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  Home > Genomes > Macaca mulatta 76_1 > FnI-like domain domains


FnI-like domain superfamily domain assignments
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Macaca mulatta 76_1

Assignment details

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Macaca mulatta 76_1 has 238 significant domains in 57 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000001955   0.000000000000115   39-97   VWC domain  
ENSMMUP00000003452   0.00000000000199   146-217   VWC domain  
  0.00000000000282   81-154   VWC domain  
  0.0000000000544   219-280   VWC domain  
  0.0000000009   272-344   VWC domain  
  0.0000000045   26-88   VWC domain  
  0.000000617   367-422   VWC domain  
ENSMMUP00000003454   0.000000000000209   146-217   VWC domain  
  0.000000000000282   81-154   VWC domain  
  0.00000000000335   219-280   VWC domain  
  0.000000000068   272-344   VWC domain  
  0.000000000544   26-88   VWC domain  
  0.000000157   367-421   VWC domain  
ENSMMUP00000003459   0.000000000000335   146-217   VWC domain  
  0.00000000000046   81-154   VWC domain  
  0.00000000000146   210-280   VWC domain  
  0.000000000167   278-344   VWC domain  
  0.000000000816   26-88   VWC domain  
  0.000000209   367-422   VWC domain  
ENSMMUP00000003460   0.00000000000408   81-154   VWC domain  
  0.0000000000377   152-217   VWC domain  
  0.0000000000868   219-280   VWC domain  
  0.000000000952   272-344   VWC domain  
  0.00000000659   26-88   VWC domain  
  0.000000701   367-422   VWC domain  
ENSMMUP00000003618   0.00000000000272   678-744   VWC domain  
  0.000000000157   493-561   VWC domain  
  0.000000000429   384-443   VWC domain  
  0.00000000046   627-686   VWC domain  
  0.000000022   567-625   VWC domain  
  0.0000000398   434-495   VWC domain  
ENSMMUP00000003620   0.00000000000199   395-461   VWC domain  
  0.000000000115   210-278   VWC domain  
  0.000000000126   345-404   VWC domain  
  0.000000000303   101-160   VWC domain  
  0.0000000146   284-342   VWC domain  
  0.0000000251   151-212   VWC domain  
ENSMMUP00000003914   0.0000262   228-269   VWC domain  
ENSMMUP00000005256   0.000000314   224-300   VWC domain  
ENSMMUP00000006172   0.00000000000000439   101-158   VWC domain  
ENSMMUP00000007443   0.0000356   108-173   Fibronectin type I module  
ENSMMUP00000007925   0.000000000000314   317-374   VWC domain  
ENSMMUP00000008299   0.00000000000000251   476-545   VWC domain  
  0.0000000000000282   303-368   VWC domain  
  0.000000000000575   184-253   VWC domain  
  0.00000000000136   592-659   VWC domain  
  0.00000000000188   134-191   VWC domain  
  0.00000000000555   244-311   VWC domain  
  0.000000000067   422-483   VWC domain  
  0.00000000157   716-781   VWC domain  
  0.00000000513   361-416   Fibronectin type I module  
  0.0000000126   535-596   VWC domain  
  0.00000356   90-130   VWC domain  
  0.0000167   674-722   VWC domain  
ENSMMUP00000009881   0.0000000000000146   703-764   VWC domain  
  0.0000000586   49-127   VWC domain  
  0.000000429   782-851   VWC domain  
  0.0000136   870-933   VWC domain  
ENSMMUP00000009883   0.0000000000000136   663-724   VWC domain  
  0.0000000555   49-127   VWC domain  
  0.000000408   742-811   VWC domain  
  0.0000126   830-893   VWC domain  
ENSMMUP00000009884   0.00000000000000659   416-477   VWC domain  
ENSMMUP00000011881   0.000000000023   267-333   VWC domain  
  0.00000000471   635-707   VWC domain  
  0.00000492   334-391   VWC domain  
  0.0000921   577-640   VWC domain  
  0.00816   718-755   VWC domain  
ENSMMUP00000011884   0.00000000126   148-220   VWC domain  
  0.00994   231-268   VWC domain  
