CCCH zinc finger  
  0.0000000523   81-114   CCCH zinc finger  
  0.000000262   144-171   CCCH zinc finger  
Glyma05g26620.1|PACid:16259733   0.0000144   120-144   CCCH zinc finger  
  0.034   63-83   CCCH zinc finger  
Glyma05g37520.1|PACid:16261024   0.00000000196   191-223   CCCH zinc finger  
Glyma05g37520.2|PACid:16261025   0.00000000196   191-223   CCCH zinc finger  
Glyma06g05300.1|PACid:16261800   0.0000628   78-108   CCCH zinc finger  
Glyma06g15720.1|PACid:16263094   0.0000366   252-277   CCCH zinc finger  
  0.000131   133-158   CCCH zinc finger  
  0.00157   190-214   CCCH zinc finger  
Glyma06g18240.1|PACid:16263387   0.0000017   107-133   CCCH zinc finger  
  0.00000419   288-316   CCCH zinc finger  
  0.00000602   34-63   CCCH zinc finger  
  0.0000106   247-271   CCCH zinc finger  
  0.00353   67-87   CCCH zinc finger  
Glyma07g37980.1|PACid:16269100   0.00000144   48-76   CCCH zinc finger  
  0.00000353   96-120   CCCH zinc finger  
  0.00000366   140-167   CCCH zinc finger  
  0.0000109   355-381   CCCH zinc finger  
  0.0000262   308-334   CCCH zinc finger  
Glyma08g09630.1|PACid:16270557   0.00000955   117-141   CCCH zinc finger  
  0.034   60-80   CCCH zinc finger  
Glyma08g16340.1|PACid:16271360   0.000000955   4-26   CCCH zinc finger  
  0.0000262   32-53   CCCH zinc finger  
  0.00209   140-165   CCCH zinc finger  
  0.00392   297-328   CCCH zinc finger  
Glyma08g16360.1|PACid:16271362   0.00000144   3-25   CCCH zinc finger  
  0.0000262   24-49   CCCH zinc finger  
  0.0262   241-269   CCCH zinc finger  
Glyma08g25050.1|PACid:16272401   0.00000235   402-428   CCCH zinc finger  
  0.00000497   241-265   CCCH zinc finger  
  0.0000109   454-477   CCCH zinc finger  
  0.0000262   318-341   CCCH zinc finger  
  0.0000419   144-171   CCCH zinc finger  
  0.0000549   200-221   CCCH zinc finger  
Glyma08g39400.1|PACid:16273243   0.0000000675   157-189   CCCH zinc finger  
Glyma08g43270.1|PACid:16273681   0.00000235   176-202   CCCH zinc finger  
  0.000183   146-175   CCCH zinc finger  
Glyma08g43320.1|PACid:16273688   0.0000628   141-165   CCCH zinc finger  
Glyma08g43790.1|PACid:16273740   0.0000589   83-106   CCCH zinc finger  
Glyma09g02570.1|PACid:16274554   0.0000327   69-100   CCCH zinc finger  
  0.00116   125-148   CCCH zinc finger  
Glyma09g17210.1|PACid:16275830   0.000000107   103-134   CCCH zinc finger  
Glyma09g27300.1|PACid:16276394   0.000000772   100-123   CCCH zinc finger  
Glyma09g35980.1|PACid:16277343   0.0000392   227-249   CCCH zinc finger  
Glyma09g35990.1|PACid:16277344   0.0000406   176-198   CCCH zinc finger  
Glyma09g35990.2|PACid:16277345   0.0000392   176-198   CCCH zinc finger  
Glyma09g38650.1|PACid:16277661   0.00000183   87-112   CCCH zinc finger  
  0.00000288   132-157   CCCH zinc finger  
  0.0000116   289-315   CCCH zinc finger  
  0.000017   335-359   CCCH zinc finger  
  0.0000327   43-66   CCCH zinc finger  
Glyma09g38650.2|PACid:16277662   0.0000017   72-97   CCCH zinc finger  
  0.00000275   117-142   CCCH zinc finger  
  0.0000111   274-300   CCCH zinc finger  
  0.000017   320-344   CCCH zinc finger  
  0.0000353   17-40   CCCH zinc finger  
Glyma10g02540.1|PACid:16278338   0.00000131   338-366   CCCH zinc finger  
  0.00000222   97-122   CCCH zinc finger  
  0.00000235   141-168   CCCH zinc finger  
  0.00000379   53-78   CCCH zinc finger  
  0.0000458   296-319   CCCH zinc finger  
Glyma10g02550.1|PACid:16278339   0.00000209   52-77   CCCH zinc finger  
  0.00000235   342-371   CCCH zinc finger  
  0.00000327   96-121   CCCH zinc finger  
  0.00000589   141-167   CCCH zinc finger  
  0.0000563   300-324   CCCH zinc finger  
Glyma10g02550.2|PACid:16278340   0.00000144   52-77   CCCH zinc finger  
  0.00000222   96-121   CCCH zinc finger  
  0.00000406   141-167   CCCH zinc finger  
  0.0000379   300-324   CCCH zinc finger  
Glyma10g05550.1|PACid:16278674   0.00000641   89-114   CCCH zinc finger  
Glyma10g28540.1|PACid:16280227   0.0000000523   51-79   CCCH zinc finger  
Glyma10g31370.1|PACid:16280576   0.00000222   87-112   CCCH zinc finger  
  0.00000235   132-157   CCCH zinc finger  
  0.00000837   285-311   CCCH zinc finger  
  0.0000131   330-355   CCCH zinc finger  
  0.000017   43-66   CCCH zinc finger  
Glyma10g31370.2|PACid:16280577   0.00000209   67-92   CCCH zinc finger  
  0.00000222   112-137   CCCH zinc finger  
  0.00000785   265-291   CCCH zinc finger  
  0.0000126   310-335   CCCH zinc finger  
  0.0000157   23-46   CCCH zinc finger  
Glyma10g31370.3|PACid:16280578   0.00000222   87-112   CCCH zinc finger  
  0.00000235   132-157   CCCH zinc finger  
  0.00000837   285-311   CCCH zinc finger  
  0.0000131   330-355   CCCH zinc finger  
  0.000017   43-66   CCCH zinc finger  
Glyma10g41530.1|PACid:16281765   0.0000000000235   197-232   CCCH zinc finger  
  0.0000000523   234-268   CCCH zinc finger  
Glyma10g44330.1|PACid:16282098   0.00000000994   262-293   CCCH zinc finger  
  0.0000000209   97-130   CCCH zinc finger  
  0.00000759   34-59   CCCH zinc finger  
Glyma11g01780.1|PACid:16282342   0.0000144   227-249   CCCH zinc finger  
Glyma11g07890.1|PACid:16283063   0.00000314   1193-1217   CCCH zinc finger  
Glyma11g11630.1|PACid:16283527   0.0000487   3-27   CCCH zinc finger  
Glyma11g11630.2|PACid:16283528   0.0000471   3-27   CCCH zinc finger  
Glyma12g01340.1|PACid:16285958   0.0000432   225-247   CCCH zinc finger  
Glyma12g01340.2|PACid:16285959   0.0000432   225-247   CCCH zinc finger  
Glyma12g01350.1|PACid:16285960   0.0000432   232-254   CCCH zinc finger  
Glyma12g01350.2|PACid:16285961   0.0000301   54-76   CCCH zinc finger  
