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  Home > Genomes > Monodelphis domestica 76_5 > FnI-like domain domains


FnI-like domain superfamily domain assignments
in
Monodelphis domestica 76_5

Assignment details

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Monodelphis domestica 76_5 has 82 significant domains in 35 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMODP00000000037   0.0000000000000146   158-227   VWC domain  
  0.000000000847   285-360   VWC domain  
  0.0000001   100-166   VWC domain  
  0.00000126   237-291   VWC domain  
  0.0000136   63-107   VWC domain  
ENSMODP00000000341   0.00000000194   94-164   Fibronectin type I module  
ENSMODP00000000814   0.000000000000241   318-376   VWC domain  
ENSMODP00000001326   0.00000068   119-190   Fibronectin type I module  
ENSMODP00000003423   0.0000000921   2930-2986   VWC domain  
  0.00000565   4938-5003   VWC domain  
  0.0000105   4058-4125   Fibronectin type I module  
  0.0000178   972-1019   Fibronectin type I module  
  0.0000387   4158-4219   VWC domain  
  0.00241   1965-2029   Fibronectin type I module  
  0.0303   526-566   Fibronectin type I module  
ENSMODP00000004260   0.0000984   149-187   Fibronectin type I module  
ENSMODP00000006044   0.0000126   852-911   VWC domain  
ENSMODP00000007157   0.000000000000555   321-379   VWC domain  
ENSMODP00000008408   0.0000565   858-898   VWC domain  
  0.000146   392-432   VWC domain  
  0.0502   2705-2766   Fibronectin type I module  
ENSMODP00000008898   4.01e-16   250-317   VWC domain  
  0.00000000000715   109-176   VWC domain  
  0.0000000000075   31-97   VWC domain  
ENSMODP00000011533   0.0000000000188   265-331   VWC domain  
  0.00000000868   680-752   VWC domain  
  0.0000157   332-389   VWC domain  
  0.0000596   622-685   VWC domain  
  0.0596   763-800   VWC domain  
ENSMODP00000011628   0.000000000146   222-281   VWC domain  
  0.000282   159-219   Fibronectin type I module  
ENSMODP00000012360   0.00000000000743   1396-1455   VWC domain  
ENSMODP00000012804   6.91e-20   32-80   Fibronectin type I module  
ENSMODP00000013550   0.0000000000544   1-59   VWC domain  
ENSMODP00000014217   0.00000000000000649   38-98   VWC domain  
ENSMODP00000014976   0.000000000000103   31-90   VWC domain  
ENSMODP00000017876   0.00000000000146   1350-1407   VWC domain  
ENSMODP00000019221   0.000000000000067   822-882   VWC domain  
  0.000000000000544   404-462   VWC domain  
  0.00000000000785   684-741   VWC domain  
  0.0000000000649   611-670   VWC domain  
  0.000000000377   761-815   VWC domain  
  0.0000000209   323-396   VWC domain  
ENSMODP00000019479   0.0000000000000157   2134-2177   Fibronectin type I module  
  0.0000000000000262   520-564   Fibronectin type I module  
  0.0000000000000404   562-608   Fibronectin type I module  
  0.00000000000012   235-279   Fibronectin type I module  
  0.000000000000144   472-513   Fibronectin type I module  
  0.000000000000222   2089-2132   Fibronectin type I module  
  0.000000000000236   98-143   Fibronectin type I module  
  0.000000000000484   188-234   Fibronectin type I module  
  0.00000000000314   54-95   Fibronectin type I module  
  0.00000000000366   146-186   Fibronectin type I module  
  0.0000000000249   2177-2218   Fibronectin type I module  
  0.000000000222   311-349   Fibronectin type I module  
ENSMODP00000020253   0.000000251   98-164   Fibronectin type I module  
ENSMODP00000021904   0.0000000628   95-166   Fibronectin type I module  
ENSMODP00000022504   0.0000743   805-846   VWC domain  
  0.000126   2400-2475   VWC domain  
  0.0209   678-718   VWC domain  
ENSMODP00000022725   0.0000659   227-268   VWC domain  
ENSMODP00000023109   0.00000000115   271-335   VWC domain  
  0.00000000607   692-764   VWC domain  
  0.0555   336-400   Fibronectin type I module  
ENSMODP00000023219   0.00000418   269-317   VWC domain  
ENSMODP00000023432   0.0000827   93-149   VWC domain  
ENSMODP00000025452   0.0000000000314   390-449   VWC domain  
  0.0000000000481   500-569   VWC domain  
  0.0000000157   442-505   VWC domain  
ENSMODP00000025620   0.0000115   4-52   Fibronectin type I module  
