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  Home > Genomes > Takifugu rubripes 76_4 > Sema domain domains


Sema domain superfamily domain assignments
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Takifugu rubripes 76_4

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Takifugu rubripes 76_4 has 225 significant domains in 225 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTRUP00000001178   9.94e-96   6-427   Sema domain  
ENSTRUP00000002824   4.05e-146   68-527   Sema domain  
ENSTRUP00000002825   3.53e-146   68-527   Sema domain  
ENSTRUP00000002826   2.88e-146   65-524   Sema domain  
ENSTRUP00000002827   3.01e-128   65-483   Sema domain  
ENSTRUP00000002828   1.12e-145   58-517   Sema domain  
ENSTRUP00000002829   9.94e-146   58-517   Sema domain  
ENSTRUP00000002830   1.11e-145   57-516   Sema domain  
ENSTRUP00000002831   4.97e-146   55-514   Sema domain  
ENSTRUP00000002832   3.53e-105   53-361   Sema domain  
ENSTRUP00000002833   1.07e-145   36-495   Sema domain  
ENSTRUP00000002971   1.23e-54   21-204   Sema domain  
ENSTRUP00000005191   2.22e-128   39-510   Sema domain  
ENSTRUP00000005192   2.22e-128   45-516   Sema domain  
ENSTRUP00000005193   2.22e-128   56-527   Sema domain  
ENSTRUP00000005359   1.31e-86   6-356   Sema domain  
ENSTRUP00000005360   6.02e-90   6-351   Sema domain  
ENSTRUP00000005361   4.45e-87   5-355   Sema domain  
ENSTRUP00000008384   1.44e-130   29-493   Sema domain  
ENSTRUP00000008385   1.44e-130   29-493   Sema domain  
ENSTRUP00000008386   1.7e-130   8-471   Sema domain  
ENSTRUP00000008387   1.44e-130   43-507   Sema domain  
ENSTRUP00000008388   1.57e-130   38-502   Sema domain  
ENSTRUP00000008389   9.16e-131   3-468   Sema domain  
ENSTRUP00000008680   3.53e-142   55-513   Sema domain  
ENSTRUP00000008681   2.09e-142   61-519   Sema domain  
ENSTRUP00000008682   2.35e-142   56-514   Sema domain  
ENSTRUP00000008683   2.62e-142   56-514   Sema domain  
ENSTRUP00000008684   1.44e-142   62-520   Sema domain  
ENSTRUP00000008685   4.19e-142   65-526   Sema domain  
ENSTRUP00000008686   1.07e-142   56-514   Sema domain  
ENSTRUP00000008864   3.79e-116   34-481   Sema domain  
ENSTRUP00000008865   2.75e-118   28-473   Sema domain  
ENSTRUP00000008866   3.27e-118   29-474   Sema domain  
ENSTRUP00000008867   3.92e-117   28-466   Sema domain  
ENSTRUP00000008868   2.75e-118   26-471   Sema domain  
ENSTRUP00000008869   2.62e-118   26-471   Sema domain  
ENSTRUP00000008870   2.75e-118   7-452   Sema domain  
ENSTRUP00000008871   5.49e-117   3-441   Sema domain  
ENSTRUP00000008872   1.27e-112   5-432   Sema domain  
ENSTRUP00000008873   2.62e-112   5-433   Sema domain  
ENSTRUP00000010954   4.58e-136   9-456   Sema domain  
ENSTRUP00000010955   9.03e-136   9-461   Sema domain  
ENSTRUP00000010956   5.76e-137   8-451   Sema domain  
ENSTRUP00000011172   3.4e-110   29-474   Sema domain  
ENSTRUP00000011855   5.36e-152   6-460   Sema domain  
ENSTRUP00000011856   5.36e-151   2-449   Sema domain  
ENSTRUP00000011857   7.98e-151   1-448   Sema domain  
ENSTRUP00000011858   1.7e-134   2-391   Sema domain  
ENSTRUP00000011859   5.62e-150   1-444   Sema domain  
ENSTRUP00000011860   3.27e-151   1-448   Sema domain  
ENSTRUP00000012328   6.8e-146   48-515   Sema domain  
ENSTRUP00000015902   1.31e-153   33-505   Sema domain  
ENSTRUP00000015903   3.14e-152   32-505   Sema domain  
