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  Home > Genomes > Mus musculus 76_38 > FnI-like domain domains


FnI-like domain superfamily domain assignments
in
Mus musculus 76_38

Assignment details

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Mus musculus 76_38 has 258 significant domains in 68 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000001547   0.0000000000000617   29-89   VWC domain  
ENSMUSP00000001995   0.0000303   2423-2499   VWC domain  
  0.000067   2569-2650   VWC domain  
  0.000638   827-893   Fibronectin type I module  
  0.0126   699-740   VWC domain  
ENSMUSP00000005255   0.00000000488   115-185   VWC domain  
ENSMUSP00000007171   0.000000000000178   699-760   VWC domain  
  0.0000000418   49-127   VWC domain  
  0.00000136   777-846   VWC domain  
  0.0000104   865-928   VWC domain  
ENSMUSP00000020171   0.000000199   94-165   Fibronectin type I module  
ENSMUSP00000023123   0.00000000000045   30-90   VWC domain  
ENSMUSP00000026590   0.00000126   227-299   VWC domain  
ENSMUSP00000029846   0.00000555   98-163   Fibronectin type I module  
ENSMUSP00000032977   2.49e-16   246-312   VWC domain  
  0.0000000000356   31-98   VWC domain  
  0.000000000596   109-176   VWC domain  
ENSMUSP00000033941   3.35e-19   33-82   Fibronectin type I module  
ENSMUSP00000039699   0.0000157   2465-2548   VWC domain  
  0.000146   2369-2440   VWC domain  
  0.000199   861-901   Fibronectin type I module  
  0.00492   2558-2616   VWC domain  
  0.0743   1222-1265   Fibronectin type I module  
ENSMUSP00000043250   0.00000000000638   145-216   VWC domain  
  0.00000000000931   92-153   VWC domain  
  0.000000000167   218-278   VWC domain  
  0.000000000785   21-88   VWC domain  
  0.00000000293   271-343   VWC domain  
  0.00000126   366-421   VWC domain  
ENSMUSP00000044903   0.000000000000335   317-375   VWC domain  
ENSMUSP00000047991   0.0000000387   2756-2836   VWC domain  
  0.000000732   4827-4895   VWC domain  
  0.00000188   751-819   Fibronectin type I module  
  0.00000994   854-895   VWC domain  
  0.000199   4055-4117   Fibronectin type I module  
  0.00157   1824-1886   Fibronectin type I module  
  0.00251   404-444   VWC domain  
ENSMUSP00000049692   0.000000000262   216-274   VWC domain  
  0.000429   152-212   Fibronectin type I module  
  0.0701   277-322   Fibronectin type I module  
ENSMUSP00000054389   0.000091   102-167   Fibronectin type I module  
ENSMUSP00000054499   0.0000000000000113   557-603   Fibronectin type I module  
  0.0000000000000314   515-559   Fibronectin type I module  
  0.0000000000000589   2339-2382   Fibronectin type I module  
  0.000000000000128   472-512   Fibronectin type I module  
  0.00000000000017   231-274   Fibronectin type I module  
  0.000000000000493   94-139   Fibronectin type I module  
  0.00000000000118   185-228   Fibronectin type I module  
  0.0000000000014   2294-2337   Fibronectin type I module  
  0.0000000000034   50-91   Fibronectin type I module  
  0.00000000000449   142-182   Fibronectin type I module  
  0.0000000000157   2382-2423   Fibronectin type I module  
  0.000000000196   306-344   Fibronectin type I module  
ENSMUSP00000056193   0.00000000000345   108-176   VWC domain  
  0.00000000000837   252-319   VWC domain  
  0.000000000159   30-96   VWC domain  
ENSMUSP00000056958   0.000000000199   485-553   VWC domain  
  0.000000000241   620-679   VWC domain  
  0.000000000492   376-433   VWC domain  
  0.0000000167   426-487   VWC domain  
  0.0000000188   559-617   VWC domain  
  0.000000146   670-722   VWC domain  
ENSMUSP00000058142   0.00000000492   104-173   VWC domain  
  0.00241   51-111   Fibronectin type I module  
  0.00607   176-217   VWC domain  
ENSMUSP00000060402   0.000000000000115   96-154   VWC domain  
ENSMUSP00000071872   0.00000000000000858   157-226   VWC domain  
  0.00000000439   284-359   VWC domain  
  0.0000000617   99-165   VWC domain  
  0.00000701   62-106   VWC domain  
  0.0000335   236-289   VWC domain  
