SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Astyanax mexicanus 76 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Astyanax mexicanus 76

Assignment details

(show help)


Astyanax mexicanus 76 has 274 significant domains in 73 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSAMXP00000001063   5.53e-16   292-358   Complement control module/SCR domain  
  0.0000000000000959   405-467   Complement control module/SCR domain  
  0.0000000000195   350-415   Complement control module/SCR domain  
  0.000000000134   243-302   Complement control module/SCR domain  
  0.00000000058   150-209   Complement control module/SCR domain  
  0.000000124   26-86   Complement control module/SCR domain  
  0.00089   121-145   Complement control module/SCR domain  
ENSAMXP00000001752   0.00000000000806   60-126   Complement control module/SCR domain  
ENSAMXP00000001848   0.000000000000862   688-745   Complement control module/SCR domain  
ENSAMXP00000002004   0.0000000000813   433-489   Complement control module/SCR domain  
  0.000000000729   128-185   Complement control module/SCR domain  
  0.0000000877   313-367   Complement control module/SCR domain  
  0.000000117   248-304   Complement control module/SCR domain  
  0.00000057   191-244   Complement control module/SCR domain  
  0.00000117   68-124   Complement control module/SCR domain  
  0.0000236   10-65   Complement control module/SCR domain  
ENSAMXP00000002005   0.00000000000000564   92-150   Complement control module/SCR domain  
  0.0000000292   192-246   Complement control module/SCR domain  
  0.0000382   29-86   Complement control module/SCR domain  
ENSAMXP00000002007   0.0000000000000264   115-176   Complement control module/SCR domain  
  0.0000000000695   262-320   Complement control module/SCR domain  
  0.000000000181   78-130   Complement control module/SCR domain  
ENSAMXP00000002470   0.000000000000181   173-245   Complement control module/SCR domain  
  0.000000000054   235-295   Complement control module/SCR domain  
  0.0000000000625   50-111   Complement control module/SCR domain  
  0.0000000107   116-171   Complement control module/SCR domain  
ENSAMXP00000003267   0.00000000000000405   583-654   Complement control module/SCR domain  
  0.000000000000278   644-705   Complement control module/SCR domain  
  0.000000000000391   226-290   Complement control module/SCR domain  
  0.000000000000865   712-771   Complement control module/SCR domain  
  0.000000000445   405-468   Complement control module/SCR domain  
ENSAMXP00000003601   1.67e-16   26-83   Complement control module/SCR domain  
ENSAMXP00000003695   0.000000000000103   81-148   Complement control module/SCR domain  
ENSAMXP00000003877   0.00000000000361   9-74   Complement control module/SCR domain  
ENSAMXP00000003995   1.35e-18   2560-2628   Complement control module/SCR domain  
  3.24e-18   2617-2686   Complement control module/SCR domain  
  1.62e-16   2977-3046   Complement control module/SCR domain  
  0.00000000000000153   2501-2570   Complement control module/SCR domain  
  0.00000000000000862   2676-2743   Complement control module/SCR domain  
  0.0000000000000175   2323-2396   Complement control module/SCR domain  
  0.0000000000000236   3098-3164   Complement control module/SCR domain  
  0.000000000000032   426-489   Complement control module/SCR domain  
  0.0000000000000334   771-831   Complement control module/SCR domain  
  0.0000000000000361   2732-2794   Complement control module/SCR domain  
  0.0000000000000723   1114-1180   Complement control module/SCR domain  
  0.0000000000000863   1289-1352   Complement control module/SCR domain  
  0.000000000000167   3035-3092   Complement control module/SCR domain  
  0.000000000000417   596-661   Complement control module/SCR domain  
  0.000000000000459   1646-1710   Complement control module/SCR domain  
  0.000000000000695   1992-2051   Complement control module/SCR domain  
  0.00000000000162   2385-2452   Complement control module/SCR domain  
  0.00000000000256   39-100   Complement control module/SCR domain  
  0.00000000000806   3152-3213   Complement control module/SCR domain  
  0.000000000148   944-1001   Complement control module/SCR domain  