ENSTRUP00000016001   2.09e-159   55-528   Sema domain  
ENSTRUP00000016002   1.31e-159   36-513   Sema domain  
ENSTRUP00000016003   1.96e-158   2-467   Sema domain  
ENSTRUP00000016133   4.84e-168   30-522   Sema domain  
ENSTRUP00000016134   1.44e-166   32-523   Sema domain  
ENSTRUP00000016135   2.88e-162   32-154,186-555   Sema domain  
ENSTRUP00000016136   4.45e-166   36-529   Sema domain  
ENSTRUP00000016137   2.09e-161   34-156,195-564   Sema domain  
ENSTRUP00000016138   5.49e-168   6-498   Sema domain  
ENSTRUP00000016139   1.83e-167   2-491   Sema domain  
ENSTRUP00000016140   1.31e-167   2-491   Sema domain  
ENSTRUP00000016141   1.44e-163   3-467   Sema domain  
ENSTRUP00000016428   4.45e-153   30-495   Sema domain  
ENSTRUP00000017383   0.0000262   9-55   Sema domain  
ENSTRUP00000017384   0.0000262   9-55   Sema domain  
ENSTRUP00000017385   0.0000235   9-55   Sema domain  
ENSTRUP00000017386   0.0000235   9-55   Sema domain  
ENSTRUP00000017387   0.0000235   9-55   Sema domain  
ENSTRUP00000018918   1.7e-165   1-463   Sema domain  
ENSTRUP00000018919   3.92e-170   22-497   Sema domain  
ENSTRUP00000018920   1.12e-167   15-488   Sema domain  
ENSTRUP00000018921   8.76e-167   21-494   Sema domain  
ENSTRUP00000018922   6.15e-168   17-494   Sema domain  
ENSTRUP00000018923   1.05e-167   17-494   Sema domain  
ENSTRUP00000018924   4.05e-169   21-500   Sema domain  
ENSTRUP00000018925   3.27e-166   1-464   Sema domain  
ENSTRUP00000018926   1.03e-169   22-496   Sema domain  
ENSTRUP00000018927   1.57e-167   26-503   Sema domain  
ENSTRUP00000020935   1.19e-137   1-442   Sema domain  
ENSTRUP00000021860   8.5e-104   20-465   Sema domain  
ENSTRUP00000021861   8.37e-104   20-465   Sema domain  
ENSTRUP00000021862   9.42e-74   33-487   Sema domain  
ENSTRUP00000021863   1.06e-108   1-448   Sema domain  
ENSTRUP00000021864   0.00000000000000615   9-107   Sema domain  
ENSTRUP00000021865   0.00000000000000615   9-107   Sema domain  
ENSTRUP00000021866   9.16e-110   41-499   Sema domain  
ENSTRUP00000021867   1.7e-108   1-455   Sema domain  
ENSTRUP00000023637   0.00000000000863   7-88   Sema domain  
ENSTRUP00000023638   0.0000000000085   7-88   Sema domain  
ENSTRUP00000025237   6.93e-118   35-503   Sema domain  
ENSTRUP00000025238   7.19e-118   43-511   Sema domain  
ENSTRUP00000025239   6.41e-116   40-501   Sema domain  
ENSTRUP00000025240   3.53e-118   40-511   Sema domain  
ENSTRUP00000025241   6.8e-123   38-504   Sema domain  
ENSTRUP00000025242   6.67e-123   38-504   Sema domain  
ENSTRUP00000025243   7.06e-118   38-506   Sema domain  
ENSTRUP00000025244   6.8e-118   38-506   Sema domain  
ENSTRUP00000025245   1.06e-120   6-477   Sema domain  
ENSTRUP00000025246   1.44e-120   5-466   Sema domain  
ENSTRUP00000025342   3.66e-140   6-455   Sema domain  
ENSTRUP00000025343   3.53e-140   6-455   Sema domain  
ENSTRUP00000025344   3.4e-140   6-455   Sema domain  
ENSTRUP00000025345   1.1e-140   5-455   Sema domain  
ENSTRUP00000027036   3.53e-103   52-535   Sema domain  
ENSTRUP00000027037   2.62e-101   7-467   Sema domain  
ENSTRUP00000027038   6.93e-103   29-514   Sema domain  
ENSTRUP00000027039   2.22e-100   29-515   Sema domain  
ENSTRUP00000027040   7.72e-95   2-439   Sema domain  
ENSTRUP00000027041   6.67e-97   1-476   Sema domain  
ENSTRUP00000027042   1.31e-91   2-449   Sema domain  