Glyma12g01900.1|PACid:16286035   0.0000122   3-28   CCCH zinc finger  
Glyma12g07300.1|PACid:16286728   0.00000173   27-62   CCCH zinc finger  
Glyma13g03760.1|PACid:16289556   0.00000644   159-182   CCCH zinc finger  
Glyma13g16390.1|PACid:16290475   0.000017   312-338   CCCH zinc finger  
  0.000115   345-370   CCCH zinc finger  
Glyma13g19900.1|PACid:16290898   0.00000484   88-113   CCCH zinc finger  
Glyma13g28820.1|PACid:16291918   0.00000275   51-77   CCCH zinc finger  
  0.00000549   145-170   CCCH zinc finger  
  0.00000654   95-121   CCCH zinc finger  
  0.0000131   363-388   CCCH zinc finger  
Glyma14g01390.1|PACid:16293962   0.00000563   159-182   CCCH zinc finger  
Glyma14g01930.1|PACid:16294026   0.0000523   178-201   CCCH zinc finger  
Glyma14g01930.2|PACid:16294027   0.0000379   178-201   CCCH zinc finger  
Glyma14g05460.1|PACid:16294451   0.000000536   275-300   CCCH zinc finger  
  0.00000249   91-115   CCCH zinc finger  
  0.00000419   130-158   CCCH zinc finger  
  0.0000115   49-71   CCCH zinc finger  
  0.0000209   312-340   CCCH zinc finger  
Glyma14g05460.2|PACid:16294452   0.000000536   274-299   CCCH zinc finger  
  0.00000249   90-114   CCCH zinc finger  
  0.00000419   129-157   CCCH zinc finger  
  0.0000115   48-70   CCCH zinc finger  
  0.0000209   311-339   CCCH zinc finger  
Glyma14g14170.1|PACid:16295428   0.0000615   133-155   CCCH zinc finger  
Glyma14g37100.1|PACid:16296682   0.00000173   94-117   CCCH zinc finger  
Glyma14g37180.1|PACid:16296692   0.0000249   133-155   CCCH zinc finger  
Glyma14g39390.1|PACid:16296931   0.00000288   47-71   CCCH zinc finger  
  0.0000222   104-128   CCCH zinc finger  
  0.000157   74-103   CCCH zinc finger  
Glyma15g08320.1|PACid:16298067   0.00000301   48-72   CCCH zinc finger  
Glyma15g10230.1|PACid:16298285   0.00000222   50-77   CCCH zinc finger  
  0.0000051   96-121   CCCH zinc finger  
  0.0000051   142-167   CCCH zinc finger  
  0.0000196   357-382   CCCH zinc finger  
Glyma15g13480.1|PACid:16298666   0.000034   69-100   CCCH zinc finger  
  0.00122   125-148   CCCH zinc finger  
Glyma15g19130.1|PACid:16299285   0.00000148   95-117   CCCH zinc finger  
  0.0518   14-34   CCCH zinc finger  
Glyma15g19140.1|PACid:16299286   0.00000235   95-117   CCCH zinc finger  
  0.0895   15-34   CCCH zinc finger  
Glyma15g19150.1|PACid:16299287   0.00000267   84-106   CCCH zinc finger  
Glyma15g19160.1|PACid:16299288   0.00000204   64-86   CCCH zinc finger  
Glyma15g19170.1|PACid:16299289   0.0000014   42-66   CCCH zinc finger  
Glyma15g19180.1|PACid:16299290   0.00000235   55-79   CCCH zinc finger  
Glyma15g19190.1|PACid:16299291   0.0000022   84-106   CCCH zinc finger  
Glyma15g19200.1|PACid:16299292   0.00000235   55-79   CCCH zinc finger  
Glyma15g19210.1|PACid:16299293   0.0000022   84-106   CCCH zinc finger  
Glyma15g19230.1|PACid:16299295   0.00000188   84-106   CCCH zinc finger  
  0.0863   15-34   CCCH zinc finger  
Glyma15g19240.1|PACid:16299296   0.00000148   95-117   CCCH zinc finger  
  0.0769   14-34   CCCH zinc finger  
Glyma15g19250.1|PACid:16299297   0.0000267   41-63   CCCH zinc finger  
Glyma15g19260.1|PACid:16299298   0.0000022   84-106   CCCH zinc finger  
Glyma15g19270.1|PACid:16299299   0.0000022   84-106   CCCH zinc finger  
  0.1   15-34   CCCH zinc finger  
Glyma15g19280.1|PACid:16299300   0.0000022   84-106   CCCH zinc finger  
  0.0801   14-34   CCCH zinc finger  
Glyma15g19290.1|PACid:16299301   0.00000173   95-117   CCCH zinc finger  
  0.0644   14-34   CCCH zinc finger  
Glyma15g30180.1|PACid:16299962   0.00000144   456-482   CCCH zinc finger  
  0.00000471   305-329   CCCH zinc finger  
  0.000013   508-531   CCCH zinc finger  
  0.0034   267-285   CCCH zinc finger  
Glyma15g42750.1|PACid:16300872   0.000000379   3-26   CCCH zinc finger  
  0.0000222   32-53   CCCH zinc finger  
  0.000667   140-165   CCCH zinc finger  
  0.00445   297-327   CCCH zinc finger  
Glyma15g42820.1|PACid:16300879   0.000000877   3-25   CCCH zinc finger  
  0.000089   25-49   CCCH zinc finger  
  0.0301   281-309   CCCH zinc finger  
Glyma16g32370.1|PACid:16303620   0.000000837   101-124   CCCH zinc finger  
Glyma17g02720.1|PACid:16304187   0.00000144   48-76   CCCH zinc finger  
  0.00000366   96-121   CCCH zinc finger  
  0.00000366   140-167   CCCH zinc finger  
  0.0000109   355-381   CCCH zinc finger  
  0.0000183   308-334   CCCH zinc finger  
Glyma17g02720.2|PACid:16304188   0.00000288   58-85   CCCH zinc finger  
  0.00000863   273-299   CCCH zinc finger  
  0.0000144   226-252   CCCH zinc finger  
  0.000615   19-39   CCCH zinc finger  
Glyma17g06240.1|PACid:16304601   0.0000157   331-357   CCCH zinc finger  
  0.0000942   364-389   CCCH zinc finger  
Glyma17g12510.1|PACid:16305339   0.0000536   64-85   CCCH zinc finger  
Glyma17g12560.1|PACid:16305344   0.00000000262   226-254   CCCH zinc finger  
  0.000000051   81-114   CCCH zinc finger  
  0.000000235   144-171   CCCH zinc finger  
Glyma17g13580.1|PACid:16305464   0.0000034   249-275   CCCH zinc finger  
  0.00000458   430-458   CCCH zinc finger  
  0.0000113   203-230   CCCH zinc finger  
  0.0000157   152-181   CCCH zinc finger  
  0.0000288   391-415   CCCH zinc finger  
Glyma17g13580.2|PACid:16305465   0.00000314   249-275   CCCH zinc finger  
  0.0000105   203-230   CCCH zinc finger  
  0.0000144   152-181   CCCH zinc finger  
  0.0000275   391-415   CCCH zinc finger  
Glyma18g10210.1|PACid:16308465   0.0000615   142-166   CCCH zinc finger  
Glyma18g10310.1|PACid:16308475   0.00000196   124-151   CCCH zinc finger  