  0.000000445   1822-1866   Complement control module/SCR domain  
ENSAMXP00000004361   0.0000000000000113   9-68   Complement control module/SCR domain  
ENSAMXP00000004693   0.0000000000598   648-705   Complement control module/SCR domain  
ENSAMXP00000005157   1.62e-18   2020-2089   Complement control module/SCR domain  
  5.67e-18   2259-2328   Complement control module/SCR domain  
  1.07e-17   2629-2694   Complement control module/SCR domain  
  4.59e-17   2572-2640   Complement control module/SCR domain  
  6.81e-17   2687-2756   Complement control module/SCR domain  
  7.69e-17   3096-3166   Complement control module/SCR domain  
  1.2e-16   2746-2808   Complement control module/SCR domain  
  2.97e-16   2803-2867   Complement control module/SCR domain  
  8.76e-16   2317-2386   Complement control module/SCR domain  
  0.00000000000000111   2078-2152   Complement control module/SCR domain  
  0.00000000000000153   2376-2438   Complement control module/SCR domain  
  0.00000000000000229   1646-1708   Complement control module/SCR domain  
  0.00000000000000391   2433-2500   Complement control module/SCR domain  
  0.00000000000000661   2142-2209   Complement control module/SCR domain  
  0.0000000000000125   3276-3333   Complement control module/SCR domain  
  0.0000000000000131   2976-3044   Complement control module/SCR domain  
  0.0000000000000208   333-404   Complement control module/SCR domain  
  0.000000000000025   1591-1657   Complement control module/SCR domain  
  0.000000000000389   3156-3221   Complement control module/SCR domain  
  0.0000000000005   2526-2582   Complement control module/SCR domain  
  0.00000000000709   394-459   Complement control module/SCR domain  
  0.000000000082   1894-1962   Complement control module/SCR domain  
  0.000000000121   2864-2925   Complement control module/SCR domain  
  0.000000000167   2201-2264   Complement control module/SCR domain  
  0.00000000057   1951-2011   Complement control module/SCR domain  
  0.00000000202   2919-2981   Complement control module/SCR domain  
  0.0000000153   3037-3102   Complement control module/SCR domain  
  0.000000236   448-509   Complement control module/SCR domain  
  0.00000347   3226-3285   Complement control module/SCR domain  
  0.0000208   682-734   Complement control module/SCR domain  
  0.00032   1867-1906   Complement control module/SCR domain  
ENSAMXP00000005258   0.00000000236   103-157   Complement control module/SCR domain  
  0.000011   53-100   Complement control module/SCR domain  
ENSAMXP00000005490   1.67e-20   124-195   Complement control module/SCR domain  
  9.87e-18   9-76   Complement control module/SCR domain  
  2.5e-17   65-129   Complement control module/SCR domain  
  3.91e-17   184-251   Complement control module/SCR domain  
  0.00000000000000153   243-300   Complement control module/SCR domain  
  0.0000000000000584   366-425   Complement control module/SCR domain  
ENSAMXP00000005499   7.78e-16   35-100   Complement control module/SCR domain  
  0.0000000000000598   2-50   Complement control module/SCR domain  
ENSAMXP00000006123   0.000000000000445   569-632   Complement control module/SCR domain  
  0.000027   624-680   Complement control module/SCR domain  
ENSAMXP00000006126   0.000000000000445   568-631   Complement control module/SCR domain  
  0.000027   623-679   Complement control module/SCR domain  
ENSAMXP00000006689   0.0000000000000106   308-376   Complement control module/SCR domain  
  0.0000486   367-425   Complement control module/SCR domain  
ENSAMXP00000006892   0.0000000000000183   728-792   Complement control module/SCR domain  
  0.000000000000101   788-850   Complement control module/SCR domain  
  0.000000000000667   374-436   Complement control module/SCR domain  
  0.00000000000729   856-915   Complement control module/SCR domain  
  0.00000000195   550-614   Complement control module/SCR domain  
ENSAMXP00000007357   0.00000000000000162   88-149   Complement control module/SCR domain  
  0.000000000000553   154-210   Complement control module/SCR domain  
  0.00000000134   30-96   Complement control module/SCR domain  
ENSAMXP00000007408   0.00000000000000113   88-149   Complement control module/SCR domain  
