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  Home > Genomes > Caenorhabditis japonica > Spectrin repeat domains


Spectrin repeat superfamily domain assignments
in
Caenorhabditis japonica

Assignment details

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Caenorhabditis japonica has 107 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
CJA00229   0.00000125   61-163   Spectrin repeat  
  0.000352   414-538   Spectrin repeat  
  0.056   962-1034   Spectrin repeat  
CJA03673   0.0000000000318   368-514   Spectrin repeat  
  0.000000038   164-300   Spectrin repeat  
  0.0000202   714-850   Spectrin repeat  
CJA04973   8.77e-34   345-466   Spectrin repeat  
  4.71e-31   1594-1750   Spectrin repeat  
  6.55e-27   1065-1220   Spectrin repeat  
  8.64e-27   1277-1430   Spectrin repeat  
  2.09e-26   1935-2068   Spectrin repeat  
  3.73e-25   1490-1642   Spectrin repeat  
  7.72e-25   657-794   Spectrin repeat  
  2.28e-24   870-1006   Spectrin repeat  
  1.15e-22   476-575   Spectrin repeat  
  2.04e-21   1746-1865   Spectrin repeat  
  1.44e-17   799-902   Spectrin repeat  
  1.24e-16   580-690   Spectrin repeat  
  3.31e-16   1861-1963   Spectrin repeat  
  0.00000000000798   2072-2151   Spectrin repeat  
CJA07083   0.00000504   19-85   Spectrin repeat  
  0.000408   175-312   Spectrin repeat  
CJA07132   3.02e-29   388-507   Spectrin repeat  
  5.62e-29   1659-1810   Spectrin repeat  
  6.54e-29   1764-1920   Spectrin repeat  
  2.76e-28   1446-1600   Spectrin repeat  
  1.2e-26   3251-3403   Spectrin repeat  
  7.86e-26   2826-2979   Spectrin repeat  
  1.9e-23   2081-2236   Spectrin repeat  
  4.08e-23   1881-2024   Spectrin repeat  
  6.05e-23   3467-3620   Spectrin repeat  
  6.28e-23   3152-3297   Spectrin repeat  
  8.23e-20   3043-3177   Spectrin repeat  
  2.88e-19   2561-2663   Spectrin repeat  
  4.2e-19   586-722   Spectrin repeat  
  1.22e-18   793-883   Spectrin repeat  
  8.38e-18   509-620   Spectrin repeat  
  2.62e-17   2449-2565   Spectrin repeat  
  1.2e-16   2621-2750   Spectrin repeat  
  0.00000000000000209   2241-2345   Spectrin repeat  
  0.00000000000000228   1087-1186   Spectrin repeat  
  0.00000000000000288   1234-1359   Spectrin repeat  
  0.0000000000000141   2345-2459   Spectrin repeat  
  0.00000000000846   727-826   Spectrin repeat  
  0.00000000471   3593-3686   Spectrin repeat  
CJA08346   2.75e-32   316-439   Spectrin repeat  
  2.36e-23   554-675   Spectrin repeat  
  3.66e-23   440-549   Spectrin repeat  
  3.45e-17   710-821   Spectrin repeat  
CJA12330   1.38e-29   269-423   Spectrin repeat  
  2.04e-29   1208-1342   Spectrin repeat  
  6.96e-29   817-957   Spectrin repeat  
  5.37e-27   1504-1659   Spectrin repeat  
  7.72e-27   717-850   Spectrin repeat  
  2.49e-26   378-525   Spectrin repeat  
  3.66e-26   1932-2083   Spectrin repeat  
  1.51e-25   1403-1538   Spectrin repeat  
  2.74e-25   1828-1961   Spectrin repeat  
  1.96e-22   533-636   Spectrin repeat  
  8.47e-22   1100-1236   Spectrin repeat  
  1.83e-21   2090-2203   Spectrin repeat  
  1.83e-20   1630-1734   Spectrin repeat  
  5.63e-20   601-714   Spectrin repeat  
  3.67e-18   1734-1835   Spectrin repeat  
  0.00000000000000142   958-1033   Spectrin repeat  
  0.00000000127   22-91   Spectrin repeat  
  0.000000209   127-218   Spectrin repeat  
  0.00000196   2206-2287   Spectrin repeat  
CJA13040   3.53e-35   116-268   Spectrin repeat  
  1.68e-34   749-905   Spectrin repeat  
  3.01e-33   644-797   Spectrin repeat  
  2.03e-32   538-691   Spectrin repeat  
  6.41e-32   221-375   Spectrin repeat  
  1.96e-31   1466-1622   Spectrin repeat  
  3.27e-31   1365-1514   Spectrin repeat  
  1.05e-29   1256-1393   Spectrin repeat  
  2.4e-29   1571-1727   Spectrin repeat  
  3.4e-28   339-477   Spectrin repeat  
  3.53e-28   1895-2049   Spectrin repeat  
  6.67e-28   1170-1293   Spectrin repeat  
  2.43e-26   29-156   Spectrin repeat  
  7.55e-26   1794-1927   Spectrin repeat  
  8.9e-24   2055-2169   Spectrin repeat  
  1.07e-23   1061-1198   Spectrin repeat  