ENSMMUP00000013337   0.00000000234   115-185   VWC domain  
ENSMMUP00000013901   0.00000000319   6-71   VWC domain  
ENSMMUP00000015019   0.000000000000136   26-91   VWC domain  
ENSMMUP00000016182   0.00000000000000811   647-693   Fibronectin type I module  
  0.000000000000017   2217-2260   Fibronectin type I module  
  0.0000000000000301   605-649   Fibronectin type I module  
  0.000000000000126   320-364   Fibronectin type I module  
  0.000000000000157   557-598   Fibronectin type I module  
  0.000000000000284   183-228   Fibronectin type I module  
  0.000000000000458   2172-2215   Fibronectin type I module  
  0.000000000000602   274-317   Fibronectin type I module  
  0.00000000000275   139-180   Fibronectin type I module  
  0.0000000000034   231-271   Fibronectin type I module  
  0.0000000000144   2260-2301   Fibronectin type I module  
  0.00000000034   396-434   Fibronectin type I module  
ENSMMUP00000016183   0.00000000000000798   557-603   Fibronectin type I module  
  0.000000000000017   2192-2235   Fibronectin type I module  
  0.0000000000000301   515-559   Fibronectin type I module  
  0.000000000000124   230-274   Fibronectin type I module  
  0.000000000000157   467-508   Fibronectin type I module  
  0.000000000000284   93-138   Fibronectin type I module  
  0.000000000000445   2147-2190   Fibronectin type I module  
  0.000000000000589   184-227   Fibronectin type I module  
  0.00000000000275   49-90   Fibronectin type I module  
  0.00000000000327   141-181   Fibronectin type I module  
  0.0000000000144   2235-2276   Fibronectin type I module  
  0.00000000034   306-344   Fibronectin type I module  
ENSMMUP00000016184   0.00000000000000824   557-603   Fibronectin type I module  
  0.000000000000017   2248-2291   Fibronectin type I module  
  0.0000000000000301   515-559   Fibronectin type I module  
  0.000000000000127   230-274   Fibronectin type I module  
  0.00000000000017   472-511   Fibronectin type I module  
  0.000000000000284   93-138   Fibronectin type I module  
  0.000000000000458   2203-2246   Fibronectin type I module  
  0.000000000000602   184-227   Fibronectin type I module  
  0.00000000000288   49-90   Fibronectin type I module  
  0.0000000000034   141-181   Fibronectin type I module  
  0.0000000000157   2291-2332   Fibronectin type I module  
  0.00000000034   306-344   Fibronectin type I module  
ENSMMUP00000016186   0.00000000000000785   557-603   Fibronectin type I module  
  0.000000000000017   2158-2201   Fibronectin type I module  
  0.0000000000000288   515-559   Fibronectin type I module  
  0.000000000000122   230-274   Fibronectin type I module  
  0.000000000000157   467-508   Fibronectin type I module  
  0.000000000000269   93-138   Fibronectin type I module  
  0.000000000000445   2113-2156   Fibronectin type I module  
  0.000000000000576   184-227   Fibronectin type I module  
  0.00000000000275   49-90   Fibronectin type I module  
  0.00000000000327   141-181   Fibronectin type I module  
  0.0000000000144   2201-2242   Fibronectin type I module  
  0.000000000327   306-344   Fibronectin type I module  
ENSMMUP00000016193   0.0000000000000068   557-603   Fibronectin type I module  
  0.0000000000000262   515-559   Fibronectin type I module  
  0.000000000000106   230-274   Fibronectin type I module  
  0.000000000000144   472-511   Fibronectin type I module  
  0.000000000000239   93-138   Fibronectin type I module  
  0.00000000000051   184-227   Fibronectin type I module  
  0.00000000000236   49-90   Fibronectin type I module  
  0.00000000000288   141-181   Fibronectin type I module  
  0.000000000288   306-344   Fibronectin type I module  
ENSMMUP00000016195   0.00000000000000759   557-603   Fibronectin type I module  