ENSMUSP00000074230   0.000000000000366   108-176   VWC domain  
  0.00000000000279   252-319   VWC domain  
  0.0000000000837   30-96   VWC domain  
ENSMUSP00000074751   0.0000000000628   271-335   VWC domain  
  0.00000000167   690-763   VWC domain  
  0.00022   336-400   Fibronectin type I module  
ENSMUSP00000077251   0.0000000000000167   130-192   VWC domain  
  0.000000000000157   478-547   VWC domain  
  0.000000000000188   305-370   VWC domain  
  0.00000000000262   596-662   VWC domain  
  0.0000000000046   893-960   VWC domain  
  0.00000000000617   1148-1209   VWC domain  
  0.0000000000377   775-840   VWC domain  
  0.000000000101   424-485   VWC domain  
  0.000000000136   951-1016   VWC domain  
  0.000000000366   193-251   VWC domain  
  0.00000000103   253-312   VWC domain  
  0.00000000126   1010-1085   VWC domain  
  0.00000000942   363-423   Fibronectin type I module  
  0.0000000115   537-598   VWC domain  
  0.0000000115   718-780   VWC domain  
  0.000000136   834-889   VWC domain  
  0.00000157   1098-1145   VWC domain  
  0.000023   678-723   VWC domain  
  0.000105   92-127   VWC domain  
ENSMUSP00000080550   0.000000000023   267-333   VWC domain  
  0.0000000115   682-754   VWC domain  
  0.00000921   334-391   VWC domain  
  0.0157   765-802   VWC domain  
ENSMUSP00000083620   0.00000000000000502   38-97   VWC domain  
ENSMUSP00000085192   0.00000000000513   31-91   VWC domain  
ENSMUSP00000088954   0.0000000000000167   130-192   VWC domain  
  0.000000000000188   305-370   VWC domain  
  0.0000000000009   596-662   VWC domain  
  0.00000000000952   893-960   VWC domain  
  0.00000000000963   482-547   VWC domain  
  0.0000000000199   1143-1208   VWC domain  
  0.0000000000303   775-844   VWC domain  
  0.0000000000711   193-251   VWC domain  
  0.000000000103   424-485   VWC domain  
  0.000000000398   951-1017   VWC domain  
  0.000000000795   1010-1084   VWC domain  
  0.00000000115   253-312   VWC domain  
  0.00000000565   363-425   Fibronectin type I module  
  0.0000000136   537-598   VWC domain  
  0.0000000837   718-778   VWC domain  
  0.000000398   834-892   VWC domain  
  0.00000157   1097-1144   VWC domain  
  0.0000115   677-723   VWC domain  
  0.000146   92-127   VWC domain  
ENSMUSP00000099135   0.000000000000022   130-192   VWC domain  
  0.000000000000199   478-547   VWC domain  
  0.000000000000251   305-370   VWC domain  
  0.00000000000335   596-662   VWC domain  
  0.00000000000586   893-960   VWC domain  
  0.00000000000785   1148-1209   VWC domain  
  0.0000000000481   775-840   VWC domain  
  0.000000000126   424-485   VWC domain  
  0.000000000167   951-1016   VWC domain  
  0.000000000471   193-251   VWC domain  
  0.00000000136   253-312   VWC domain  
  0.00000000167   1010-1085   VWC domain  
  0.0000000115   363-423   Fibronectin type I module  
  0.0000000146   537-598   VWC domain  
  0.0000000157   718-780   VWC domain  
  0.000000167   834-889   VWC domain  
  0.00000115   1098-1145   VWC domain  
  0.0000314   678-723   VWC domain  
  0.000136   92-127   VWC domain  
ENSMUSP00000102699   2.54e-16   253-319   VWC domain  
  0.0000000000387   38-105   VWC domain  
  0.000000000596   116-183   VWC domain  
ENSMUSP00000103229   0.000000000023   267-333   VWC domain  
  0.0000000136   635-707   VWC domain  
  0.00000628   334-391   VWC domain  
  0.00115   577-640   VWC domain  
  0.0199   718-755   VWC domain  
ENSMUSP00000105303   0.000000000262   216-274   VWC domain  
  0.000429   152-212   Fibronectin type I module  
  0.0701   277-322   Fibronectin type I module  
ENSMUSP00000107873   0.0000303   2426-2502   VWC domain  
  0.000068   2572-2653   VWC domain  
  0.000638   830-896   Fibronectin type I module  
  0.0126   702-743   VWC domain  
ENSMUSP00000108117   0.0000000000000146   813-877   VWC domain  
  0.000000000000136   401-461   VWC domain  
  0.00000000000879   679-736   VWC domain  
  0.0000000000262   320-393   VWC domain  
  0.000000000126   606-666   VWC domain  