  2.99e-20   909-972,1054-1094   Spectrin repeat  
  1.83e-16   2171-2282   Spectrin repeat  
CJA14369   0.0000000000000249   759-865   Spectrin repeat  
  0.00000000000247   418-526   Spectrin repeat  
  0.000000000785   1112-1209   Spectrin repeat  
  0.0000000563   652-759   Spectrin repeat  
  0.0158   1244-1285   Spectrin repeat  
  0.0388   858-937,993-1025   Spectrin repeat  
CJA14754   0.0000000000000768   209-313   Spectrin repeat  
  0.00000000000216   120-247   Spectrin repeat  
  0.000000245   5-118   Spectrin repeat  
  0.0000104   349-481   Spectrin repeat  
CJA18576   3.02e-20   2454-2604   Spectrin repeat  
  1.44e-18   2340-2501   Spectrin repeat  
  3.1e-18   1463-1623   Spectrin repeat  
  0.00000000000000262   1585-1734   Spectrin repeat  
  0.00000000000000543   2231-2389   Spectrin repeat  
  0.0000000000000158   1684-1841   Spectrin repeat  
  0.0000000000000552   2585-2721   Spectrin repeat  
  0.000000000000461   2017-2170   Spectrin repeat  
  0.000000000000576   715-863   Spectrin repeat  
  0.000000000288   1796-1947   Spectrin repeat  
  0.0000000719   938-1074   Spectrin repeat  
  0.000000288   2753-2852   Spectrin repeat  
  0.000000326   490-639   Spectrin repeat  
  0.000000432   1245-1401   Spectrin repeat  
  0.00000696   49-172   Spectrin repeat  
  0.00216   1139-1238   Spectrin repeat  
  0.0702   649-747   Spectrin repeat  
CJA23850   0.0000888   33-145   Spectrin repeat  
  0.000345   290-414   Spectrin repeat  
  0.000843   397-539   Spectrin repeat  
  0.0475   720-820   Spectrin repeat  
 
Weak hits:
CJA00127   0.0216   240-288   Spectrin repeat  
CJA01422   0.000768   35-93   Spectrin repeat  
CJA05236   0.0604   99-144   Spectrin repeat  
CJA05237   0.0206   187-277   Spectrin repeat  
CJA06669   0.0317   276-341   Spectrin repeat  
CJA07678   0.046   206-270   Spectrin repeat  
CJA09176   0.0158   108-152   Spectrin repeat  
CJA10241   0.0117   77-121   Spectrin repeat  
CJA10617   0.0136   47-110   Spectrin repeat  
CJA11606   0.0163   7-86   Spectrin repeat  
CJA15148   0.0671   22-63   Spectrin repeat  
CJA17831   0.0368   106-154   Spectrin repeat  
CJA18132   0.0921   646-716   Spectrin repeat  
CJA21713   0.00368   468-579   Spectrin repeat  
CJA22916   0.0201   19-54   Spectrin repeat  
CJA23141   0.0302   21-68   Spectrin repeat  
CJA26488   0.0863   112-194   Spectrin repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   649625 649625
No Yes Homo sapiens 76_38 Human 1347 188
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 76_3.1 Western gorilla 483 54
No Yes Pongo abelii 76_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 266 33
No Yes Papio anubis 76 Olive baboon 276 35
No Yes Macaca mulatta 76_1 Rhesus monkey 743 89
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 834 100
No Yes Otolemur garnettii 76_3 Small-eared galago 324 37
No Yes Microcebus murinus 76_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 76_5.0 Norway rat 406 50
No Yes Mus musculus 76_38 House mouse 985 134
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 300 39
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 310 37
No Yes Cavia porcellus 76_3 Domestic guinea pig 324 38
No Yes Oryctolagus cuniculus 76_2 Rabbit 301 38
No Yes Ochotona princeps 76 American pika 249 27
No Yes Tupaia belangeri 76 Northern tree shrew 240 28
No Yes Sus scrofa 76_10.2 Pig 279 49
No Yes Bos taurus 76_3.1 Cattle 335 37
No Yes Ovis aries 76_3.1 Sheep 309 40
No Yes Vicugna pacos 76_1 Alpaca 190 20
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 76_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 76_1 Giant panda 448 46
No Yes Canis familiaris 76_3.1 Dog 503 57
No Yes Felis catus 76_6.2 Domestic cat 320 52
No Yes Equus caballus 76_2 Horse 738 71
No Yes Myotis lucifugus 76_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 76_1 Large flying fox 289 32
No Yes Sorex araneus 76_1 European shrew 190 23
No Yes Erinaceus europaeus 76 Western European hedgehog 184 20
No Yes Procavia capensis 76_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 76_3 African savanna elephant 421 53