  0.0000051   73-98   CCCH zinc finger  
  0.000942   100-120   CCCH zinc finger  
Glyma18g47660.1|PACid:16310753   0.00000275   87-112   CCCH zinc finger  
  0.00000432   132-157   CCCH zinc finger  
  0.000017   335-359   CCCH zinc finger  
  0.0000188   289-315   CCCH zinc finger  
  0.0000327   43-66   CCCH zinc finger  
Glyma19g32910.1|PACid:16313559   0.0000000144   260-291   CCCH zinc finger  
  0.000000034   98-130   CCCH zinc finger  
  0.0000102   35-60   CCCH zinc finger  
Glyma19g32910.2|PACid:16313560   0.00000000955   190-221   CCCH zinc finger  
  0.0000000222   28-60   CCCH zinc finger  
Glyma19g36150.1|PACid:16313937   0.00000746   98-122   CCCH zinc finger  
Glyma20g10260.1|PACid:16315791   0.00000675   159-182   CCCH zinc finger  
Glyma20g25710.1|PACid:16316827   0.0000000000262   217-252   CCCH zinc finger  
  0.0000000576   254-288   CCCH zinc finger  
Glyma20g36140.1|PACid:16318034   0.00000222   86-111   CCCH zinc finger  
  0.00000235   131-156   CCCH zinc finger  
  0.0000113   338-363   CCCH zinc finger  
  0.0000262   42-65   CCCH zinc finger  
  0.0000314   293-319   CCCH zinc finger  
Glyma20g39160.1|PACid:16318374   0.00000000759   262-293   CCCH zinc finger  
  0.0000000209   97-130   CCCH zinc finger  
  0.00000759   34-59   CCCH zinc finger  
 
Weak hits:
Glyma01g00820.1|PACid:16242955   0.000608   126-155   CCCH zinc finger  
Glyma02g05570.1|PACid:16247086   0.000406   442-466   CCCH zinc finger  
Glyma02g05580.1|PACid:16247087   0.000235   440-465   CCCH zinc finger  
Glyma02g39210.1|PACid:16249548   0.00491   265-295   CCCH zinc finger  
  0.0903   298-329   CCCH zinc finger  
Glyma02g39210.2|PACid:16249549   0.00491   265-295   CCCH zinc finger  
  0.0903   298-329   CCCH zinc finger  
Glyma02g46610.1|PACid:16250419   0.000518   257-285   CCCH zinc finger  
Glyma02g46760.1|PACid:16250435   0.0143   165-181   CCCH zinc finger  
Glyma03g29500.1|PACid:16252729   0.00667   272-301   CCCH zinc finger  
Glyma03g34840.1|PACid:16253349   0.000837   16-40   CCCH zinc finger  
  0.00145   153-176   CCCH zinc finger  
Glyma04g00940.1|PACid:16254397   0.00458   86-114   CCCH zinc finger  
  0.0144   125-144   CCCH zinc finger  
Glyma04g02820.1|PACid:16254641   0.000471   382-405   CCCH zinc finger  
Glyma05g08910.1|PACid:16258732   0.000288   195-224   CCCH zinc finger  
Glyma05g36110.1|PACid:16260871   0.000216   113-143   CCCH zinc finger  
Glyma06g02830.1|PACid:16261501   0.000536   362-385   CCCH zinc finger  
Glyma06g44440.1|PACid:16265155   0.000188   116-146   CCCH zinc finger  
Glyma06g46320.1|PACid:16265355   0.000137   4-35   CCCH zinc finger  
Glyma07g15240.1|PACid:16267349   0.000392   124-153   CCCH zinc finger  
Glyma07g20090.1|PACid:16267815   0.000235   16-41   CCCH zinc finger  
  0.00188   149-172   CCCH zinc finger  
Glyma07g20090.2|PACid:16267816   0.000235   16-41   CCCH zinc finger  
  0.00188   149-172   CCCH zinc finger  
Glyma08g03540.1|PACid:16269829   0.000255   140-170   CCCH zinc finger  
Glyma08g17310.1|PACid:16271468   0.00549   322-354   CCCH zinc finger  
  0.0114   192-218   CCCH zinc finger  
Glyma09g15600.1|PACid:16275689   0.00353   297-326   CCCH zinc finger  
  0.0989   332-359   CCCH zinc finger  
Glyma10g21950.1|PACid:16279732   0.00314   269-299   CCCH zinc finger  
Glyma11g27130.1|PACid:16284758   0.00173   226-256   CCCH zinc finger  
  0.053   262-288   CCCH zinc finger  
Glyma12g10890.1|PACid:16287125   0.000196   4-35   CCCH zinc finger  
Glyma12g10890.3|PACid:16287127   0.000196   4-35   CCCH zinc finger  
Glyma12g13300.1|PACid:16287351   0.000204   123-153   CCCH zinc finger  
Glyma12g30590.1|PACid:16288417   0.00175   149-172   CCCH zinc finger  
  0.00424   17-39   CCCH zinc finger  
Glyma12g30590.2|PACid:16288418   0.00175   149-172   CCCH zinc finger  
  0.00424   17-39   CCCH zinc finger  
Glyma12g33320.1|PACid:16288738   0.000491   114-144   CCCH zinc finger  
Glyma12g36600.1|PACid:16289115   0.00353   274-303   CCCH zinc finger  
  0.0958   309-336   CCCH zinc finger  
Glyma13g09610.1|PACid:16290134   0.00283   1666-1688   CCCH zinc finger  
  0.00392   1633-1666   CCCH zinc finger  
  0.0361   1558-1590   CCCH zinc finger  
Glyma13g09610.2|PACid:16290135   0.0451   1558-1590   CCCH zinc finger  
Glyma13g09610.3|PACid:16290136   0.0361   1558-1590   CCCH zinc finger  
Glyma13g27280.1|PACid:16291737   0.00334   274-303   CCCH zinc finger  
  0.0942   309-336   CCCH zinc finger  
Glyma13g37110.1|PACid:16292902   0.00118   154-184   CCCH zinc finger  
Glyma14g01990.1|PACid:16294033   0.000534   269-297   CCCH zinc finger  
Glyma14g01990.2|PACid:16294034   0.000534   269-297   CCCH zinc finger  
Glyma14g37330.1|PACid:16296705   0.0033   267-290   CCCH zinc finger  
Glyma15g19120.1|PACid:16299284   0.000251   84-106   CCCH zinc finger  
  0.0659   14-34   CCCH zinc finger  
Glyma15g39220.1|PACid:16300498   0.00589   304-336   CCCH zinc finger  
  0.053   174-200   CCCH zinc finger  
Glyma15g43030.1|PACid:16300901   0.00353   297-326   CCCH zinc finger  
  0.0989   332-359   CCCH zinc finger  
Glyma18g06980.1|PACid:16308153   0.00204   258-288   CCCH zinc finger  
  0.0549   294-320   CCCH zinc finger  
Glyma18g09020.1|PACid:16308353   0.000144   153-176   CCCH zinc finger  
Glyma19g00510.1|PACid:16311432   0.000314   223-252   CCCH zinc finger  
Glyma19g32340.1|PACid:16313489   0.00608   250-273   CCCH zinc finger  
Glyma19g37530.1|PACid:16314101   0.000837   16-40   CCCH zinc finger  
  0.00145   153-176   CCCH zinc finger  
Glyma20g00950.1|PACid:16315103   0.00188   149-172   CCCH zinc finger  