  0.0000000000000249   2072-2116   Fibronectin type I module  
  0.0000000000000288   515-559   Fibronectin type I module  
  0.000000000000116   230-274   Fibronectin type I module  
  0.000000000000157   472-511   Fibronectin type I module  
  0.000000000000254   93-138   Fibronectin type I module  
  0.00000000000055   184-227   Fibronectin type I module  
  0.00000000000262   49-90   Fibronectin type I module  
  0.00000000000314   141-181   Fibronectin type I module  
  0.0000000000144   2116-2157   Fibronectin type I module  
  0.000000000314   306-344   Fibronectin type I module  
ENSMMUP00000016197   0.00000000000000746   557-603   Fibronectin type I module  
  0.0000000000000157   2046-2089   Fibronectin type I module  
  0.0000000000000275   515-559   Fibronectin type I module  
  0.000000000000115   230-274   Fibronectin type I module  
  0.000000000000144   467-508   Fibronectin type I module  
  0.000000000000254   93-138   Fibronectin type I module  
  0.000000000000419   2001-2044   Fibronectin type I module  
  0.00000000000055   184-227   Fibronectin type I module  
  0.00000000000262   49-90   Fibronectin type I module  
  0.00000000000314   141-181   Fibronectin type I module  
  0.0000000000131   2089-2130   Fibronectin type I module  
  0.000000000314   306-344   Fibronectin type I module  
ENSMMUP00000016225   0.00000000000000864   557-603   Fibronectin type I module  
  0.0000000000000183   2339-2382   Fibronectin type I module  
  0.0000000000000314   515-559   Fibronectin type I module  
  0.000000000000131   230-274   Fibronectin type I module  
  0.00000000000017   467-508   Fibronectin type I module  
  0.000000000000299   93-138   Fibronectin type I module  
  0.000000000000484   2294-2337   Fibronectin type I module  
  0.000000000000628   184-227   Fibronectin type I module  
  0.00000000000301   49-90   Fibronectin type I module  
  0.00000000000353   141-181   Fibronectin type I module  
  0.0000000000157   2382-2423   Fibronectin type I module  
  0.000000000353   306-344   Fibronectin type I module  
ENSMMUP00000016228   0.0000000000000017   557-603   Fibronectin type I module  
  0.00000000000000654   515-559   Fibronectin type I module  
  0.0000000000000275   230-274   Fibronectin type I module  
  0.0000000000000353   467-508   Fibronectin type I module  
  0.0000000000000536   93-138   Fibronectin type I module  
  0.000000000000131   184-227   Fibronectin type I module  
  0.000000000000615   49-90   Fibronectin type I module  
  0.000000000000733   141-181   Fibronectin type I module  
  0.0000000000746   306-344   Fibronectin type I module  
ENSMMUP00000016231   0.0000000000000068   557-603   Fibronectin type I module  
  0.0000000000000144   1871-1914   Fibronectin type I module  
  0.0000000000000249   515-559   Fibronectin type I module  
  0.000000000000105   230-274   Fibronectin type I module  
  0.000000000000131   467-508   Fibronectin type I module  
  0.000000000000239   93-138   Fibronectin type I module  
  0.000000000000379   1826-1869   Fibronectin type I module  
  0.000000000000497   184-227   Fibronectin type I module  
  0.00000000000236   49-90   Fibronectin type I module  
  0.00000000000275   141-181   Fibronectin type I module  
  0.0000000000124   1914-1955   Fibronectin type I module  
  0.000000000288   306-344   Fibronectin type I module  
ENSMMUP00000017338   0.00000000314   42-111   Fibronectin type I module  
ENSMMUP00000017340   0.0000000000523   23-92   Fibronectin type I module  
ENSMMUP00000018593   0.000000000523   6-70   Fibronectin type I module  
ENSMMUP00000021916   0.00000000000366   104-171   VWC domain  
  0.00000000000454   248-315   VWC domain  