  0.000282   471-517   VWC domain  
ENSMODP00000026029   0.00000000000586   153-219   VWC domain  
  0.0000000000105   220-281   VWC domain  
  0.0000000000439   82-155   VWC domain  
  0.000000000115   278-345   VWC domain  
  0.00000000638   27-89   VWC domain  
  0.0000000241   343-410   VWC domain  
ENSMODP00000027285   0.000046   317-365   VWC domain  
  0.000209   793-833   VWC domain  
ENSMODP00000027287   0.000000241   93-175   VWC domain  
  0.0167   175-239   VWC domain  
ENSMODP00000028532   0.00001   850-909   VWC domain  
ENSMODP00000034081   0.000000628   124-189   Fibronectin type I module  
ENSMODP00000038749   0.0000000000000314   382-451   VWC domain  
  0.00000000000209   323-389   VWC domain  
  0.00000000000345   500-565   VWC domain  
  0.0000000000335   272-329   VWC domain  
  0.0000000000753   620-674   VWC domain  
  0.0000000000827   223-270   VWC domain  
  0.00000000586   441-503   VWC domain  
  0.00000000806   153-210   VWC domain  
  0.0000000209   677-721   Fibronectin type I module  
  0.00000502   111-148   VWC domain  
  0.0000293   570-617   VWC domain  
 
Weak hits:
ENSMODP00000005028   0.00418   3-36   VWC domain  
ENSMODP00000005582   0.0544   126-160   Fibronectin type I module  
ENSMODP00000008695   0.000743   11-60   Fibronectin type I module  
ENSMODP00000011044   0.000408   98-155   VWC domain  
  0.0209   150-222   Fibronectin type I module  
ENSMODP00000017141   0.000241   742-797   Fibronectin type I module  
ENSMODP00000017231   0.00513   231-279   Fibronectin type I module  
ENSMODP00000019511   0.00105   51-112   Fibronectin type I module  
ENSMODP00000025640   0.0387   800-840   VWC domain  
  0.0753   690-746   Fibronectin type I module  
ENSMODP00000027290   0.000418   1517-1574   Fibronectin type I module  
  0.0157   1442-1504   VWC domain  
ENSMODP00000038561   0.0408   35-71   Fibronectin type I module  
ENSMODP00000038562   0.0732   37-84   Fibronectin type I module  
ENSMODP00000038563   0.0241   35-85   Fibronectin type I module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   105027 105027
No Yes Homo sapiens 76_38 Human 383 107
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 76_3.1 Western gorilla 125 45
No Yes Pongo abelii 76_2 Sumatran orangutan 89 33
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 91 32
No Yes Papio anubis 76 Olive baboon 98 30
No Yes Macaca mulatta 76_1 Rhesus monkey 238 57
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 257 100
No Yes Otolemur garnettii 76_3 Small-eared galago 79 28
No Yes Microcebus murinus 76_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 76_5.0 Norway rat 125 42
No Yes Mus musculus 76_38 House mouse 258 68
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 87 32
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 73 31
No Yes Cavia porcellus 76_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 106 38
No Yes Ochotona princeps 76 American pika 63 25
No Yes Tupaia belangeri 76 Northern tree shrew 42 23
No Yes Sus scrofa 76_10.2 Pig 144 43
No Yes Bos taurus 76_3.1 Cattle 154 37
No Yes Ovis aries 76_3.1 Sheep 113 39
No Yes Vicugna pacos 76_1 Alpaca 44 21
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 76_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 76_1 Giant panda 110 42
No Yes Canis familiaris 76_3.1 Dog 144 52
No Yes Felis catus 76_6.2 Domestic cat 101 37
No Yes Equus caballus 76_2 Horse 146 47
No Yes Myotis lucifugus 76_2.0 Little brown bat 109 33
No Yes Pteropus vampyrus 76_1 Large flying fox 80 32
No Yes Sorex araneus 76_1 European shrew 36 20
No Yes Erinaceus europaeus 76 Western European hedgehog 39 18
No Yes Procavia capensis 76_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 76_3 African savanna elephant 110 42
No Yes Echinops telfairi 76 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 91 39
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 76_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 95 44
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 82 35
No Yes Ornithorhynchus anatinus 76_5 Platypus 85 41
No Yes Saccoglossus kowalevskii v3.0   266 96