  0.00235   17-39   CCCH zinc finger  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a CCCH zinc finger domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   129352 129352
No Yes Homo sapiens 76_38 Human 152 112
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 50 32
No Yes Gorilla gorilla 76_3.1 Western gorilla 70 45
No Yes Pongo abelii 76_2 Sumatran orangutan 47 31
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 53 36
No Yes Papio anubis 76 Olive baboon 62 36
No Yes Macaca mulatta 76_1 Rhesus monkey 63 47
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 96 63
No Yes Otolemur garnettii 76_3 Small-eared galago 46 31
No Yes Microcebus murinus 76_1 Gray mouse lemur 25 15
No Yes Rattus norvegicus 76_5.0 Norway rat 59 37
No Yes Mus musculus 76_38 House mouse 97 68
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 29 21
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 45 28
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 40 29
No Yes Cavia porcellus 76_3 Domestic guinea pig 46 28
No Yes Oryctolagus cuniculus 76_2 Rabbit 47 31
No Yes Ochotona princeps 76 American pika 26 16
No Yes Tupaia belangeri 76 Northern tree shrew 25 19
No Yes Sus scrofa 76_10.2 Pig 47 33
No Yes Bos taurus 76_3.1 Cattle 46 29
No Yes Ovis aries 76_3.1 Sheep 43 30
No Yes Vicugna pacos 76_1 Alpaca 22 16
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 33 24
No Yes Mustela putorius furo 76_1.0 Domestic ferret 47 30
No Yes Ailuropoda melanoleuca 76_1 Giant panda 44 31
No Yes Canis familiaris 76_3.1 Dog 57 38
No Yes Felis catus 76_6.2 Domestic cat 45 31
No Yes Equus caballus 76_2 Horse 33 24
No Yes Myotis lucifugus 76_2.0 Little brown bat 39 28
No Yes Pteropus vampyrus 76_1 Large flying fox 38 24
No Yes Sorex araneus 76_1 European shrew 23 16
No Yes Erinaceus europaeus 76 Western European hedgehog 24 18
No Yes Procavia capensis 76_1 Cape rock hyrax 38 26
No Yes Loxodonta africana 76_3 African savanna elephant 54 34
No Yes Echinops telfairi 76 Small Madagascar hedgehog 20 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 50 33
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 21 15
No Yes Macropus eugenii 76_1.0 Tammar wallaby 25 18
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 35 26
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 39 28
No Yes Ornithorhynchus anatinus 76_5 Platypus 36 26
No Yes Saccoglossus kowalevskii v3.0   33 30
No Yes Petromyzon marinus 76_7.0 Sea lamprey 13 13
No Yes Meleagris gallopavo 76_2 Turkey 26 21
No Yes Gallus gallus 76_4 Chicken 26 19
No Yes Anas platyrhynchos 76_1.0 Mallard 30 21
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 31 23
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 33 22
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 33 22
No Yes Anolis carolinensis 76_2.0 Green anole 30 21
No Yes Xenopus laevis African clawed frog 124 73
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 61 37
No Yes Latimeria chalumnae 76_1 Coelacanth 55 41
No Yes Lepisosteus oculatus 76 Spotted gar 50 35
No Yes Gadus morhua 76_1 Atlantic cod 43 32
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 53 34
No Yes Takifugu rubripes 76_4 Torafugu 133 91
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 54 37
No Yes Oryzias latipes 76_1 Japanese medaka 46 33
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 53 34
No Yes Poecilia formosa 76 Amazon molly 54 34
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 63 41
No Yes Astyanax mexicanus 76 Mexican tetra 56 38
No Yes Danio rerio 76_9 Zebrafish 97 67
No Yes Oikopleura dioica   19 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 31 19
No Yes Ciona intestinalis 76 Vase tunicate 24 15
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 24 19
No Yes Adineta vaga   52 38
No Yes Octopus bimaculoides 280   20 17
No Yes Crassostrea gigas 22 Pacific oyster 20 17
No Yes Lottia gigantea Owl limpet 29 21
No Yes Helobdella robusta   23 17
No Yes Capitella sp. I   32 20
No Yes Danaus plexippus OGS1.0 Monarch butterfly 19 14
No Yes Heliconius melpomene Postman butterfly 19 14
No Yes Bombyx mori Domestic silkworm 18 13
No Yes Nasonia vitripennis Jewel wasp 18 12
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 44 32
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 20 14
No Yes Linepithema humile v1.1 Argentine ant 20 14
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 18 13
No Yes Solenopsis invicta v.2.2.3 Red fire ant 13 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 21 15
No Yes Atta cephalotes v1.1   20 14
No Yes Camponotus floridanus v3.3 Florida carpenter ant 22 16
No Yes Lucilia cuprina Australian sheep blowfly 16 14
No Yes Drosophila grimshawi 1.3   16 14
No Yes Drosophila willistoni 1.3   12 10
No Yes Drosophila pseudoobscura 2.13   15 13
No Yes Drosophila persimilis 1.3   14 12
No Yes Drosophila suzukii   16 14
No Yes Drosophila yakuba 1.3   14 12
No Yes Drosophila simulans 1.3   11 10
No Yes Drosophila sechellia 1.3   16 14
No Yes Drosophila melanogaster 76_5 Fruit fly 35 31
No Yes Drosophila erecta 1.3   15 13
No Yes Drosophila ananassae 1.3   15 13
No Yes Drosophila virilis 1.2   13 12
No Yes Drosophila mojavensis 1.3   15 13
No Yes Megaselia scalaris 22   6 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 20 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 16 12
No Yes Anopheles darlingi 22 American malaria mosquito 13 10
No Yes Anopheles gambiae 49_3j African malaria mosquito 12 10
No Yes Tribolium castaneum 3.0 Red flour beetle 18 14
No Yes Pediculus humanus corporis (Early assembly) Human body louse 14 11
No Yes Acyrthosiphon pisum Pea aphid 16 12