  0.000000000209   753-811   VWC domain  
ENSMUSP00000108499   0.00000000000345   108-176   VWC domain  
  0.00000000000837   252-319   VWC domain  
  0.000000000159   30-96   VWC domain  
ENSMUSP00000110411   0.0000272   226-267   VWC domain  
ENSMUSP00000111083   0.000000023   49-127   VWC domain  
ENSMUSP00000113703   0.0000000000711   1411-1468   VWC domain  
ENSMUSP00000115806   0.00000398   710-793   VWC domain  
  0.0000251   614-684   VWC domain  
  0.00146   803-861   VWC domain  
ENSMUSP00000116951   0.00000000000000534   29-90   VWC domain  
ENSMUSP00000123819   0.00000000178   56-126   VWC domain  
  0.00324   129-170   VWC domain  
ENSMUSP00000124097   0.000000377   130-160   VWC domain  
  0.00000952   87-127   VWC domain  
ENSMUSP00000124771   0.00000000000157   164-231   VWC domain  
  0.00000000000638   46-111   VWC domain  
  0.0000000000251   222-287   VWC domain  
  0.000000000157   281-354   VWC domain  
  0.0000000188   105-160   VWC domain  
  0.0000387   1-51   VWC domain  
ENSMUSP00000125699   0.000000000000011   8-77   VWC domain  
ENSMUSP00000128276   0.0000366   389-430   Fibronectin type I module  
  0.000126   4558-4636   Fibronectin type I module  
  0.00837   859-899   Fibronectin type I module  
ENSMUSP00000128308   0.00000000000743   318-375   VWC domain  
ENSMUSP00000128761   0.000000000262   216-274   VWC domain  
  0.000429   152-212   Fibronectin type I module  
  0.0701   277-322   Fibronectin type I module  
ENSMUSP00000130284   0.000000000000366   108-176   VWC domain  
  0.00000000000279   252-319   VWC domain  
  0.0000000000837   30-96   VWC domain  
ENSMUSP00000130949   0.0000732   933-973   VWC domain  
ENSMUSP00000131401   0.0000000387   2901-2981   VWC domain  
  0.00000068   4970-5038   VWC domain  
  0.00000188   874-942   Fibronectin type I module  
  0.0000103   977-1018   VWC domain  
  0.000199   4198-4260   Fibronectin type I module  
  0.00167   1965-2027   Fibronectin type I module  
  0.00262   527-567   VWC domain  
ENSMUSP00000131665   0.0000000000628   271-335   VWC domain  
  0.00000000167   690-763   VWC domain  
  0.00022   336-400   Fibronectin type I module  
ENSMUSP00000131681   0.0000157   2465-2548   VWC domain  
  0.000146   2369-2440   VWC domain  
  0.000199   861-901   Fibronectin type I module  
  0.00492   2558-2616   VWC domain  
  0.0743   1222-1265   Fibronectin type I module  
ENSMUSP00000135147   0.0000000942   94-165   Fibronectin type I module  
ENSMUSP00000138259   0.0000000046   49-127   VWC domain  
ENSMUSP00000139155   0.0000931   92-156   VWC domain  
ENSMUSP00000139484   0.0000973   229-291   Fibronectin type I module  
ENSMUSP00000139702   0.00000000000000968   557-603   Fibronectin type I module  
  0.0000000000000275   515-559   Fibronectin type I module  
  0.000000000000051   2038-2081   Fibronectin type I module  
  0.000000000000111   472-512   Fibronectin type I module  
  0.000000000000144   231-274   Fibronectin type I module  
  0.000000000000379   94-139   Fibronectin type I module  
  0.00000000000102   185-228   Fibronectin type I module  
  0.0000000000012   1993-2036   Fibronectin type I module  
  0.00000000000288   50-91   Fibronectin type I module  
  0.0000000000034   142-182   Fibronectin type I module  
  0.0000000000131   2081-2122   Fibronectin type I module  
  0.00000000017   306-344   Fibronectin type I module  
ENSMUSP00000140315   0.0000000000000157   231-274   Fibronectin type I module  
  0.0000000000000432   94-139   Fibronectin type I module  
  0.000000000000116   185-228   Fibronectin type I module  
  0.00000000000034   50-91   Fibronectin type I module  
  0.000000000000393   142-182   Fibronectin type I module  
  0.0000000000196   306-344   Fibronectin type I module  
ENSMUSP00000140372   0.0000000000000275   96-139   Fibronectin type I module  
  0.0000000000000942   53-93   Fibronectin type I module  
  0.000434   139-160   Fibronectin type I module  