ENSTRUP00000027043   5.23e-104   29-514   Sema domain  
ENSTRUP00000027276   1.27e-168   30-500   Sema domain  
ENSTRUP00000027552   8.24e-165   38-515   Sema domain  
ENSTRUP00000027768   1.7e-179   29-516   Sema domain  
ENSTRUP00000027769   3.79e-179   13-504   Sema domain  
ENSTRUP00000027770   2.09e-179   34-515   Sema domain  
ENSTRUP00000027771   2.09e-173   5-123,153-518   Sema domain  
ENSTRUP00000031475   1.02e-144   39-495   Sema domain  
ENSTRUP00000031476   3.14e-144   42-500   Sema domain  
ENSTRUP00000031477   6.67e-140   1-434   Sema domain  
ENSTRUP00000032483   6.02e-130   36-502   Sema domain  
ENSTRUP00000032484   2.49e-127   38-509   Sema domain  
ENSTRUP00000032485   2.49e-127   39-510   Sema domain  
ENSTRUP00000032486   9.16e-129   29-500   Sema domain  
ENSTRUP00000032487   8.24e-127   3-470   Sema domain  
ENSTRUP00000032955   4.45e-122   39-505   Sema domain  
ENSTRUP00000032956   3.92e-121   22-489   Sema domain  
ENSTRUP00000032957   5.1e-122   42-510   Sema domain  
ENSTRUP00000032958   6.54e-96   25-467   Sema domain  
ENSTRUP00000032959   0.0000706   2-35   Sema domain  
ENSTRUP00000032961   6.15e-112   25-470   Sema domain  
ENSTRUP00000034641   2.35e-100   1-364   Sema domain  
ENSTRUP00000035619   6.28e-162   24-516   Sema domain  
ENSTRUP00000035729   1.57e-128   39-507   Sema domain  
ENSTRUP00000035730   9.55e-127   23-495   Sema domain  
ENSTRUP00000035731   8.11e-125   18-493   Sema domain  
ENSTRUP00000035732   1.44e-128   18-486   Sema domain  
ENSTRUP00000035733   7.98e-117   13-483   Sema domain  
ENSTRUP00000035734   1.07e-123   11-471   Sema domain  
ENSTRUP00000035735   5.62e-125   11-491   Sema domain  
ENSTRUP00000035736   4.32e-121   9-481   Sema domain  
ENSTRUP00000035737   2.75e-126   6-469   Sema domain  
ENSTRUP00000035738   1.14e-118   1-431   Sema domain  
ENSTRUP00000035790   1.83e-184   3-482   Sema domain  
ENSTRUP00000035791   1.83e-186   31-521   Sema domain  
ENSTRUP00000035792   6.15e-187   31-522   Sema domain  
ENSTRUP00000035793   5.23e-95   1-270   Sema domain  
ENSTRUP00000035930   1.57e-158   15-477   Sema domain  
ENSTRUP00000035931   3.66e-161   2-456   Sema domain  
ENSTRUP00000035932   3.53e-161   2-456   Sema domain  
ENSTRUP00000035933   1.96e-160   2-451   Sema domain  
ENSTRUP00000036212   2.22e-175   44-537   Sema domain  
ENSTRUP00000036241   1.96e-141   4-455   Sema domain  
ENSTRUP00000036411   1.06e-176   5-483   Sema domain  
ENSTRUP00000036412   8.63e-175   2-465   Sema domain  
ENSTRUP00000036413   1.15e-171   6-123,154-519   Sema domain  
ENSTRUP00000036414   5.49e-177   6-489   Sema domain  
ENSTRUP00000036415   1.03e-163   2-454   Sema domain  
ENSTRUP00000036416   1.26e-102   1-281   Sema domain  
ENSTRUP00000037306   1.09e-108   5-453   Sema domain  
ENSTRUP00000037307   8.11e-106   24-462   Sema domain  
ENSTRUP00000037308   7.59e-110   21-478   Sema domain  
ENSTRUP00000037309   4.97e-106   4-468   Sema domain  
ENSTRUP00000037310   6.8e-105   4-473   Sema domain  
ENSTRUP00000037311   9.94e-110   4-461   Sema domain  
ENSTRUP00000037312   4.45e-111   3-450   Sema domain  
ENSTRUP00000037313   4.58e-111   3-449   Sema domain  
ENSTRUP00000037314   6.8e-111   2-446   Sema domain  
ENSTRUP00000037315   1.31e-106   1-456   Sema domain  
ENSTRUP00000038182   4.97e-189   26-518   Sema domain  
ENSTRUP00000038183   3.79e-189   26-518   Sema domain  