No Yes Rhodnius prolixus 22   11 10
No Yes Daphnia pulex Common water flea 21 16
No Yes Strigamia maritima 22   28 22
No Yes Sarcoptes scabiei   21 16
No Yes Tetranychus urticae Two-spotted spider mite 18 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 20 14
No Yes Pristionchus pacificus   24 17
No Yes Meloidogyne incognita Southern root-knot nematode 55 38
No Yes Meloidogyne hapla   28 19
No Yes Onchocerca volvulus 22   42 31
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 29
No Yes Caenorhabditis japonica   27 19
No Yes Caenorhabditis brenneri   36 25
No Yes Caenorhabditis remanei   33 23
No Yes Caenorhabditis elegans 76_235 Roundworm 60 39
No Yes Caenorhabditis briggsae 2   40 29
No Yes Trichinella spiralis 22   26 18
No Yes Hymenolepis microstoma   16 12
No Yes Echinococcus multilocularis   21 15
No Yes Echinococcus granulosus   20 14
No Yes Taenia solium Pork tapeworm 20 14
No Yes Schistosoma mansoni   29 18
No Yes Mnemiopsis leidyi Sea walnut 17 13
No Yes Thelohanellus kitauei   14 9
No Yes Acropora digitifera v1.0   23 20
No Yes Nematostella vectensis 1.0 Starlet sea anemone 22 19
No Yes Hydra vulgaris   22 18
No Yes Amphimedon queenslandica   26 17
No Yes Trichoplax adhaerens   10 8
No Yes Proterospongia sp. ATCC 50818   20 13
No Yes Monosiga brevicollis   14 10
No Yes Sphaeroforma arctica JP610   16 14
No Yes Capsaspora owczarzaki ATCC 30864   25 18
No Yes Conidiobolus coronatus NRRL28638 v1.0   16 11
No Yes Mortierella verticillata NRRL 6337   26 19
No Yes Phycomyces blakesleeanus   31 19
No Yes Rhizopus oryzae RA 99-880   25 15
No Yes Mucor circinelloides   22 15
No Yes Rhizomucor miehei CAU432   20 15
No Yes Malassezia globosa CBS 7966   12 10
No Yes Sporisorium reilianum 22   13 11
No Yes Ustilago maydis   12 9
No Yes Mixia osmundae IAM 14324 v1.0   12 9
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   13 11
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   8 7
No Yes Melampsora laricis-populina   16 12
No Yes Rhodotorula graminis WP1 v1.0   10 8
No Yes Sporobolomyces roseus IAM 13481   10 8
No Yes Microbotryum violaceum 22   13 10
No Yes Wallemia sebi v1.0   9 7
No Yes Sphaerobolus stellatus v1.0   19 13
No Yes Piloderma croceum F 1598 v1.0   20 16
No Yes Serpula lacrymans var. lacrymans S7.9   16 12
No Yes Coniophora puteana   18 14
No Yes Hydnomerulius pinastri v2.0   20 15
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   22 17
No Yes Pisolithus microcarpus 441 v1.0   29 16
No Yes Pisolithus tinctorius Marx 270 v1.0   41 20
No Yes Scleroderma citrinum Foug A v1.0   22 16
No Yes Coprinopsis cinerea okayama7 130 v3   17 14
No Yes Pleurotus ostreatus Oyster mushroom 22 17
No Yes Amanita thiersii Skay4041 v1.0   17 15
No Yes Amanita muscaria Koide v1.0 Fly agaric 24 18
No Yes Galerina marginata v1.0   23 16
No Yes Hebeloma cylindrosporum h7 v2.0   20 17
No Yes Laccaria bicolor S238N-H82   23 18
No Yes Agaricus bisporus var. bisporus   19 15
No Yes Schizophyllum commune   19 14
No Yes Stereum hirsutum FP-91666 SS1 v1.0   18 15
No Yes Heterobasidion annosum   15 12
No Yes Gloeophyllum trabeumv1.0   17 13
No Yes Punctularia strigosozonata v1.0   16 13
No Yes Sebacina vermifera MAFF 305830 v1.0   22 18
No Yes Fomitiporia mediterranea v1.0   22 16
No Yes Tulasnella calospora AL13/4D v1.0   30 21
No Yes Postia placenta   21 17
No Yes Wolfiporia cocos MD-104 SS10 v1.0   19 14
No Yes Fomitopsis pinicolav1.0   15 11
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   18 13
No Yes Phanerochaete chrysosporium RP-78 2.1   16 13
No Yes Dichomitus squalens   23 16
No Yes Trametes versicolor v1.0   21 15
No Yes Tremella mesenterica Witches' butter 8 8
No Yes Daldinia eschscholzii EC12 v1.0   15 13
No Yes Apiospora montagnei NRRL 25634 v1.0   18 15
No Yes Magnaporthe poae ATCC 64411 22   14 8
No Yes Magnaporthe grisea 70-15   11 8
No Yes Podospora anserina   15 11
No Yes Sporotrichum thermophile ATCC 42464   13 10
No Yes Thielavia terrestris NRRL 8126   15 12
No Yes Chaetomium globosum CBS 148.51   12 10
No Yes Neurospora tetrasperma   12 10
No Yes Neurospora discreta FGSC 8579   12 10
No Yes Neurospora crassa OR74A   14 11
No Yes Cryphonectria parasitica Chestnut blight fungus 12 9
No Yes Verticillium albo-atrum VaMs.102   9 7
No Yes Verticillium dahliae VdLs.17   12 9
No Yes Acremonium alcalophilumv 1.0   13 10
No Yes Glomerella graminicola 22   14 12
No Yes Fusarium graminearum   12 10
No Yes Nectria haematococca mpVI   13 11
No Yes Fusarium oxysporum f. sp. lycopersici 4286   14 12
No Yes Fusarium verticillioides 7600   13 10
No Yes Trichoderma asperellum CBS 433.97 v1.0   16 14
No Yes Trichoderma atroviride   13 11
No Yes Trichoderma citrinoviride v1.0   14 12
No Yes Trichoderma reesei 1.2   13 11
No Yes Trichoderma virens Gv29-8   15 11
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   14 12
No Yes Trichoderma harzianum CBS 226.95 v1.0   17 14
No Yes Amorphotheca resinae v1.0 Creosote fungus 19 13
No Yes Botrytis cinerea B05.10   18 11
No Yes Sclerotinia sclerotiorum   11 10
No Yes Blumeria graminis 22   11 8
No Yes Didymella exigua CBS 183.55 v1.0   11 10
No Yes Leptosphaeria maculans 22   13 12
No Yes Setosphaeria turcica v1.0   13 11
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   11 10
No Yes Cochliobolus victoriae FI3 v1.0   11 10
No Yes Cochliobolus carbonum 26-R-13 v1.0   11 10
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 9 8
No Yes Alternaria brassicicola   10 9
No Yes Cochliobolus lunatus m118 v2.0   12 10
No Yes Pyrenophora teres f. teres 22   12 11
No Yes Pyrenophora tritici-repentis   12 11
No Yes Stagonospora nodorum   11 10