  0.00000000000125   154-210   Complement control module/SCR domain  
  0.0000000175   37-96   Complement control module/SCR domain  
ENSAMXP00000007414   0.00000000000000113   86-147   Complement control module/SCR domain  
  0.00000000000125   152-208   Complement control module/SCR domain  
  0.0000000175   35-94   Complement control module/SCR domain  
ENSAMXP00000007737   0.00000000000208   178-242   Complement control module/SCR domain  
  0.00000195   237-292   Complement control module/SCR domain  
ENSAMXP00000007798   0.000000000000264   1907-1967   Complement control module/SCR domain  
ENSAMXP00000007915   0.0000000403   1406-1469   Complement control module/SCR domain  
  0.00000292   1214-1288   Complement control module/SCR domain  
  0.00079   1299-1328,1388-1415   Complement control module/SCR domain  
ENSAMXP00000008825   0.00000000162   34-94   Complement control module/SCR domain  
ENSAMXP00000009179   0.0000000000000144   707-765   Complement control module/SCR domain  
  0.000000000000288   767-829   Complement control module/SCR domain  
  0.00000000000485   835-894   Complement control module/SCR domain  
  0.00000000008   530-594   Complement control module/SCR domain  
ENSAMXP00000009266   0.0000000000111   628-694   Complement control module/SCR domain  
  0.0000292   683-742   Complement control module/SCR domain  
ENSAMXP00000009270   0.000000000122   3060-3120   Complement control module/SCR domain  
ENSAMXP00000009290   0.000000000000132   548-613   Complement control module/SCR domain  
  0.00000000542   603-660   Complement control module/SCR domain  
ENSAMXP00000009836   0.000000000403   1238-1307   Complement control module/SCR domain  
  0.000000000612   1184-1243   Complement control module/SCR domain  
  0.000000222   1107-1180   Complement control module/SCR domain  
  0.0000011   1299-1369   Complement control module/SCR domain  
ENSAMXP00000010486   0.00000000000945   176-237   Complement control module/SCR domain  
  0.0000000000756   242-300   Complement control module/SCR domain  
  0.00000000834   39-98   Complement control module/SCR domain  
  0.000000473   112-163   Complement control module/SCR domain  
ENSAMXP00000010614   0.00000000000000222   405-470   Complement control module/SCR domain  
  0.0000000000000222   363-421   Complement control module/SCR domain  
  0.0000000000000389   523-588   Complement control module/SCR domain  
  0.0000000000000709   585-651   Complement control module/SCR domain  
  0.0000000000000876   225-292   Complement control module/SCR domain  
  0.000000000000181   175-235   Complement control module/SCR domain  
  0.00000000000208   673-721   Complement control module/SCR domain  
  0.00000195   311-354   Complement control module/SCR domain  
ENSAMXP00000010949   0.0000000129   296-356   Complement control module/SCR domain  
ENSAMXP00000011013   0.000000000000945   324-394   Complement control module/SCR domain  
  0.000000000167   391-463   Complement control module/SCR domain  
ENSAMXP00000012242   0.0000000000126   112-174   Complement control module/SCR domain  
ENSAMXP00000012274   0.0000000000000891   3-61   Complement control module/SCR domain  
  0.0000000000128   68-128   Complement control module/SCR domain  
ENSAMXP00000012662   7.92e-19   2541-2609   Complement control module/SCR domain  
  3.91e-18   2954-3023   Complement control module/SCR domain  
  1.21e-17   2598-2666   Complement control module/SCR domain  
  1.81e-17   2894-2965   Complement control module/SCR domain  
  5.26e-17   2293-2366   Complement control module/SCR domain  
  5.28e-16   2835-2905   Complement control module/SCR domain  
  0.00000000000000243   2658-2726   Complement control module/SCR domain  
  0.00000000000000639   3074-3141   Complement control module/SCR domain  
  0.0000000000000082   1949-2017   Complement control module/SCR domain  
  0.0000000000000131   2355-2422   Complement control module/SCR domain  
  0.0000000000000278   2482-2545   Complement control module/SCR domain  
  0.000000000000032   1776-1837   Complement control module/SCR domain  
  0.0000000000000337   1425-1489   Complement control module/SCR domain  