ENSMUSP00000140471   0.0000000000000107   557-603   Fibronectin type I module  
  0.0000000000000301   515-559   Fibronectin type I module  
  0.0000000000000563   2248-2291   Fibronectin type I module  
  0.000000000000123   472-512   Fibronectin type I module  
  0.000000000000157   231-274   Fibronectin type I module  
  0.000000000000478   94-139   Fibronectin type I module  
  0.00000000000113   185-228   Fibronectin type I module  
  0.00000000000133   2203-2246   Fibronectin type I module  
  0.00000000000327   50-91   Fibronectin type I module  
  0.00000000000379   142-182   Fibronectin type I module  
  0.0000000000144   2291-2332   Fibronectin type I module  
  0.000000000183   306-344   Fibronectin type I module  
ENSMUSP00000140483   0.0000743   392-440   VWC domain  
ENSMUSP00000140816   0.0000000000000102   557-603   Fibronectin type I module  
  0.0000000000000288   515-559   Fibronectin type I module  
  0.0000000000000536   2133-2176   Fibronectin type I module  
  0.000000000000116   472-512   Fibronectin type I module  
  0.000000000000144   231-274   Fibronectin type I module  
  0.000000000000449   94-139   Fibronectin type I module  
  0.00000000000107   185-228   Fibronectin type I module  
  0.00000000000126   2088-2131   Fibronectin type I module  
  0.00000000000301   50-91   Fibronectin type I module  
  0.00000000000353   142-182   Fibronectin type I module  
  0.0000000000144   2176-2217   Fibronectin type I module  
  0.000000000183   306-344   Fibronectin type I module  
ENSMUSP00000140907   0.0000000000000101   557-603   Fibronectin type I module  
  0.0000000000000288   515-559   Fibronectin type I module  
  0.0000000000000523   2128-2171   Fibronectin type I module  
  0.000000000000116   472-512   Fibronectin type I module  
  0.000000000000144   231-274   Fibronectin type I module  
  0.000000000000449   94-139   Fibronectin type I module  
  0.00000000000106   185-228   Fibronectin type I module  
  0.00000000000108   2083-2126   Fibronectin type I module  
  0.00000000000301   50-91   Fibronectin type I module  
  0.00000000000353   142-182   Fibronectin type I module  
  0.0000000000144   2171-2212   Fibronectin type I module  
  0.000000000183   306-344   Fibronectin type I module  
ENSMUSP00000140975   0.0000000000000106   557-603   Fibronectin type I module  
  0.0000000000000301   515-559   Fibronectin type I module  
  0.000000000000055   2223-2266   Fibronectin type I module  
  0.000000000000122   472-512   Fibronectin type I module  
  0.000000000000157   231-274   Fibronectin type I module  
  0.000000000000478   94-139   Fibronectin type I module  
  0.00000000000111   185-228   Fibronectin type I module  
  0.00000000000133   2178-2221   Fibronectin type I module  
  0.00000000000314   50-91   Fibronectin type I module  
  0.00000000000366   142-182   Fibronectin type I module  
  0.0000000000144   2266-2307   Fibronectin type I module  
  0.000000000183   306-344   Fibronectin type I module  
ENSMUSP00000141040   0.0000178   810-860   Fibronectin type I module  
  0.0001   342-389   VWC domain  
ENSMUSP00000141123   0.0000000000000103   557-603   Fibronectin type I module  
  0.0000000000000288   515-559   Fibronectin type I module  
  0.0000000000000536   2158-2201   Fibronectin type I module  
  0.000000000000118   472-512   Fibronectin type I module  
  0.000000000000157   231-274   Fibronectin type I module  
  0.000000000000464   94-139   Fibronectin type I module  
  0.00000000000109   185-228   Fibronectin type I module  
  0.00000000000127   2113-2156   Fibronectin type I module  
  0.00000000000301   50-91   Fibronectin type I module  
  0.00000000000366   142-182   Fibronectin type I module  
  0.0000000000144   2201-2242   Fibronectin type I module  
  0.000000000183   306-344   Fibronectin type I module  
ENSMUSP00000141128   0.000000921   655-739   VWC domain  
 
Weak hits:
ENSMUSP00000012152   0.000408   264-329   VWC domain  
ENSMUSP00000030985   0.000453   196-236   Fibronectin type I module  