No Yes Mycosphaerella graminicola IPO323   11 10
No Yes Zasmidium cellare ATCC 36951 v1.0   17 13
No Yes Dothistroma septosporum   11 10
No Yes Septoria musiva v1.0   14 11
No Yes Mycosphaerella fijiensis CIRAD86   11 10
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   9 9
No Yes Paracoccidioides brasiliensis Pb18   13 10
No Yes Coccidioides posadasii RMSCC 3488   13 10
No Yes Coccidioides immitis RS   14 11
No Yes Ajellomyces dermatitidis SLH14081   13 10
No Yes Histoplasma capsulatum class NAmI strain WU24   12 9
No Yes Microsporum canis CBS 113480   14 11
No Yes Trichophyton equinum CBS 127.97   12 9
No Yes Trichophyton verrucosum HKI 0517   9 7
No Yes Arthroderma benhamiae CBS 112371   10 8
No Yes Trichophyton tonsurans CBS 112818   10 8
No Yes Trichophyton rubrum CBS 118892   14 11
No Yes Uncinocarpus reesii 1704   12 9
No Yes Aspergillus zonatus v1.0   12 10
No Yes Penicillium chrysogenum Wisconsin 54-1255   14 11
No Yes Penicillium chrysogenum v1.0   12 10
No Yes Aspergillus acidus v1.0   12 10
No Yes Aspergillus fumigatus Af293   13 9
No Yes Aspergillus brasiliensis v1.0   10 8
No Yes Aspergillus nidulans FGSC A4   12 9
No Yes Aspergillus sydowii v1.0   12 9
No Yes Aspergillus versicolor v1.0   12 9
No Yes Aspergillus glaucus   11 9
No Yes Aspergillus carbonarius ITEM 5010   10 7
No Yes Neosartorya fischeri NRRL 181   15 11
No Yes Aspergillus terreus NIH2624   12 9
No Yes Aspergillus tubingensis v1.0   10 8
No Yes Aspergillus wentii v1.0   12 9
No Yes Aspergillus oryzae RIB40   10 9
No Yes Aspergillus niger 22   12 9
No Yes Aspergillus niger ATCC 1015   9 6
No Yes Aspergillus flavus NRRL3357   16 11
No Yes Aspergillus clavatus NRRL 1   13 9
No Yes Penicillium marneffei ATCC 18224   13 10
No Yes Tuber melanosporum Mel28 22   13 10
No Yes Tuber melanosporum Vittad Perigord truffle 13 10
No Yes Hansenula polymorpha v2.0   12 8
No Yes Dekkera bruxellensis CBS 2499 v2.0   9 7
No Yes Pichia membranifaciensv1.0   12 10
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   11 8
No Yes Candida dubliniensis CD36   11 8
No Yes Candida tropicalis MYA-3404   10 8
No Yes Candida parapsilosis   10 7
No Yes Candida albicans SC5314   10 8
No Yes Lodderomyces elongisporus NRRL YB-4239   8 6
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   11 8
No Yes Pichia stipitis CBS 6054   11 8
No Yes Candida guilliermondii ATCC 6260   10 8
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   11 9
No Yes Debaromyces hansenii   12 8
No Yes Wickerhamomyces anomalus   13 9
No Yes Pichia pastoris GS115   12 8
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   9 7
No Yes Yarrowia lipolytica CLIB122   12 10
No Yes Candida lusitaniae ATCC 42720   13 9
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   13 9
No Yes Vanderwaltozyma polyspora DSM 70294   9 7
No Yes Candida glabrata CBS138   9 7
No Yes Kluyveromyces thermotolerans CBS 6340   8 7
No Yes Lachancea kluyveri   10 7
No Yes Kluyveromyces waltii   8 6
No Yes Ashbya gossypii ATCC 10895   9 7
No Yes Zygosaccharomyces rouxii   8 7
No Yes Saccharomyces mikatae MIT   9 6
No Yes Saccharomyces paradoxus MIT   9 6
No Yes Saccharomyces cerevisiae 76 Baker's yeast 9 6
No Yes Saccharomyces bayanus MIT   10 7
No Yes Kluyveromyces lactis   8 6
No Yes Schizosaccharomyces cryophilus OY26 22   12 8
No Yes Schizosaccharomyces octosporus yFS286   11 8
No Yes Schizosaccharomyces japonicus yFS275   12 8
No Yes Schizosaccharomyces pombe Fission yeast 11 7
No Yes Catenaria anguillulae PL171 v1.0   13 10
No Yes Allomyces macrogynus ATCC 38327   26 23
No Yes Spizellomyces punctatus DAOM BR117   22 16
No Yes Dictyostelium discoideum   18 15
No Yes Dictyostelium purpureum   17 14
No Yes Entamoeba dispar 1.2   10 7
No Yes Entamoeba invadens 1.2   13 8
No Yes Entamoeba histolytica 1   8 5
No Yes Selaginella moellendorffii   71 44
No Yes Pinus taeda Loblolly pine 62 32
No Yes Picea abies Norway spruce 59 28
No Yes Eucalyptus grandis v201 Rose gum 156 86
No Yes Theobroma cacao B97-61/B2 v1 Cacao 95 51
No Yes Gossypium raimondii v221   381 178
No Yes Citrus clementina v165   195 85
No Yes Citrus sinensis v154 Sweet orange 171 99
No Yes Thellungiella halophila v173   138 60
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 182 85
No Yes Capsella rubella v183   119 52
No Yes Arabidopsis lyrata Lyrate rockcress 108 51
No Yes Arabidopsis thaliana 10 Thale cress 142 63
No Yes Carica papaya Papaya 63 36
No Yes Medicago truncatula Barrel medic 182 91
No Yes Phaseolus vulgaris v186 French bean 135 64
No Yes Glycine max v109 Soybean 259 124
No Yes Cucumis sativus v122 Cucumber 129 72
No Yes Fragaria vesca Wild strawberry 75 38
No Yes Malus domestica v196 Apple 192 105
No Yes Prunus persica v139 Peach 103 52
No Yes Linum usitatissimum v200 Flax 153 80
No Yes Manihot esculenta v147 Cassava 153 79
No Yes Populus trichocarpa v156 Black cottonwood 131 63
No Yes Vitis vinifera Wine grape 88 47
No Yes Mimulus guttatus v140 Spotted monkey flower 128 57
No Yes Solanum lycopersicum v.2.3 Tomato 104 53
No Yes Solanum tuberosum Potato 168 85
No Yes Actinidia chinensis Hongyang   137 79
No Yes Aquilegia coerulea v195   182 88
No Yes Triticum urartu 22   63 33
No Yes Triticum aestivum 22 Bread wheat 175 99
No Yes Aegilops tauschii 22   61 34
No Yes Brachypodium distachyon Stiff brome 124 55
No Yes Oryza barthii 22 African wild rice 110 62
No Yes Oryza meridionalis 22   118 62
No Yes Oryza glumaepatula 22   139 74
No Yes Oryza glaberrima African rice 90 43
No Yes Oryza punctata 22   147 78
No Yes Oryza nivara 22   131 67
No Yes Oryza brachyantha 22 Malo sina 89 44