  0.00000000023   26-92   VWC domain  
ENSMMUP00000022665   0.0000000000000126   157-226   VWC domain  
  0.00000000345   284-359   VWC domain  
  0.000000303   99-165   VWC domain  
  0.00000607   62-106   VWC domain  
  0.0000178   236-290   VWC domain  
ENSMMUP00000022735   0.00000000115   268-332   VWC domain  
  0.00000000607   688-760   VWC domain  
  0.000534   333-397   VWC domain  
ENSMMUP00000026025   0.000000000000136   148-206   VWC domain  
ENSMMUP00000027171   3.56e-16   230-296   VWC domain  
  0.00000000000628   89-156   VWC domain  
  0.0000000000105   12-77   VWC domain  
ENSMMUP00000028032   0.00000000000126   30-90   VWC domain  
ENSMMUP00000028033   0.00000000000167   30-90   VWC domain  
ENSMMUP00000028041   0.00000000000000398   41-100   VWC domain  
ENSMMUP00000028044   0.0000000000000178   8-66   VWC domain  
ENSMMUP00000030152   0.0000199   827-895   VWC domain  
  0.0000377   2572-2647   VWC domain  
  0.000178   2420-2496   VWC domain  
  0.00293   348-387   VWC domain  
  0.00555   699-740   VWC domain  
ENSMMUP00000031109   0.0000000000000921   318-376   VWC domain  
ENSMMUP00000033023   0.0000513   132-173   VWC domain  
ENSMMUP00000033024   0.0000534   132-173   VWC domain  
ENSMMUP00000035232   0.00000000000408   81-154   VWC domain  
  0.0000000000377   152-217   VWC domain  
  0.0000000000868   219-280   VWC domain  
  0.000000000952   272-344   VWC domain  
  0.00000000659   26-88   VWC domain  
  0.000000701   367-422   VWC domain  
ENSMMUP00000036832   0.00000000000283   12-77   VWC domain  
  0.0000288   89-131   Fibronectin type I module  
ENSMMUP00000036833   3.14e-16   230-296   VWC domain  
  0.00000000000565   89-156   VWC domain  
  0.00000000000963   12-77   VWC domain  
ENSMMUP00000036834   0.00000000000000101   134-200   VWC domain  
  0.00000000858   4-60   VWC domain  
ENSMMUP00000036835   0.0000000000146   81-148   VWC domain  
  0.0000000000167   4-69   VWC domain  
ENSMMUP00000037034   0.0000000000178   267-333   VWC domain  
  0.00000000429   682-754   VWC domain  
  0.00000732   334-391   VWC domain  
  0.00879   765-802   VWC domain  
ENSMMUP00000037035   0.000000000023   295-361   VWC domain  
  0.00000000617   710-782   VWC domain  
  0.00000565   362-419   VWC domain  
  0.00314   652-715   VWC domain  
  0.0091   793-830   VWC domain  
ENSMMUP00000039922   0.00000000115   267-331   VWC domain  
  0.00000000555   687-759   VWC domain  
  0.000418   332-396   VWC domain  
ENSMMUP00000039924   0.00000000115   268-332   VWC domain  
  0.00000000607   688-760   VWC domain  
  0.000534   333-397   VWC domain  
ENSMMUP00000040872   0.00000000000303   114-181   VWC domain  
  0.00000000000471   258-325   VWC domain  
  0.00000000018   35-102   VWC domain  
 
Weak hits:
ENSMMUP00000000164   0.000171   361-402   Fibronectin type I module  
ENSMMUP00000000165   0.000691   261-302   Fibronectin type I module  
  0.001   737-783   VWC domain  
ENSMMUP00000000512   0.0012   51-112   Fibronectin type I module  
ENSMMUP00000004434   0.00115   229-300   Fibronectin type I module  
  0.00868   705-745   VWC domain  
ENSMMUP00000004435   0.000659   228-299   Fibronectin type I module  
  0.00565   704-744   VWC domain  
ENSMMUP00000008295   0.00324   2-36   VWC domain  
ENSMMUP00000009392   0.00502   195-234   Fibronectin type I module  
ENSMMUP00000010524   0.00753   30-84   Fibronectin type I module  
ENSMMUP00000010950   0.0115   212-273   VWC domain  
ENSMMUP00000013834   0.000272   4367-4449   VWC domain  
  0.000429   386-427   VWC domain  
ENSMMUP00000016516   0.000115   132-173   VWC domain  
ENSMMUP00000016518   0.000104   114-155   VWC domain  