ENSTRUP00000040068   4.05e-39   4-211   Sema domain  
ENSTRUP00000040330   1.31e-174   7-485   Sema domain  
ENSTRUP00000040331   1.44e-169   29-153,185-552   Sema domain  
ENSTRUP00000040332   4.71e-170   3-127,154-521   Sema domain  
ENSTRUP00000040795   1.44e-164   3-117,147-513   Sema domain  
ENSTRUP00000040796   2.62e-164   3-117,149-515   Sema domain  
ENSTRUP00000040797   2.62e-169   3-483   Sema domain  
ENSTRUP00000040798   6.54e-163   5-106,141-507   Sema domain  
ENSTRUP00000040799   3.01e-167   1-464   Sema domain  
ENSTRUP00000040800   6.8e-168   1-465   Sema domain  
ENSTRUP00000041080   8.37e-127   28-499   Sema domain  
ENSTRUP00000041081   8.5e-127   52-523   Sema domain  
ENSTRUP00000041082   8.5e-127   45-516   Sema domain  
ENSTRUP00000041083   1.83e-123   2-470   Sema domain  
ENSTRUP00000042444   7.19e-101   27-457   Sema domain  
ENSTRUP00000042445   1.44e-106   3-463   Sema domain  
ENSTRUP00000042446   1.14e-104   2-435   Sema domain  
ENSTRUP00000042447   3.53e-105   2-442   Sema domain  
ENSTRUP00000042448   2.62e-106   1-453   Sema domain  
ENSTRUP00000042449   1.07e-99   1-430   Sema domain  
ENSTRUP00000042450   1.96e-104   1-448   Sema domain  
ENSTRUP00000042451   1.16e-19   1-103   Sema domain  
ENSTRUP00000042452   1.16e-19   1-103   Sema domain  
ENSTRUP00000042897   1.57e-149   56-520   Sema domain  
ENSTRUP00000042898   1.7e-149   53-517   Sema domain  
ENSTRUP00000042899   1.7e-149   53-517   Sema domain  
ENSTRUP00000042900   1.57e-149   53-517   Sema domain  
ENSTRUP00000042901   1.57e-149   53-517   Sema domain  
ENSTRUP00000042902   1.44e-149   53-517   Sema domain  
ENSTRUP00000042903   0.00000235   1-62   Sema domain  
ENSTRUP00000042904   6.02e-150   53-517   Sema domain  
ENSTRUP00000042905   3.53e-150   53-517   Sema domain  
ENSTRUP00000043473   4.32e-150   51-519   Sema domain  
ENSTRUP00000043474   4.97e-150   52-520   Sema domain  
ENSTRUP00000043475   4.32e-150   52-520   Sema domain  
ENSTRUP00000043477   4.05e-150   47-515   Sema domain  
ENSTRUP00000043478   3.53e-150   52-520   Sema domain  
ENSTRUP00000043854   2.49e-107   41-523   Sema domain  
ENSTRUP00000043855   4.71e-107   41-529   Sema domain  
ENSTRUP00000043856   4.97e-107   41-525   Sema domain  
ENSTRUP00000043857   2.49e-107   41-523   Sema domain  
ENSTRUP00000043858   4.58e-107   41-529   Sema domain  
ENSTRUP00000043859   7.59e-106   41-527   Sema domain  
ENSTRUP00000043860   6.54e-110   40-526   Sema domain  
ENSTRUP00000043861   1.83e-107   39-524   Sema domain  
ENSTRUP00000043862   8.89e-107   39-521   Sema domain  
ENSTRUP00000043863   6.54e-109   39-524   Sema domain  
ENSTRUP00000046823   5.36e-154   34-497   Sema domain  
ENSTRUP00000046824   5.36e-154   36-499   Sema domain  
ENSTRUP00000046825   1.31e-152   2-460   Sema domain  
 
Weak hits:
ENSTRUP00000017388   0.000392   3-39   Sema domain  
ENSTRUP00000017389   0.00196   2-35   Sema domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   39331 39331
No Yes Homo sapiens 76_38 Human 138 138
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 27 27
No Yes Gorilla gorilla 76_3.1 Western gorilla 43 43
No Yes Pongo abelii 76_2 Sumatran orangutan 33 33
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 34 34
No Yes Papio anubis 76 Olive baboon 37 36
No Yes Macaca mulatta 76_1 Rhesus monkey 56 56
