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Retrovirus capsid protein, N-terminal core domain superfamily domain assignments
in
Sus scrofa 69_10.2

Network of domain occurrence in all genomes


Assignment details

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Sus scrofa 69_10.2 has 16 significant domains in 16 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000019160   7.06e-55   203-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000019422   9.42e-55   205-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000020797   1.18e-52   205-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000021008   7.06e-55   203-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000021237   7.06e-55   203-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000022829   1.65e-31   203-319   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000022871   7.06e-55   203-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000023285   5.73e-33   204-319   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000023630   1.02e-30   190-306   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000024113   7.06e-55   203-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000024629   1.18e-53   198-327   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000024778   7.06e-55   203-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000025458   1.1e-39   205-330   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000025775   1.18e-27   203-320   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000026419   7.06e-55   203-332   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000026948   9.42e-38   167-289   Retrovirus capsid protein, N-terminal core domain  
 
Weak hits:
ENSSSCP00000015888   0.0255   9-53   Retrovirus capsid protein, N-terminal core domain  
ENSSSCP00000022696   0.0247   12-56   Retrovirus capsid protein, N-terminal core domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   115773 115773
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 30 30
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Sus scrofa 76_10.2 Pig 16 16
No Yes Ovis aries 76_3.1 Sheep 53 53
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Felis catus 76_6.2 Domestic cat 73 73
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 16 16
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 32 32
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 103 103
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Gallus gallus 76_4 Chicken 4 4
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 16 16
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Trypanosoma congolense 2.4   4 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 11
No Yes Sus scrofa 69_10.2 Pig 16 16
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 30 30
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 103 103
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Mouse Gut Community ob2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1881 1863
No Yes Protozoadb 2010_08 (Protozoadb)   1 1
No Yes STRING v9.0.5 (STRING)   54 54
No Yes Uniprot 2018_03 genome   71776 71770
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   58 58
No Yes PDB chains (SCOP 1.75) (PDB)   19 19
No Yes Protein Data Bank (all PDB sequenc)   3127 3127
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   5884 5884
No Yes UniProt viral sequences (Viral)   32297 32292

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