  0.0000000000000526   1252-1317   Complement control module/SCR domain  
  0.0000000000000862   210-281   Complement control module/SCR domain  
  0.000000000000125   1602-1667   Complement control module/SCR domain  
  0.000000000000195   1077-1142   Complement control module/SCR domain  
  0.000000000000653   734-794   Complement control module/SCR domain  
  0.000000000000792   2719-2779   Complement control module/SCR domain  
  0.000000000000834   389-453   Complement control module/SCR domain  
  0.000000000000944   6-66   Complement control module/SCR domain  
  0.00000000000113   559-628   Complement control module/SCR domain  
  0.00000000000306   3007-3068   Complement control module/SCR domain  
  0.0000000000459   3133-3191   Complement control module/SCR domain  
  0.0000000000594   907-969   Complement control module/SCR domain  
  0.0000000000729   2119-2183   Complement control module/SCR domain  
  0.0000000115   2433-2493   Complement control module/SCR domain  
ENSAMXP00000012961   0.000000000000621   17-90   Complement control module/SCR domain  
  0.0000000000202   80-140   Complement control module/SCR domain  
ENSAMXP00000013528   0.00000000000153   312-388   Complement control module/SCR domain  
  0.00000000000236   379-446   Complement control module/SCR domain  
ENSAMXP00000013990   0.00000000000917   1506-1565   Complement control module/SCR domain  
ENSAMXP00000014029   4.18e-16   59-115   Complement control module/SCR domain  
ENSAMXP00000014171   0.000000000000278   89-146   Complement control module/SCR domain  
ENSAMXP00000015592   4.59e-17   85-151   Complement control module/SCR domain  
  0.000000000000112   266-337   Complement control module/SCR domain  
  0.000000000000153   207-267   Complement control module/SCR domain  
  0.00000000000862   24-95   Complement control module/SCR domain  
  0.000000000103   142-210   Complement control module/SCR domain  
ENSAMXP00000015942   0.0000301   11-68   Complement control module/SCR domain  
ENSAMXP00000015943   0.0000236   11-68   Complement control module/SCR domain  
ENSAMXP00000016297   0.0000000000195   1223-1283   Complement control module/SCR domain  
ENSAMXP00000016522   7.63e-17   208-287   Complement control module/SCR domain  
  0.00000000000000105   149-211   Complement control module/SCR domain  
  0.000000000278   103-158   Complement control module/SCR domain  
  0.00000005   4-67   Complement control module/SCR domain  
ENSAMXP00000017081   0.0000000000148   190-247   Complement control module/SCR domain  
  0.000000000082   84-140   Complement control module/SCR domain  
  0.00000000034   27-97   Complement control module/SCR domain  
ENSAMXP00000017684   0.0000000000000389   106-174   Complement control module/SCR domain  
  0.0000000000236   164-222   Complement control module/SCR domain  
  0.000000057   43-116   Complement control module/SCR domain  
ENSAMXP00000017702   0.000000000000089   9-78   Complement control module/SCR domain  
  0.0000000000459   68-127   Complement control module/SCR domain  
ENSAMXP00000017716   0.0000000000000114   152-214   Complement control module/SCR domain  
  0.000000000000144   206-268   Complement control module/SCR domain  
  0.0000000000723   91-162   Complement control module/SCR domain  
  0.000000000315   26-101   Complement control module/SCR domain  
ENSAMXP00000018145   0.000000000000189   280-341   Complement control module/SCR domain  
ENSAMXP00000018187   0.00000000000000878   99-163   Complement control module/SCR domain  
  0.0000000000189   152-220   Complement control module/SCR domain  
  0.00000000516   410-472   Complement control module/SCR domain  
  0.0000000315   40-102   Complement control module/SCR domain  
  0.000000101   242-288   Complement control module/SCR domain  
  0.000000197   351-407   Complement control module/SCR domain  
  0.00000031   307-349   Complement control module/SCR domain  
ENSAMXP00000018188   0.000000000000315   81-149   Complement control module/SCR domain  
  0.000000000000472   135-200   Complement control module/SCR domain  
  0.0000000000367   555-612   Complement control module/SCR domain  
  0.000000106   682-735   Complement control module/SCR domain  
  0.000000315   198-259   Complement control module/SCR domain  