No Yes Echinops telfairi 76 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 391 58
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 76_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 355 47
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 360 39
No Yes Ornithorhynchus anatinus 76_5 Platypus 341 71
No Yes Saccoglossus kowalevskii v3.0   2079 67
No Yes Petromyzon marinus 76_7.0 Sea lamprey 172 32
No Yes Meleagris gallopavo 76_2 Turkey 299 37
No Yes Gallus gallus 76_4 Chicken 332 35
No Yes Anas platyrhynchos 76_1.0 Mallard 292 36
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 264 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 291 32
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 266 39
No Yes Anolis carolinensis 76_2.0 Green anole 299 35
No Yes Xenopus laevis African clawed frog 101 33
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 313 41
No Yes Latimeria chalumnae 76_1 Coelacanth 352 47
No Yes Lepisosteus oculatus 76 Spotted gar 489 49
No Yes Gadus morhua 76_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 397 56
No Yes Takifugu rubripes 76_4 Torafugu 1586 184
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 453 55
No Yes Oryzias latipes 76_1 Japanese medaka 351 49
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 349 45
No Yes Poecilia formosa 76 Amazon molly 366 42
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 456 53
No Yes Astyanax mexicanus 76 Mexican tetra 398 58
No Yes Danio rerio 76_9 Zebrafish 590 93
No Yes Oikopleura dioica   51 13
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 180 28
No Yes Ciona intestinalis 76 Vase tunicate 69 11
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 287 42
No Yes Adineta vaga   157 43
No Yes Octopus bimaculoides 280   368 41
No Yes Crassostrea gigas 22 Pacific oyster 185 21
No Yes Lottia gigantea Owl limpet 185 16
No Yes Helobdella robusta   96 16
No Yes Capitella sp. I   182 19
No Yes Danaus plexippus OGS1.0 Monarch butterfly 151 21
No Yes Heliconius melpomene Postman butterfly 125 15
No Yes Bombyx mori Domestic silkworm 132 44
No Yes Nasonia vitripennis Jewel wasp 131 8
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 389 45
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 159 18
No Yes Linepithema humile v1.1 Argentine ant 150 23
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 157 24
No Yes Solenopsis invicta v.2.2.3 Red fire ant 131 22
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 153 13
No Yes Atta cephalotes v1.1   153 20
No Yes Camponotus floridanus v3.3 Florida carpenter ant 172 16
No Yes Lucilia cuprina Australian sheep blowfly 149 15
No Yes Drosophila grimshawi 1.3   161 14
No Yes Drosophila willistoni 1.3   160 13
No Yes Drosophila pseudoobscura 2.13   152 13
No Yes Drosophila persimilis 1.3   114 19
No Yes Drosophila suzukii   150 12
No Yes Drosophila yakuba 1.3   160 12
No Yes Drosophila simulans 1.3   80 16
No Yes Drosophila sechellia 1.3   140 14
No Yes Drosophila melanogaster 76_5 Fruit fly 1379 76
No Yes Drosophila erecta 1.3   158 12
No Yes Drosophila ananassae 1.3   157 11
No Yes Drosophila virilis 1.2   125 14
No Yes Drosophila mojavensis 1.3   158 15
No Yes Megaselia scalaris 22   92 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 129 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 120 18
No Yes Anopheles darlingi 22 American malaria mosquito 91 11
No Yes Anopheles gambiae 49_3j African malaria mosquito 140 11
No Yes Tribolium castaneum 3.0 Red flour beetle 158 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 163 16
No Yes Acyrthosiphon pisum Pea aphid 147 16
No Yes Rhodnius prolixus 22   130 18
No Yes Daphnia pulex Common water flea 197 26
No Yes Strigamia maritima 22   161 13
No Yes Sarcoptes scabiei   112 9
No Yes Tetranychus urticae Two-spotted spider mite 91 23
No Yes Ixodes scapularis (Preliminary) Black-legged tick 56 11
No Yes Pristionchus pacificus   91 24
No Yes Meloidogyne incognita Southern root-knot nematode 48 12