ENSMUSP00000034911   0.000513   92-156   VWC domain  
ENSMUSP00000048334   0.0068   129-173   VWC domain  
ENSMUSP00000049941   0.000942   392-440   VWC domain  
ENSMUSP00000075224   0.0091   870-926   VWC domain  
ENSMUSP00000075945   0.00492   766-821   VWC domain  
ENSMUSP00000076003   0.000105   114-155   VWC domain  
ENSMUSP00000085907   0.000188   474-549   Fibronectin type I module  
  0.0251   416-478   VWC domain  
ENSMUSP00000103516   0.000523   42-91   Fibronectin type I module  
ENSMUSP00000109126   0.00659   129-173   VWC domain  
ENSMUSP00000109338   0.068   186-208   Fibronectin type I module  
ENSMUSP00000112783   0.000921   261-326   VWC domain  
ENSMUSP00000113506   0.000408   263-328   VWC domain  
ENSMUSP00000114271   0.00492   766-821   VWC domain  
ENSMUSP00000115071   0.000429   264-329   VWC domain  
ENSMUSP00000116456   0.0628   31-60   VWC domain  
ENSMUSP00000120760   0.00262   2-36   VWC domain  
ENSMUSP00000125014   0.00136   51-112   Fibronectin type I module  
ENSMUSP00000125205   0.00157   792-853   Fibronectin type I module  
  0.0136   703-744   VWC domain  
  0.0199   353-395   Fibronectin type I module  
ENSMUSP00000128057   0.0942   7-32   Fibronectin type I module  
ENSMUSP00000136207   0.0022   232-294   Fibronectin type I module  
ENSMUSP00000136475   0.00691   336-378   Fibronectin type I module  
ENSMUSP00000138652   0.068   186-208   Fibronectin type I module  
ENSMUSP00000140388   0.000555   351-399   VWC domain  
  0.0241   820-869   Fibronectin type I module  
ENSMUSP00000140642   0.000146   54-119   VWC domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   105027 105027
No Yes Homo sapiens 76_38 Human 383 107
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 76_3.1 Western gorilla 125 45
No Yes Pongo abelii 76_2 Sumatran orangutan 89 33
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 91 32
No Yes Papio anubis 76 Olive baboon 98 30
No Yes Macaca mulatta 76_1 Rhesus monkey 238 57
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 257 100
No Yes Otolemur garnettii 76_3 Small-eared galago 79 28
No Yes Microcebus murinus 76_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 76_5.0 Norway rat 125 42
No Yes Mus musculus 76_38 House mouse 258 68
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 87 32
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 73 31
No Yes Cavia porcellus 76_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 106 38
No Yes Ochotona princeps 76 American pika 63 25
No Yes Tupaia belangeri 76 Northern tree shrew 42 23
No Yes Sus scrofa 76_10.2 Pig 144 43
No Yes Bos taurus 76_3.1 Cattle 154 37
No Yes Ovis aries 76_3.1 Sheep 113 39
No Yes Vicugna pacos 76_1 Alpaca 44 21
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 76_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 76_1 Giant panda 110 42
No Yes Canis familiaris 76_3.1 Dog 144 52
No Yes Felis catus 76_6.2 Domestic cat 101 37
No Yes Equus caballus 76_2 Horse 146 47
No Yes Myotis lucifugus 76_2.0 Little brown bat 109 33
No Yes Pteropus vampyrus 76_1 Large flying fox 80 32
No Yes Sorex araneus 76_1 European shrew 36 20
No Yes Erinaceus europaeus 76 Western European hedgehog 39 18
No Yes Procavia capensis 76_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 76_3 African savanna elephant 110 42
No Yes Echinops telfairi 76 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 91 39
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 76_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 95 44
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 82 35
No Yes Ornithorhynchus anatinus 76_5 Platypus 85 41
No Yes Saccoglossus kowalevskii v3.0   266 96
No Yes Petromyzon marinus 76_7.0 Sea lamprey 47 24
No Yes Meleagris gallopavo 76_2 Turkey 65 39
No Yes Gallus gallus 76_4 Chicken 82 30
No Yes Anas platyrhynchos 76_1.0 Mallard 65 31
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 68 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 76 37
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 70 35