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 78 78
No Yes Otolemur garnettii 76_3 Small-eared galago 29 29
No Yes Microcebus murinus 76_1 Gray mouse lemur 34 26
No Yes Rattus norvegicus 76_5.0 Norway rat 35 35
No Yes Mus musculus 76_38 House mouse 79 79
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 41 34
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 33 33
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 35 33
No Yes Cavia porcellus 76_3 Domestic guinea pig 32 32
No Yes Oryctolagus cuniculus 76_2 Rabbit 31 31
No Yes Ochotona princeps 76 American pika 39 29
No Yes Tupaia belangeri 76 Northern tree shrew 33 22
No Yes Sus scrofa 76_10.2 Pig 49 49
No Yes Bos taurus 76_3.1 Cattle 31 31
No Yes Ovis aries 76_3.1 Sheep 34 34
No Yes Vicugna pacos 76_1 Alpaca 22 16
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 35 32
No Yes Mustela putorius furo 76_1.0 Domestic ferret 31 31
No Yes Ailuropoda melanoleuca 76_1 Giant panda 38 38
No Yes Canis familiaris 76_3.1 Dog 38 38
No Yes Felis catus 76_6.2 Domestic cat 33 33
No Yes Equus caballus 76_2 Horse 38 38
No Yes Myotis lucifugus 76_2.0 Little brown bat 31 31
No Yes Pteropus vampyrus 76_1 Large flying fox 37 32
No Yes Sorex araneus 76_1 European shrew 34 24
No Yes Erinaceus europaeus 76 Western European hedgehog 39 26
No Yes Procavia capensis 76_1 Cape rock hyrax 38 30
No Yes Loxodonta africana 76_3 African savanna elephant 46 46
No Yes Echinops telfairi 76 Small Madagascar hedgehog 32 27
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 37 36
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 22 16
No Yes Macropus eugenii 76_1.0 Tammar wallaby 39 31
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 39 39
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 32 32
No Yes Ornithorhynchus anatinus 76_5 Platypus 35 34
No Yes Saccoglossus kowalevskii v3.0   30 25
No Yes Petromyzon marinus 76_7.0 Sea lamprey 20 20
No Yes Meleagris gallopavo 76_2 Turkey 29 29
No Yes Gallus gallus 76_4 Chicken 31 31
No Yes Anas platyrhynchos 76_1.0 Mallard 28 27
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 30 30
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 29 28
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 36 36
No Yes Anolis carolinensis 76_2.0 Green anole 34 34
No Yes Xenopus laevis African clawed frog 31 31
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 37 37
No Yes Latimeria chalumnae 76_1 Coelacanth 39 39
No Yes Lepisosteus oculatus 76 Spotted gar 48 48
No Yes Gadus morhua 76_1 Atlantic cod 64 55
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 65 65
No Yes Takifugu rubripes 76_4 Torafugu 225 225
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 54 54
No Yes Oryzias latipes 76_1 Japanese medaka 56 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 52 52
No Yes Poecilia formosa 76 Amazon molly 60 59
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 75 73
No Yes Astyanax mexicanus 76 Mexican tetra 57 57
No Yes Danio rerio 76_9 Zebrafish 84 84
No Yes Oikopleura dioica   10 10
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 76 Vase tunicate 9 9
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 47 46
No Yes Adineta vaga   8 8
No Yes Octopus bimaculoides 280   6 6
No Yes Crassostrea gigas 22 Pacific oyster 15 13
No Yes Lottia gigantea Owl limpet 9 9
No Yes Helobdella robusta   17 15
No Yes Capitella sp. I   9 9