No Yes Meloidogyne hapla   33 8
No Yes Onchocerca volvulus 22   100 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 149 17
No Yes Caenorhabditis japonica   107 12
No Yes Caenorhabditis brenneri   135 19
No Yes Caenorhabditis remanei   99 19
No Yes Caenorhabditis elegans 76_235 Roundworm 328 33
No Yes Caenorhabditis briggsae 2   91 11
No Yes Trichinella spiralis 22   102 13
No Yes Hymenolepis microstoma   93 13
No Yes Echinococcus multilocularis   94 14
No Yes Echinococcus granulosus   98 12
No Yes Taenia solium Pork tapeworm 84 16
No Yes Schistosoma mansoni   105 22
No Yes Mnemiopsis leidyi Sea walnut 61 15
No Yes Thelohanellus kitauei   3 1
No Yes Acropora digitifera v1.0   185 47
No Yes Nematostella vectensis 1.0 Starlet sea anemone 134 26
No Yes Hydra vulgaris   81 17
No Yes Amphimedon queenslandica   94 17
No Yes Trichoplax adhaerens   135 14
No Yes Proterospongia sp. ATCC 50818   79 12
No Yes Monosiga brevicollis   52 9
No Yes Sphaeroforma arctica JP610   4 1
No Yes Capsaspora owczarzaki ATCC 30864   20 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   3 2
No Yes Mortierella verticillata NRRL 6337   2 1
No Yes Phycomyces blakesleeanus   2 1
No Yes Rhizopus oryzae RA 99-880   6 4
No Yes Mucor circinelloides   4 2
No Yes Rhizomucor miehei CAU432   8 5
No Yes Sporisorium reilianum 22   2 1
No Yes Ustilago maydis   2 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   4 3
No Yes Piloderma croceum F 1598 v1.0   3 2
No Yes Serpula lacrymans var. lacrymans S7.9   2 1
No Yes Coniophora puteana   2 1
No Yes Hydnomerulius pinastri v2.0   2 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 1
No Yes Pisolithus microcarpus 441 v1.0   2 1
No Yes Pisolithus tinctorius Marx 270 v1.0   2 1
No Yes Scleroderma citrinum Foug A v1.0   3 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 1
No Yes Pleurotus ostreatus Oyster mushroom 2 1
No Yes Amanita thiersii Skay4041 v1.0   2 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 1
No Yes Galerina marginata v1.0   2 1
No Yes Hebeloma cylindrosporum h7 v2.0   2 1
No Yes Laccaria bicolor S238N-H82   2 1
No Yes Agaricus bisporus var. bisporus   3 2
No Yes Schizophyllum commune   2 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 1
No Yes Heterobasidion annosum   2 1
No Yes Gloeophyllum trabeumv1.0   2 1
No Yes Punctularia strigosozonata v1.0   2 1
No Yes Sebacina vermifera MAFF 305830 v1.0   2 1
No Yes Fomitiporia mediterranea v1.0   2 1
No Yes Tulasnella calospora AL13/4D v1.0   4 3
No Yes Postia placenta   3 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 1
No Yes Fomitopsis pinicolav1.0   2 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 1
No Yes Phanerochaete chrysosporium RP-78 2.1   2 1
No Yes Dichomitus squalens   2 1
No Yes Trametes versicolor v1.0   2 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 1
No Yes Magnaporthe poae ATCC 64411 22   2 1
No Yes Magnaporthe grisea 70-15   3 2
No Yes Podospora anserina   2 1
No Yes Sporotrichum thermophile ATCC 42464   3 2
No Yes Thielavia terrestris NRRL 8126   2 1
No Yes Chaetomium globosum CBS 148.51   2 1
No Yes Neurospora tetrasperma   2 1
No Yes Neurospora discreta FGSC 8579   2 1
No Yes Neurospora crassa OR74A   2 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 1
No Yes Verticillium albo-atrum VaMs.102   2 1
No Yes Verticillium dahliae VdLs.17   2 1
No Yes Acremonium alcalophilumv 1.0   2 1
No Yes Glomerella graminicola 22   2 1
No Yes Fusarium graminearum   3 2
No Yes Nectria haematococca mpVI   2 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 2
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 1
No Yes Trichoderma atroviride   2 1
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   3 2
No Yes Trichoderma virens Gv29-8   2 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 1
No Yes Botrytis cinerea B05.10   3 2
No Yes Sclerotinia sclerotiorum   2 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   2 1
No Yes Leptosphaeria maculans 22   2 1
No Yes Setosphaeria turcica v1.0   2 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 1