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 159 80
No Yes Oryza sativa v193 Rice 159 80
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 116 69
No Yes Panicum virgatum v202 Switchgrass 191 103
No Yes Setaria italica v164 Foxtail millet 118 65
No Yes Zea mays subsp. mays Maize 247 114
No Yes Zea mays v181 Maize 268 127
No Yes Sorghum bicolor Sorghum 74 45
No Yes Musa balbisiana Balbis banana 123 68
No Yes Musa acuminata 22 Wild Malaysian banana 149 71
No Yes Amborella trichopoda 22   71 36
No Yes Physcomitrella patens   54 31
No Yes Coccomyxa subellipsoidea sp. C-169 v2   18 15
No Yes Asterochloris sp. Cgr/DA1pho v1.0   25 18
No Yes Chlorella variabilis sp. NC64A   32 24
No Yes Chlorella vulgaris   10 9
No Yes Volvox carteri f. nagariensis   24 18
No Yes Volvox carteri v199   18 14
No Yes Chlamydomonas reinhardtii 4.0   24 16
No Yes Ostreococcus sp. RCC809   15 12
No Yes Ostreococcus lucimarinus CCE9901   20 15
No Yes Ostreococcus tauri   16 12
No Yes Bathycoccus prasinos   16 14
No Yes Micromonas sp. RCC299   23 17
No Yes Micromonas pusilla CCMP1545 v3.0   19 17
No Yes Cyanidioschyzon merolae strain 10D 22   9 5
No Yes Cyanidioschyzon merolae   10 6
No Yes Porphyridium purpureum 02_2012   13 10
No Yes Thecamonas trahens ATCC 50062   14 11
No Yes Bigelowiella natans CCMP2755 22   27 20
No Yes Giardia lamblia 2.3   4 3
No Yes Cyanophora paradoxa   27 21
No Yes Leishmania mexicana 2.4   21 20
No Yes Leishmania major strain Friedlin   25 24
No Yes Leishmania infantum JPCM5 2.4   24 23
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   22 21
No Yes Trypanosoma vivax   18 18
No Yes Trypanosoma cruzi strain CL Brener   20 20
No Yes Trypanosoma congolense 2.4   23 23
No Yes Trypanosoma brucei gambiense v4.1   20 20
No Yes Trypanosoma brucei TREU927 v4.1   20 20
No Yes Ectocarpus siliculosus   21 14
No Yes Aureococcus anophagefferens   9 8
No Yes Albugo laibachii 22   31 23
No Yes Pythium iwayamai DAOM BR242034 22   28 22
No Yes Pythium arrhenomanes ATCC 12531 22   33 21
No Yes Pythium ultimum v1.7-2   33 22
No Yes Pythium aphanidermatum DAOM BR444 22   33 20
No Yes Pythium irregulare DAOM BR486 22   35 23
No Yes Pythium vexans DAOM BR484 22   36 23
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 27 18
No Yes Phytophthora sojae 1.1   33 26
No Yes Phytophthora infestans T30-4   36 23
No Yes Phytophthora capsici   30 19
No Yes Hyaloperonospora arabidopsidis 22   32 23
No Yes Phaeodactylum tricornutumCCAP 1055/1   18 12
No Yes Fragilariopsis cylindrus   29 21
No Yes Thalassiosira pseudonana CCMP1335   18 13
No Yes Perkinsus marinus ATCC 50983   163 125
No Yes Paramecium tetraurelia   111 67
No Yes Tetrahymena thermophila SB210 1   48 29
No Yes Ichthyophthirius multifiliis strain G5   24 12
No Yes Cryptosporidium hominis   11 8
No Yes Cryptosporidium muris   16 10
No Yes Cryptosporidium parvum Iowa II   13 9
No Yes Neospora caninum   39 24
No Yes Toxoplasma gondii VEG   39 22
No Yes Toxoplasma gondii ME49   40 22
No Yes Toxoplasma gondii GT1   40 22
No Yes Babesia bovis T2Bo   20 20
No Yes Theileria parva   10 9
No Yes Theileria annulata   10 9
No Yes Plasmodium falciparum 3D7   19 12
No Yes Plasmodium vivax SaI-1 7.0   16 11
No Yes Plasmodium knowlesi strain H   17 11
No Yes Plasmodium yoelii ssp. yoelii 1   12 8
No Yes Plasmodium chabaudi   17 11
No Yes Plasmodium berghei ANKA   17 11
No Yes Symbiodinium minutum clade B1 v1.2   212 144
No Yes Naegleria gruberi   12 9
No Yes Trichomonas vaginalis   11 10
No Yes Guillardia theta CCMP2712 v1.0   30 22
No Yes Emiliania huxleyi CCMP1516   50 44
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 121 74
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 25 22
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 17 14
No Yes Ascaris suum Victoria/Ghent Pig roundworm 36 25
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 51 32
No Yes Cryptococcus neoformans var. grubii H99   15 12
No Yes Cryptococcus neoformans B-3501A   16 12
No Yes Cryptococcus neoformans JEC21   12 11
No Yes Paracoccidioides brasiliensis Pb01   12 9
No Yes Paracoccidioides brasiliensis Pb03   9 8
No Yes Coccidioides posadasii str. Silveira   15 11
No Yes Coccidioides immitis RMSCC 3703   10 8
No Yes Coccidioides immitis RMSCC 2394   13 10
No Yes Coccidioides immitis H538.4   12 9
No Yes Ajellomyces dermatitidis ER-3   13 10
No Yes Histoplasma capsulatum H143   13 10
No Yes Histoplasma capsulatum H88   13 10
No Yes Histoplasma capsulatum G186AR   14 11
No Yes Aspergillus fumigatus A1163   15 11
No Yes Candida albicans WO-1   10 8
No Yes Saccharomyces cerevisiae UC5   9 6
No Yes Saccharomyces cerevisiae PW5   9 6
No Yes Saccharomyces cerevisiae FL100   4 3
No Yes Saccharomyces cerevisiae CLIB324   5 4
No Yes Saccharomyces cerevisiae CBS7960   8 5
No Yes Saccharomyces cerevisiae YJM269   9 6
No Yes Saccharomyces cerevisiae T7   9 6
No Yes Saccharomyces cerevisiae FostersB   8 5
No Yes Saccharomyces cerevisiae FostersO   6 4
No Yes Saccharomyces cerevisiae VL3   7 4
No Yes Saccharomyces cerevisiae Vin13   7 5
No Yes Saccharomyces cerevisiae LalvinQA23   7 4
No Yes Saccharomyces cerevisiae AWRI796   7 5
No Yes Saccharomyces cerevisiae Sigma1278b   9 6
No Yes Saccharomyces cerevisiae W303   9 6
No Yes Saccharomyces cerevisiae JAY291   9 6
No Yes Saccharomyces cerevisiae AWRI1631   5 4
No Yes Saccharomyces cerevisiae YPS163   5 3
No Yes Saccharomyces cerevisiae M22   3 2
No Yes Saccharomyces cerevisiae T73   6 4
No Yes Saccharomyces cerevisiae CLIB215   9 6
No Yes Saccharomyces cerevisiae Y10   4 3
No Yes Saccharomyces cerevisiae YJM789   9 6
No Yes Saccharomyces cerevisiae YJM789   9 6