No Yes Anolis carolinensis 76_2.0 Green anole 96 36
No Yes Xenopus laevis African clawed frog 225 64
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 162 50
No Yes Latimeria chalumnae 76_1 Coelacanth 114 49
No Yes Lepisosteus oculatus 76 Spotted gar 174 58
No Yes Gadus morhua 76_1 Atlantic cod 84 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 190 59
No Yes Takifugu rubripes 76_4 Torafugu 363 145
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 104 55
No Yes Oryzias latipes 76_1 Japanese medaka 110 48
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 106 39
No Yes Poecilia formosa 76 Amazon molly 113 45
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 161 55
No Yes Astyanax mexicanus 76 Mexican tetra 105 46
No Yes Danio rerio 76_9 Zebrafish 195 80
No Yes Oikopleura dioica   11 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 117 45
No Yes Ciona intestinalis 76 Vase tunicate 60 24
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 124 36
No Yes Adineta vaga   24 5
No Yes Octopus bimaculoides 280   555 83
No Yes Crassostrea gigas 22 Pacific oyster 121 40
No Yes Lottia gigantea Owl limpet 84 33
No Yes Helobdella robusta   7 5
No Yes Capitella sp. I   29 15
No Yes Danaus plexippus OGS1.0 Monarch butterfly 23 9
No Yes Heliconius melpomene Postman butterfly 20 7
No Yes Bombyx mori Domestic silkworm 16 10
No Yes Nasonia vitripennis Jewel wasp 27 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 42 13
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 21 8
No Yes Linepithema humile v1.1 Argentine ant 21 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 19 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 19 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 24 8
No Yes Atta cephalotes v1.1   22 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 24 8
No Yes Lucilia cuprina Australian sheep blowfly 23 9
No Yes Drosophila grimshawi 1.3   26 13
No Yes Drosophila willistoni 1.3   27 13
No Yes Drosophila pseudoobscura 2.13   23 13
No Yes Drosophila persimilis 1.3   25 11
No Yes Drosophila suzukii   23 9
No Yes Drosophila yakuba 1.3   25 13
No Yes Drosophila simulans 1.3   20 11
No Yes Drosophila sechellia 1.3   25 13
No Yes Drosophila melanogaster 76_5 Fruit fly 51 24
No Yes Drosophila erecta 1.3   27 13
No Yes Drosophila ananassae 1.3   27 14
No Yes Drosophila virilis 1.2   26 12
No Yes Drosophila mojavensis 1.3   28 14
No Yes Megaselia scalaris 22   7 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 23 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 29 15
No Yes Anopheles darlingi 22 American malaria mosquito 17 12
No Yes Anopheles gambiae 49_3j African malaria mosquito 24 11
No Yes Tribolium castaneum 3.0 Red flour beetle 29 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 25 11
No Yes Acyrthosiphon pisum Pea aphid 18 6
No Yes Rhodnius prolixus 22   29 10
No Yes Daphnia pulex Common water flea 30 18
No Yes Strigamia maritima 22   34 17
No Yes Sarcoptes scabiei   13 5
No Yes Tetranychus urticae Two-spotted spider mite 31 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 25 9
No Yes Pristionchus pacificus   9 4
No Yes Meloidogyne incognita Southern root-knot nematode 5 3
No Yes Meloidogyne hapla   7 2
No Yes Onchocerca volvulus 22   7 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 7 2
No Yes Caenorhabditis japonica   7 2
No Yes Caenorhabditis brenneri   6 2
No Yes Caenorhabditis remanei   7 3
No Yes Caenorhabditis elegans 76_235 Roundworm 31 8
No Yes Caenorhabditis briggsae 2   6 2
No Yes Trichinella spiralis 22   10 5
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 39 21
No Yes Acropora digitifera v1.0   23 15
No Yes Nematostella vectensis 1.0 Starlet sea anemone 18 12
No Yes Hydra vulgaris   10 6
No Yes Amphimedon queenslandica   7 4
No Yes Trichoplax adhaerens   30 4
No Yes Sorangium cellulosum 'So ce 56'   2 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 153 60
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 28 19