ENSMMUP00000016786   0.000146   819-868   Fibronectin type I module  
ENSMMUP00000023809   0.000607   845-912   VWC domain  
ENSMMUP00000024516   0.000126   755-816   Fibronectin type I module  
  0.0167   309-350   Fibronectin type I module  
ENSMMUP00000026182   0.000827   239-304   VWC domain  
ENSMMUP00000029922   0.0023   1171-1219   Fibronectin type I module  
ENSMMUP00000033026   0.000513   92-132   VWC domain  
ENSMMUP00000038873   0.000167   49-84   Fibronectin type I module  
ENSMMUP00000039468   0.00146   41-91   Fibronectin type I module  
ENSMMUP00000039488   0.00262   445-492   VWC domain  
ENSMMUP00000039960   0.000209   536-610   Fibronectin type I module  
  0.0146   479-539   VWC domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   105027 105027
No Yes Homo sapiens 76_38 Human 383 107
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 76_3.1 Western gorilla 125 45
No Yes Pongo abelii 76_2 Sumatran orangutan 89 33
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 91 32
No Yes Papio anubis 76 Olive baboon 98 30
No Yes Macaca mulatta 76_1 Rhesus monkey 238 57
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 257 100
No Yes Otolemur garnettii 76_3 Small-eared galago 79 28
No Yes Microcebus murinus 76_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 76_5.0 Norway rat 125 42
No Yes Mus musculus 76_38 House mouse 258 68
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 87 32
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 73 31
No Yes Cavia porcellus 76_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 106 38
No Yes Ochotona princeps 76 American pika 63 25
No Yes Tupaia belangeri 76 Northern tree shrew 42 23
No Yes Sus scrofa 76_10.2 Pig 144 43
No Yes Bos taurus 76_3.1 Cattle 154 37
No Yes Ovis aries 76_3.1 Sheep 113 39
No Yes Vicugna pacos 76_1 Alpaca 44 21
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 76_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 76_1 Giant panda 110 42
No Yes Canis familiaris 76_3.1 Dog 144 52
No Yes Felis catus 76_6.2 Domestic cat 101 37
No Yes Equus caballus 76_2 Horse 146 47
No Yes Myotis lucifugus 76_2.0 Little brown bat 109 33
No Yes Pteropus vampyrus 76_1 Large flying fox 80 32
No Yes Sorex araneus 76_1 European shrew 36 20
No Yes Erinaceus europaeus 76 Western European hedgehog 39 18
No Yes Procavia capensis 76_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 76_3 African savanna elephant 110 42
No Yes Echinops telfairi 76 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 91 39
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 76_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 95 44
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 82 35
No Yes Ornithorhynchus anatinus 76_5 Platypus 85 41
No Yes Saccoglossus kowalevskii v3.0   266 96
No Yes Petromyzon marinus 76_7.0 Sea lamprey 47 24
No Yes Meleagris gallopavo 76_2 Turkey 65 39
No Yes Gallus gallus 76_4 Chicken 82 30
No Yes Anas platyrhynchos 76_1.0 Mallard 65 31
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 68 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 76 37
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 70 35
No Yes Anolis carolinensis 76_2.0 Green anole 96 36
No Yes Xenopus laevis African clawed frog 225 64
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 162 50
No Yes Latimeria chalumnae 76_1 Coelacanth 114 49
No Yes Lepisosteus oculatus 76 Spotted gar 174 58
No Yes Gadus morhua 76_1 Atlantic cod 84 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 190 59
No Yes Takifugu rubripes 76_4 Torafugu 363 145
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 104 55
No Yes Oryzias latipes 76_1 Japanese medaka 110 48
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 106 39