No Yes Petromyzon marinus 76_7.0 Sea lamprey 47 24
No Yes Meleagris gallopavo 76_2 Turkey 65 39
No Yes Gallus gallus 76_4 Chicken 82 30
No Yes Anas platyrhynchos 76_1.0 Mallard 65 31
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 68 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 76 37
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 70 35
No Yes Anolis carolinensis 76_2.0 Green anole 96 36
No Yes Xenopus laevis African clawed frog 225 64
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 162 50
No Yes Latimeria chalumnae 76_1 Coelacanth 114 49
No Yes Lepisosteus oculatus 76 Spotted gar 174 58
No Yes Gadus morhua 76_1 Atlantic cod 84 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 190 59
No Yes Takifugu rubripes 76_4 Torafugu 363 145
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 104 55
No Yes Oryzias latipes 76_1 Japanese medaka 110 48
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 106 39
No Yes Poecilia formosa 76 Amazon molly 113 45
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 161 55
No Yes Astyanax mexicanus 76 Mexican tetra 105 46
No Yes Danio rerio 76_9 Zebrafish 195 80
No Yes Oikopleura dioica   11 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 117 45
No Yes Ciona intestinalis 76 Vase tunicate 60 24
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 124 36
No Yes Adineta vaga   24 5
No Yes Octopus bimaculoides 280   555 83
No Yes Crassostrea gigas 22 Pacific oyster 121 40
No Yes Lottia gigantea Owl limpet 84 33
No Yes Helobdella robusta   7 5
No Yes Capitella sp. I   29 15
No Yes Danaus plexippus OGS1.0 Monarch butterfly 23 9
No Yes Heliconius melpomene Postman butterfly 20 7
No Yes Bombyx mori Domestic silkworm 16 10
No Yes Nasonia vitripennis Jewel wasp 27 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 42 13
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 21 8
No Yes Linepithema humile v1.1 Argentine ant 21 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 19 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 19 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 24 8
No Yes Atta cephalotes v1.1   22 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 24 8
No Yes Lucilia cuprina Australian sheep blowfly 23 9
No Yes Drosophila grimshawi 1.3   26 13
No Yes Drosophila willistoni 1.3   27 13
No Yes Drosophila pseudoobscura 2.13   23 13
No Yes Drosophila persimilis 1.3   25 11
No Yes Drosophila suzukii   23 9
No Yes Drosophila yakuba 1.3   25 13
No Yes Drosophila simulans 1.3   20 11
No Yes Drosophila sechellia 1.3   25 13
No Yes Drosophila melanogaster 76_5 Fruit fly 51 24
No Yes Drosophila erecta 1.3   27 13
No Yes Drosophila ananassae 1.3   27 14
No Yes Drosophila virilis 1.2   26 12
No Yes Drosophila mojavensis 1.3   28 14
No Yes Megaselia scalaris 22   7 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 23 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 29 15
No Yes Anopheles darlingi 22 American malaria mosquito 17 12
No Yes Anopheles gambiae 49_3j African malaria mosquito 24 11
No Yes Tribolium castaneum 3.0 Red flour beetle 29 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 25 11
No Yes Acyrthosiphon pisum Pea aphid 18 6
No Yes Rhodnius prolixus 22   29 10
No Yes Daphnia pulex Common water flea 30 18
No Yes Strigamia maritima 22   34 17
No Yes Sarcoptes scabiei   13 5
No Yes Tetranychus urticae Two-spotted spider mite 31 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 25 9
No Yes Pristionchus pacificus   9 4
No Yes Meloidogyne incognita Southern root-knot nematode 5 3
No Yes Meloidogyne hapla   7 2
No Yes Onchocerca volvulus 22   7 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 7 2
No Yes Caenorhabditis japonica   7 2
No Yes Caenorhabditis brenneri   6 2
No Yes Caenorhabditis remanei   7 3
No Yes Caenorhabditis elegans 76_235 Roundworm 31 8
No Yes Caenorhabditis briggsae 2   6 2
No Yes Trichinella spiralis 22   10 5
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 39 21
No Yes Acropora digitifera v1.0   23 15
No Yes Nematostella vectensis 1.0 Starlet sea anemone 18 12
No Yes Hydra vulgaris   10 6
No Yes Amphimedon queenslandica   7 4