No Yes Danaus plexippus OGS1.0 Monarch butterfly 8 8
No Yes Heliconius melpomene Postman butterfly 8 8
No Yes Bombyx mori Domestic silkworm 9 9
No Yes Nasonia vitripennis Jewel wasp 7 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 25 25
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 7 7
No Yes Linepithema humile v1.1 Argentine ant 11 11
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 12 12
No Yes Solenopsis invicta v.2.2.3 Red fire ant 8 8
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 7 7
No Yes Atta cephalotes v1.1   12 12
No Yes Camponotus floridanus v3.3 Florida carpenter ant 9 9
No Yes Lucilia cuprina Australian sheep blowfly 5 5
No Yes Drosophila grimshawi 1.3   8 8
No Yes Drosophila willistoni 1.3   7 7
No Yes Drosophila pseudoobscura 2.13   7 7
No Yes Drosophila persimilis 1.3   7 7
No Yes Drosophila suzukii   9 7
No Yes Drosophila yakuba 1.3   7 7
No Yes Drosophila simulans 1.3   7 7
No Yes Drosophila sechellia 1.3   7 7
No Yes Drosophila melanogaster 76_5 Fruit fly 28 28
No Yes Drosophila erecta 1.3   7 7
No Yes Drosophila ananassae 1.3   7 7
No Yes Drosophila virilis 1.2   7 7
No Yes Drosophila mojavensis 1.3   7 7
No Yes Megaselia scalaris 22   7 6
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 8 8
No Yes Culex pipiens quinquefasciatus Southern house mosquito 7 6
No Yes Anopheles darlingi 22 American malaria mosquito 9 8
No Yes Anopheles gambiae 49_3j African malaria mosquito 8 8
No Yes Tribolium castaneum 3.0 Red flour beetle 7 7
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 7
No Yes Acyrthosiphon pisum Pea aphid 6 6
No Yes Rhodnius prolixus 22   5 5
No Yes Daphnia pulex Common water flea 7 7
No Yes Strigamia maritima 22   10 10
No Yes Sarcoptes scabiei   8 8
No Yes Tetranychus urticae Two-spotted spider mite 9 9
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 9
No Yes Pristionchus pacificus   6 6
No Yes Meloidogyne incognita Southern root-knot nematode 4 4
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   7 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 6 6
No Yes Caenorhabditis japonica   7 7
No Yes Caenorhabditis brenneri   9 9
No Yes Caenorhabditis remanei   6 6
No Yes Caenorhabditis elegans 76_235 Roundworm 14 14
No Yes Caenorhabditis briggsae 2   6 6
No Yes Trichinella spiralis 22   9 9
No Yes Hymenolepis microstoma   2 2
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   7 6
No Yes Mnemiopsis leidyi Sea walnut 12 11
No Yes Acropora digitifera v1.0   8 8
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 2
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   16 15
No Yes Trichoplax adhaerens   4 4
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 41 41
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 21 21
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 8 8
No Yes Ascaris suum Victoria/Ghent Pig roundworm 9 9
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 10 10
No Yes Homo sapiens 75_37 (old version GRC) Human 151 151
No Yes Homo sapiens (NCBI version) Human 54 54
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 31 31
No Yes Heliconius numata (Incomplete)   3 3
No Yes Loa loa v3.3 (Request) Eye worm 7 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 8 8
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Homo sapiens 69_37 Human 31 31
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 27 27