No Yes Cochliobolus victoriae FI3 v1.0   2 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 3 2
No Yes Alternaria brassicicola   2 1
No Yes Cochliobolus lunatus m118 v2.0   2 1
No Yes Pyrenophora teres f. teres 22   2 1
No Yes Pyrenophora tritici-repentis   2 1
No Yes Stagonospora nodorum   2 1
No Yes Mycosphaerella graminicola IPO323   2 1
No Yes Zasmidium cellare ATCC 36951 v1.0   4 3
No Yes Dothistroma septosporum   3 2
No Yes Septoria musiva v1.0   2 1
No Yes Mycosphaerella fijiensis CIRAD86   2 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 1
No Yes Paracoccidioides brasiliensis Pb18   2 1
No Yes Coccidioides posadasii RMSCC 3488   2 1
No Yes Coccidioides immitis RS   2 1
No Yes Ajellomyces dermatitidis SLH14081   2 1
No Yes Histoplasma capsulatum class NAmI strain WU24   2 1
No Yes Microsporum canis CBS 113480   2 1
No Yes Trichophyton equinum CBS 127.97   2 1
No Yes Trichophyton verrucosum HKI 0517   2 1
No Yes Arthroderma benhamiae CBS 112371   2 1
No Yes Trichophyton tonsurans CBS 112818   2 1
No Yes Trichophyton rubrum CBS 118892   2 1
No Yes Uncinocarpus reesii 1704   2 1
No Yes Aspergillus zonatus v1.0   2 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 1
No Yes Penicillium chrysogenum v1.0   2 1
No Yes Aspergillus acidus v1.0   2 1
No Yes Aspergillus fumigatus Af293   2 1
No Yes Aspergillus brasiliensis v1.0   2 1
No Yes Aspergillus nidulans FGSC A4   2 1
No Yes Aspergillus sydowii v1.0   2 1
No Yes Aspergillus versicolor v1.0   2 1
No Yes Aspergillus glaucus   2 1
No Yes Aspergillus carbonarius ITEM 5010   2 1
No Yes Neosartorya fischeri NRRL 181   2 1
No Yes Aspergillus terreus NIH2624   2 1
No Yes Aspergillus tubingensis v1.0   2 1
No Yes Aspergillus wentii v1.0   2 1
No Yes Aspergillus oryzae RIB40   2 1
No Yes Aspergillus niger 22   2 1
No Yes Aspergillus niger ATCC 1015   2 1
No Yes Aspergillus flavus NRRL3357   2 1
No Yes Aspergillus clavatus NRRL 1   2 1
No Yes Penicillium marneffei ATCC 18224   2 1
No Yes Tuber melanosporum Mel28 22   2 1
No Yes Tuber melanosporum Vittad Perigord truffle 2 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Yarrowia lipolytica CLIB122   2 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 3
No Yes Spizellomyces punctatus DAOM BR117   2 1
No Yes Dictyostelium discoideum   4 1
No Yes Dictyostelium purpureum   4 1
No Yes Entamoeba dispar 1.2   3 3
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   2 1
No Yes Capsella rubella v183   1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   6 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Trypanosoma vivax   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   2 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   2 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Perkinsus marinus ATCC 50983   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Naegleria gruberi   3 2
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Thermosipho africanus TCF52B   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 285 54
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 914 52
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 193 16
No Yes Ascaris suum Victoria/Ghent Pig roundworm 98 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 240 26
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   2 1
No Yes Coccidioides posadasii str. Silveira   2 1
No Yes Coccidioides immitis RMSCC 3703   2 1
No Yes Coccidioides immitis RMSCC 2394   2 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   2 1
No Yes Histoplasma capsulatum H143   2 1
No Yes Histoplasma capsulatum H88   2 1
No Yes Histoplasma capsulatum G186AR   2 1
No Yes Aspergillus fumigatus A1163   2 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   2 1
No Yes Batrachochytrium dendrobatidis JAM81   2 1
No Yes Thermus thermophilus HB8   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Coprococcus catus GD/7   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   3 3
No Yes Shigella dysenteriae 1617   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1579 208