No Yes Trichoplax adhaerens   30 4
No Yes Sorangium cellulosum 'So ce 56'   2 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 153 60
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 28 19
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 25 12
No Yes Ascaris suum Victoria/Ghent Pig roundworm 10 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 24 6
No Yes Sorangium cellulosum So0157-2   4 1
No Yes Homo sapiens 75_37 (old version GRC) Human 363 114
No Yes Homo sapiens (NCBI version) Human 201 59
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 95 33
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 8 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 6 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 1
No Yes Homo sapiens 69_37 Human 84 35
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 69_3.1 Western gorilla 102 38
No Yes Pongo abelii 69_2 Sumatran orangutan 73 30
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 79 31
No Yes Macaca mulatta 69_1 Rhesus monkey 73 26
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 91 36
No Yes Otolemur garnettii 69_3 Small-eared galago 79 28
No Yes Microcebus murinus 69_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 69_3.4 Norway rat 90 34
No Yes Mus musculus 69_38 House mouse 94 33
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 81 30
No Yes Cavia porcellus 69_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 69_2 Rabbit 91 34
No Yes Ochotona princeps 69 American pika 63 25
No Yes Tupaia belangeri 69 Northern tree shrew 42 23
No Yes Sus scrofa 69_10.2 Pig 84 29
No Yes Bos taurus 69_3.1 Cattle 92 32
No Yes Vicugna pacos 69_1 Alpaca 44 21
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 69_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 69_1 Giant panda 94 37
No Yes Canis familiaris 69_3.1 Dog 101 38
No Yes Felis catus 69 Domestic cat 48 24
No Yes Equus caballus 69_2 Horse 93 33
No Yes Myotis lucifugus 69_2.0 Little brown bat 71 28
No Yes Pteropus vampyrus 69_1 Large flying fox 80 32
No Yes Sorex araneus 69_1 European shrew 36 20
No Yes Erinaceus europaeus 69 Western European hedgehog 39 18
No Yes Procavia capensis 69_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 69_3 African savanna elephant 87 31
No Yes Echinops telfairi 69 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 47 26
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 69_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 85 36
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 80 33
No Yes Ornithorhynchus anatinus 69_5 Platypus 75 39
No Yes Petromyzon marinus 69_7.0 Sea lamprey 42 19
No Yes Meleagris gallopavo 69_2 Turkey 58 32
No Yes Gallus gallus 69_2 Chicken 62 30
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 66 32
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 65 32
No Yes Anolis carolinensis 69_2.0 Green anole 92 36
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 102 39
No Yes Latimeria chalumnae 69_1 Coelacanth 101 42
No Yes Gadus morhua 69_1 Atlantic cod 80 35
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 95 34
No Yes Takifugu rubripes 69_4 Torafugu 97 36
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 87 40
No Yes Oryzias latipes 69_1 Japanese medaka 91 35
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 106 39
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 105 41
No Yes Danio rerio 69_9 Zebrafish 120 51
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 52 18
No Yes Ciona intestinalis 69 Vase tunicate 49 21
No Yes Drosophila melanogaster 69_5 Fruit fly 26 12
No Yes Caenorhabditis elegans 69_215 Roundworm 7 2
No Yes NCBI 2017_08 genome   52215 16311
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 2
No Yes STRING v9.0.5 (STRING)   2925 1172
No Yes Uniprot 2018_03 genome   27002 10540
No Yes Global Ocean Sampling Expedition (GOS)   4 3
No Yes PDB chains (SCOP 1.75) (PDB)   13 9
No Yes Protein Data Bank (all PDB sequenc)   83 50
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   179 179
No Yes TargetDB (Targets)   39 21
No Yes UniProt viral sequences (Viral)   19 19

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.