No Yes Saccharomyces cerevisiae RM11-1a   9 6
No Yes Saccharomyces cerevisiae RM11-1a   9 6
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 9 6
No Yes Schizosaccharomyces pombe 972h-   11 7
No Yes Batrachochytrium dendrobatidis JEL423   17 13
No Yes Batrachochytrium dendrobatidis JAM81   15 11
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 86 47
No Yes Hordeum vulgare 22 Domesticated barley 195 91
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 85 50
No Yes Trypanosoma brucei Lister 427 v4.1   18 18
No Yes Neospora caninum Nc-Liverpool 6.2   39 24
No Yes Plasmodium falciparum HB3   17 11
No Yes Plasmodium falciparum Dd2   14 10
No Yes Homo sapiens 75_37 (old version GRC) Human 156 117
No Yes Homo sapiens (NCBI version) Human 63 43
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 48 32
No Yes Heliconius numata (Incomplete)   10 9
No Yes Loa loa v3.3 (Request) Eye worm 33 23
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 36 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 25 19
No Yes Moniliophthora perniciosa FA553 (Genome survey)   4 4
No Yes Encephalitozoon intestinalis (endoparasite)   8 6
No Yes Encephalitozoon cuniculi (endoparasite)   8 6
No Yes Picea sitchensis (Incomplete) Sitka spruce 7 3
No Yes Lotus japonicus (Early assembly)   83 47
No Yes Malus x domestica (Duplicate) Apple 192 105
No Yes Ricinus communis (Early assembly) Castor bean 77 36
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   187 91
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 101 50
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 104 53
No Yes Phoenix dactylifera (Early draft) Date palm 40 26
No Yes Homo sapiens 69_37 Human 60 43
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 48 31
No Yes Gorilla gorilla 69_3.1 Western gorilla 47 31
No Yes Pongo abelii 69_2 Sumatran orangutan 43 29
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 45 31
No Yes Macaca mulatta 69_1 Rhesus monkey 39 28
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 48 32
No Yes Otolemur garnettii 69_3 Small-eared galago 45 30
No Yes Microcebus murinus 69_1 Gray mouse lemur 25 15
No Yes Rattus norvegicus 69_3.4 Norway rat 54 34
No Yes Mus musculus 69_38 House mouse 48 32
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 29 21
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 27
No Yes Cavia porcellus 69_3 Domestic guinea pig 46 28
No Yes Oryctolagus cuniculus 69_2 Rabbit 40 28
No Yes Ochotona princeps 69 American pika 26 16
No Yes Tupaia belangeri 69 Northern tree shrew 25 19
No Yes Sus scrofa 69_10.2 Pig 45 31
No Yes Bos taurus 69_3.1 Cattle 41 26
No Yes Vicugna pacos 69_1 Alpaca 22 16
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 33 24
No Yes Mustela putorius furo 69_1.0 Domestic ferret 45 29
No Yes Ailuropoda melanoleuca 69_1 Giant panda 42 29
No Yes Canis familiaris 69_3.1 Dog 44 29
No Yes Felis catus 69 Domestic cat 22 19
No Yes Equus caballus 69_2 Horse 32 23
No Yes Myotis lucifugus 69_2.0 Little brown bat 39 28
No Yes Pteropus vampyrus 69_1 Large flying fox 38 24
No Yes Sorex araneus 69_1 European shrew 23 16
No Yes Erinaceus europaeus 69 Western European hedgehog 24 18
No Yes Procavia capensis 69_1 Cape rock hyrax 38 26
No Yes Loxodonta africana 69_3 African savanna elephant 38 25
No Yes Echinops telfairi 69 Small Madagascar hedgehog 20 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 25 16
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 21 15
No Yes Macropus eugenii 69_1.0 Tammar wallaby 25 18
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 30 22
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 39 28
No Yes Ornithorhynchus anatinus 69_5 Platypus 30 22
No Yes Petromyzon marinus 69_7.0 Sea lamprey 13 13
No Yes Meleagris gallopavo 69_2 Turkey 23 18
No Yes Gallus gallus 69_2 Chicken 28 21
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 29 22
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 30 21
No Yes Anolis carolinensis 69_2.0 Green anole 27 20
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 49 29
No Yes Latimeria chalumnae 69_1 Coelacanth 40 28
No Yes Gadus morhua 69_1 Atlantic cod 41 30
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 44 28
No Yes Takifugu rubripes 69_4 Torafugu 44 29
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 43 29
No Yes Oryzias latipes 69_1 Japanese medaka 39 29
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 53 34
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 47 31
No Yes Danio rerio 69_9 Zebrafish 60 41
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 18 14
No Yes Ciona intestinalis 69 Vase tunicate 24 15
No Yes Drosophila melanogaster 69_5 Fruit fly 19 17
No Yes Caenorhabditis elegans 69_215 Roundworm 46 28
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 9 6
No Yes Arabidopsis thaliana 10 Thale cress 98 46
No Yes 7_Oxygen_minimum_layer (meta-genome)   3 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 2
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes NCBI 2017_08 genome   44217 28363
No Yes Protozoadb 2010_08 (Protozoadb)   558 421
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   3235 2172
No Yes Uniprot 2018_03 genome   46149 30350
No Yes Global Ocean Sampling Expedition (GOS)   255 218
No Yes NCBI viral sequences (Viral)   19 19
No Yes PDB chains (SCOP 1.75) (PDB)   7 4
No Yes Protein Data Bank (all PDB sequenc)   90 83
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   101 101
No Yes TargetDB (Targets)   139 102
No Yes UniProt viral sequences (Viral)   44 44

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]