No Yes Poecilia formosa 76 Amazon molly 113 45
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 161 55
No Yes Astyanax mexicanus 76 Mexican tetra 105 46
No Yes Danio rerio 76_9 Zebrafish 195 80
No Yes Oikopleura dioica   11 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 117 45
No Yes Ciona intestinalis 76 Vase tunicate 60 24
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 124 36
No Yes Adineta vaga   24 5
No Yes Octopus bimaculoides 280   555 83
No Yes Crassostrea gigas 22 Pacific oyster 121 40
No Yes Lottia gigantea Owl limpet 84 33
No Yes Helobdella robusta   7 5
No Yes Capitella sp. I   29 15
No Yes Danaus plexippus OGS1.0 Monarch butterfly 23 9
No Yes Heliconius melpomene Postman butterfly 20 7
No Yes Bombyx mori Domestic silkworm 16 10
No Yes Nasonia vitripennis Jewel wasp 27 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 42 13
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 21 8
No Yes Linepithema humile v1.1 Argentine ant 21 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 19 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 19 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 24 8
No Yes Atta cephalotes v1.1   22 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 24 8
No Yes Lucilia cuprina Australian sheep blowfly 23 9
No Yes Drosophila grimshawi 1.3   26 13
No Yes Drosophila willistoni 1.3   27 13
No Yes Drosophila pseudoobscura 2.13   23 13
No Yes Drosophila persimilis 1.3   25 11
No Yes Drosophila suzukii   23 9
No Yes Drosophila yakuba 1.3   25 13
No Yes Drosophila simulans 1.3   20 11
No Yes Drosophila sechellia 1.3   25 13
No Yes Drosophila melanogaster 76_5 Fruit fly 51 24
No Yes Drosophila erecta 1.3   27 13
No Yes Drosophila ananassae 1.3   27 14
No Yes Drosophila virilis 1.2   26 12
No Yes Drosophila mojavensis 1.3   28 14
No Yes Megaselia scalaris 22   7 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 23 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 29 15
No Yes Anopheles darlingi 22 American malaria mosquito 17 12
No Yes Anopheles gambiae 49_3j African malaria mosquito 24 11
No Yes Tribolium castaneum 3.0 Red flour beetle 29 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 25 11
No Yes Acyrthosiphon pisum Pea aphid 18 6
No Yes Rhodnius prolixus 22   29 10
No Yes Daphnia pulex Common water flea 30 18
No Yes Strigamia maritima 22   34 17
No Yes Sarcoptes scabiei   13 5
No Yes Tetranychus urticae Two-spotted spider mite 31 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 25 9
No Yes Pristionchus pacificus   9 4
No Yes Meloidogyne incognita Southern root-knot nematode 5 3
No Yes Meloidogyne hapla   7 2
No Yes Onchocerca volvulus 22   7 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 7 2
No Yes Caenorhabditis japonica   7 2
No Yes Caenorhabditis brenneri   6 2
No Yes Caenorhabditis remanei   7 3
No Yes Caenorhabditis elegans 76_235 Roundworm 31 8
No Yes Caenorhabditis briggsae 2   6 2
No Yes Trichinella spiralis 22   10 5
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 39 21
No Yes Acropora digitifera v1.0   23 15
No Yes Nematostella vectensis 1.0 Starlet sea anemone 18 12
No Yes Hydra vulgaris   10 6
No Yes Amphimedon queenslandica   7 4
No Yes Trichoplax adhaerens   30 4
No Yes Sorangium cellulosum 'So ce 56'   2 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 153 60
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 28 19
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 25 12
No Yes Ascaris suum Victoria/Ghent Pig roundworm 10 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 24 6
No Yes Sorangium cellulosum So0157-2   4 1
No Yes Homo sapiens 75_37 (old version GRC) Human 363 114
No Yes Homo sapiens (NCBI version) Human 201 59