No Yes Homo sapiens (NCBI version) Human 646 76
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 307 33
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 109 13
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 106 42
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 97 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Homo sapiens 69_37 Human 400 38
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 69_3.1 Western gorilla 282 36
No Yes Pongo abelii 69_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 245 32
No Yes Macaca mulatta 69_1 Rhesus monkey 304 35
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 33
No Yes Otolemur garnettii 69_3 Small-eared galago 312 34
No Yes Microcebus murinus 69_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 69_3.4 Norway rat 297 34
No Yes Mus musculus 69_38 House mouse 266 34
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 288 33
No Yes Cavia porcellus 69_3 Domestic guinea pig 309 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 39
No Yes Ochotona princeps 69 American pika 249 27
No Yes Tupaia belangeri 69 Northern tree shrew 240 28
No Yes Sus scrofa 69_10.2 Pig 232 39
No Yes Bos taurus 69_3.1 Cattle 304 34
No Yes Vicugna pacos 69_1 Alpaca 190 20
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 69_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 69_1 Giant panda 309 36
No Yes Canis familiaris 69_3.1 Dog 316 35
No Yes Felis catus 69 Domestic cat 181 28
No Yes Equus caballus 69_2 Horse 323 35
No Yes Myotis lucifugus 69_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 69_1 Large flying fox 289 32
No Yes Sorex araneus 69_1 European shrew 190 23
No Yes Erinaceus europaeus 69 Western European hedgehog 184 20
No Yes Procavia capensis 69_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 69_3 African savanna elephant 262 34
No Yes Echinops telfairi 69 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 205 25
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 69_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 250 34
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 325 34
No Yes Ornithorhynchus anatinus 69_5 Platypus 306 66
No Yes Petromyzon marinus 69_7.0 Sea lamprey 157 28
No Yes Meleagris gallopavo 69_2 Turkey 262 28
No Yes Gallus gallus 69_2 Chicken 284 29
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 257 33
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 233 33
No Yes Anolis carolinensis 69_2.0 Green anole 291 39
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 289 33
No Yes Latimeria chalumnae 69_1 Coelacanth 273 37
No Yes Gadus morhua 69_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 300 41
No Yes Takifugu rubripes 69_4 Torafugu 381 43
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 372 42
No Yes Oryzias latipes 69_1 Japanese medaka 317 38
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 349 45
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 373 40
No Yes Danio rerio 69_9 Zebrafish 340 50
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 24 7
No Yes Ciona intestinalis 69 Vase tunicate 65 10
No Yes Drosophila melanogaster 69_5 Fruit fly 124 10
No Yes Caenorhabditis elegans 69_215 Roundworm 103 11
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   3 3
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   5 5
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   387404 34306
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   5 5
No Yes Protozoadb 2010_08 (Protozoadb)   14 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10877 1400
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   159518 21102
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   39 34
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   22 11
No Yes Protein Data Bank (all PDB sequenc)   131 69
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   213 213
No Yes TargetDB (Targets)   200 79
No Yes UniProt viral sequences (Viral)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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