  0.00000113   252-321   Complement control module/SCR domain  
  0.0000013   505-566   Complement control module/SCR domain  
  0.00000131   619-676   Complement control module/SCR domain  
  0.00000262   377-432   Complement control module/SCR domain  
  0.000119   326-386   Complement control module/SCR domain  
  0.00084   29-91   Complement control module/SCR domain  
  0.00432   445-500   Complement control module/SCR domain  
ENSAMXP00000018481   0.000000000236   102-156   Complement control module/SCR domain  
  0.00000139   52-99   Complement control module/SCR domain  
ENSAMXP00000018531   0.00000000000000181   17-84   Complement control module/SCR domain  
  0.00000000000126   89-142   Complement control module/SCR domain  
ENSAMXP00000018538   0.00000000000000153   106-171   Complement control module/SCR domain  
ENSAMXP00000018542   0.0000000000000431   18-84   Complement control module/SCR domain  
ENSAMXP00000018544   2.75e-16   222-286   Complement control module/SCR domain  
  0.00000000000000222   48-112   Complement control module/SCR domain  
ENSAMXP00000018550   0.0000000000005   18-77   Complement control module/SCR domain  
ENSAMXP00000018552   9.59e-16   77-132   Complement control module/SCR domain  
ENSAMXP00000018557   0.000000025   2-51   Complement control module/SCR domain  
ENSAMXP00000018562   0.0000000000000115   135-200   Complement control module/SCR domain  
ENSAMXP00000019307   0.00000000000681   1212-1270   Complement control module/SCR domain  
ENSAMXP00000019398   0.000000000000101   18-78   Complement control module/SCR domain  
ENSAMXP00000019646   0.0000000139   598-647   Complement control module/SCR domain  
ENSAMXP00000021163   0.000000000375   98-158   Complement control module/SCR domain  
ENSAMXP00000021547   1.36e-18   2893-2961   Complement control module/SCR domain  
  1.95e-18   2950-3020   Complement control module/SCR domain  
  4.99e-18   2651-2714   Complement control module/SCR domain  
  7.15e-18   2708-2776   Complement control module/SCR domain  
  1.62e-17   2767-2833   Complement control module/SCR domain  
  1.89e-17   3009-3080   Complement control module/SCR domain  
  2.64e-16   2822-2884   Complement control module/SCR domain  
  6.48e-16   3071-3134   Complement control module/SCR domain  
  0.00000000000000756   1705-1777   Complement control module/SCR domain  
  0.00000000000000917   3128-3184   Complement control module/SCR domain  
  0.0000000000000113   3189-3257   Complement control module/SCR domain  
  0.0000000000000175   2054-2123   Complement control module/SCR domain  
  0.0000000000000297   1355-1419   Complement control module/SCR domain  
  0.0000000000000334   491-549   Complement control module/SCR domain  
  0.0000000000000556   1528-1593   Complement control module/SCR domain  
  0.0000000000000751   2465-2532   Complement control module/SCR domain  
  0.0000000000000792   2403-2476   Complement control module/SCR domain  
  0.000000000000089   1880-1942   Complement control module/SCR domain  
  0.000000000000101   1181-1243   Complement control module/SCR domain  
  0.000000000000135   6-72   Complement control module/SCR domain  
  0.000000000000148   837-896   Complement control module/SCR domain  
  0.000000000000418   662-730   Complement control module/SCR domain  
  0.000000000000431   2592-2655   Complement control module/SCR domain  
  0.000000000000553   1010-1074   Complement control module/SCR domain  
  0.00000000000264   3248-3306   Complement control module/SCR domain  
  0.0000000000027   2537-2599   Complement control module/SCR domain  
  0.000000000202   2225-2286   Complement control module/SCR domain  
  0.0000584   313-377   Complement control module/SCR domain  
ENSAMXP00000022107   0.0000000000000106   114-175   Complement control module/SCR domain  
  0.000000000129   61-124   Complement control module/SCR domain  
 
Weak hits:
ENSAMXP00000012838   0.0864   221-254   Complement control module/SCR domain  
ENSAMXP00000025880   0.0412   205-249   Complement control module/SCR domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Complement control module/SCR domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.