No Yes Gorilla gorilla 69_3.1 Western gorilla 31 31
No Yes Pongo abelii 69_2 Sumatran orangutan 32 32
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 32 32
No Yes Macaca mulatta 69_1 Rhesus monkey 31 31
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 34 34
No Yes Otolemur garnettii 69_3 Small-eared galago 29 29
No Yes Microcebus murinus 69_1 Gray mouse lemur 34 26
No Yes Rattus norvegicus 69_3.4 Norway rat 31 31
No Yes Mus musculus 69_38 House mouse 31 31
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 40 33
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 32 32
No Yes Cavia porcellus 69_3 Domestic guinea pig 31 31
No Yes Oryctolagus cuniculus 69_2 Rabbit 28 28
No Yes Ochotona princeps 69 American pika 39 29
No Yes Tupaia belangeri 69 Northern tree shrew 33 22
No Yes Sus scrofa 69_10.2 Pig 36 36
No Yes Bos taurus 69_3.1 Cattle 30 30
No Yes Vicugna pacos 69_1 Alpaca 21 15
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 34 31
No Yes Mustela putorius furo 69_1.0 Domestic ferret 31 31
No Yes Ailuropoda melanoleuca 69_1 Giant panda 30 30
No Yes Canis familiaris 69_3.1 Dog 31 31
No Yes Felis catus 69 Domestic cat 40 29
No Yes Equus caballus 69_2 Horse 31 31
No Yes Myotis lucifugus 69_2.0 Little brown bat 31 31
No Yes Pteropus vampyrus 69_1 Large flying fox 35 31
No Yes Sorex araneus 69_1 European shrew 34 24
No Yes Erinaceus europaeus 69 Western European hedgehog 39 26
No Yes Procavia capensis 69_1 Cape rock hyrax 37 29
No Yes Loxodonta africana 69_3 African savanna elephant 31 31
No Yes Echinops telfairi 69 Small Madagascar hedgehog 32 27
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 31 23
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 22 16
No Yes Macropus eugenii 69_1.0 Tammar wallaby 38 30
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 28 28
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 32 32
No Yes Ornithorhynchus anatinus 69_5 Platypus 32 31
No Yes Petromyzon marinus 69_7.0 Sea lamprey 19 19
No Yes Meleagris gallopavo 69_2 Turkey 27 27
No Yes Gallus gallus 69_2 Chicken 28 28
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 30 30
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 25 25
No Yes Anolis carolinensis 69_2.0 Green anole 33 33
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 28 28
No Yes Latimeria chalumnae 69_1 Coelacanth 33 33
No Yes Gadus morhua 69_1 Atlantic cod 56 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 50 50
No Yes Takifugu rubripes 69_4 Torafugu 49 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 46 46
No Yes Oryzias latipes 69_1 Japanese medaka 46 46
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 52 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 56 54
No Yes Danio rerio 69_9 Zebrafish 52 52
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 9 9
No Yes Drosophila melanogaster 69_5 Fruit fly 7 7
No Yes Caenorhabditis elegans 69_215 Roundworm 6 6
No Yes NCBI 2017_08 genome   19264 19139
No Yes STRING v9.0.5 (STRING)   1052 1026
No Yes Uniprot 2018_03 genome   10052 9882
No Yes NCBI viral sequences (Viral)   20 20
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   64 64
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   103 103
No Yes TargetDB (Targets)   61 61
No Yes UniProt viral sequences (Viral)   71 71

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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