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 25 12
No Yes Ascaris suum Victoria/Ghent Pig roundworm 10 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 24 6
No Yes Sorangium cellulosum So0157-2   4 1
No Yes Homo sapiens 75_37 (old version GRC) Human 363 114
No Yes Homo sapiens (NCBI version) Human 201 59
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 95 33
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 8 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 6 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 1
No Yes Homo sapiens 69_37 Human 84 35
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 69_3.1 Western gorilla 102 38
No Yes Pongo abelii 69_2 Sumatran orangutan 73 30
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 79 31
No Yes Macaca mulatta 69_1 Rhesus monkey 73 26
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 91 36
No Yes Otolemur garnettii 69_3 Small-eared galago 79 28
No Yes Microcebus murinus 69_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 69_3.4 Norway rat 90 34
No Yes Mus musculus 69_38 House mouse 94 33
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 81 30
No Yes Cavia porcellus 69_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 69_2 Rabbit 91 34
No Yes Ochotona princeps 69 American pika 63 25
No Yes Tupaia belangeri 69 Northern tree shrew 42 23
No Yes Sus scrofa 69_10.2 Pig 84 29
No Yes Bos taurus 69_3.1 Cattle 92 32
No Yes Vicugna pacos 69_1 Alpaca 44 21
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 69_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 69_1 Giant panda 94 37
No Yes Canis familiaris 69_3.1 Dog 101 38
No Yes Felis catus 69 Domestic cat 48 24
No Yes Equus caballus 69_2 Horse 93 33
No Yes Myotis lucifugus 69_2.0 Little brown bat 71 28
No Yes Pteropus vampyrus 69_1 Large flying fox 80 32
No Yes Sorex araneus 69_1 European shrew 36 20
No Yes Erinaceus europaeus 69 Western European hedgehog 39 18
No Yes Procavia capensis 69_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 69_3 African savanna elephant 87 31
No Yes Echinops telfairi 69 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 47 26
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 69_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 85 36
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 80 33
No Yes Ornithorhynchus anatinus 69_5 Platypus 75 39
No Yes Petromyzon marinus 69_7.0 Sea lamprey 42 19
No Yes Meleagris gallopavo 69_2 Turkey 58 32
No Yes Gallus gallus 69_2 Chicken 62 30
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 66 32
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 65 32
No Yes Anolis carolinensis 69_2.0 Green anole 92 36
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 102 39
No Yes Latimeria chalumnae 69_1 Coelacanth 101 42
No Yes Gadus morhua 69_1 Atlantic cod 80 35
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 95 34
No Yes Takifugu rubripes 69_4 Torafugu 97 36
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 87 40
No Yes Oryzias latipes 69_1 Japanese medaka 91 35
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 106 39
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 105 41
No Yes Danio rerio 69_9 Zebrafish 120 51
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 52 18
No Yes Ciona intestinalis 69 Vase tunicate 49 21
No Yes Drosophila melanogaster 69_5 Fruit fly 26 12
No Yes Caenorhabditis elegans 69_215 Roundworm 7 2
No Yes NCBI 2017_08 genome   52215 16311
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 2
No Yes STRING v9.0.5 (STRING)   2925 1172
No Yes Uniprot 2018_03 genome   27002 10540
No Yes Global Ocean Sampling Expedition (GOS)   4 3
No Yes PDB chains (SCOP 1.75) (PDB)   13 9
No Yes Protein Data Bank (all PDB sequenc)   83 50
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   179 179
No Yes TargetDB (Targets)   39 21
No Yes UniProt viral sequences (Viral)   19 19

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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