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 95 33
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 8 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 6 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 1
No Yes Homo sapiens 69_37 Human 84 35
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 69_3.1 Western gorilla 102 38
No Yes Pongo abelii 69_2 Sumatran orangutan 73 30
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 79 31
No Yes Macaca mulatta 69_1 Rhesus monkey 73 26
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 91 36
No Yes Otolemur garnettii 69_3 Small-eared galago 79 28
No Yes Microcebus murinus 69_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 69_3.4 Norway rat 90 34
No Yes Mus musculus 69_38 House mouse 94 33
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 81 30
No Yes Cavia porcellus 69_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 69_2 Rabbit 91 34
No Yes Ochotona princeps 69 American pika 63 25
No Yes Tupaia belangeri 69 Northern tree shrew 42 23
No Yes Sus scrofa 69_10.2 Pig 84 29
No Yes Bos taurus 69_3.1 Cattle 92 32
No Yes Vicugna pacos 69_1 Alpaca 44 21
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 69_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 69_1 Giant panda 94 37
No Yes Canis familiaris 69_3.1 Dog 101 38
No Yes Felis catus 69 Domestic cat 48 24
No Yes Equus caballus 69_2 Horse 93 33
No Yes Myotis lucifugus 69_2.0 Little brown bat 71 28
No Yes Pteropus vampyrus 69_1 Large flying fox 80 32
No Yes Sorex araneus 69_1 European shrew 36 20
No Yes Erinaceus europaeus 69 Western European hedgehog 39 18
No Yes Procavia capensis 69_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 69_3 African savanna elephant 87 31
No Yes Echinops telfairi 69 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 47 26
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 69_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 85 36
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 80 33
No Yes Ornithorhynchus anatinus 69_5 Platypus 75 39
No Yes Petromyzon marinus 69_7.0 Sea lamprey 42 19
No Yes Meleagris gallopavo 69_2 Turkey 58 32
No Yes Gallus gallus 69_2 Chicken 62 30
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 66 32
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 65 32
No Yes Anolis carolinensis 69_2.0 Green anole 92 36
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 102 39
No Yes Latimeria chalumnae 69_1 Coelacanth 101 42
No Yes Gadus morhua 69_1 Atlantic cod 80 35
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 95 34
No Yes Takifugu rubripes 69_4 Torafugu 97 36
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 87 40
No Yes Oryzias latipes 69_1 Japanese medaka 91 35
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 106 39
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 105 41
No Yes Danio rerio 69_9 Zebrafish 120 51
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 52 18
No Yes Ciona intestinalis 69 Vase tunicate 49 21
No Yes Drosophila melanogaster 69_5 Fruit fly 26 12
No Yes Caenorhabditis elegans 69_215 Roundworm 7 2
No Yes NCBI 2017_08 genome   52215 16311
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 2
No Yes STRING v9.0.5 (STRING)   2925 1172
No Yes Uniprot 2018_03 genome   27002 10540
No Yes Global Ocean Sampling Expedition (GOS)   4 3
No Yes PDB chains (SCOP 1.75) (PDB)   13 9
No Yes Protein Data Bank (all PDB sequenc)   83 50
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   179 179
No Yes TargetDB (Targets)   39 21
No Yes UniProt viral sequences (Viral)   19 19

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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