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  Home > Genomes > Felis catus 76_6.2 > Retrovirus capsid protein, N-terminal core domain domains


Retrovirus capsid protein, N-terminal core domain superfamily domain assignments
in
Felis catus 76_6.2

Network of domain occurrence in all genomes

Assignment details

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Felis catus 76_6.2 has 73 significant domains in 73 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSFCAP00000016450   1.57e-48   203-333   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000016779   9.42e-46   202-323   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000016958   1.18e-42   220-347   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000017184   1.1e-44   201-326   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000017305   0.00000000000000173   200-313   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000017311   3.22e-48   198-324   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000017338   2.28e-40   197-321   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000017463   1.1e-34   230-375   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000017672   0.00000000000000942   147-252   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000017867   3.53e-48   210-336   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000017948   1.49e-40   189-310   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000018189   2.35e-48   222-352   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000018300   1.26e-24   185-245   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000018391   1.57e-50   206-333   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000018437   4.32e-52   218-342   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000018510   0.00000018   216-251   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000019163   7.22e-48   191-309   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000019383   1.02e-40   204-321   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000019472   3.3e-42   219-345   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000019817   1.26e-43   222-351   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000019839   8.63e-43   203-321   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000019892   6.59e-20   195-257   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000019960   2.35e-47   68-194   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000019985   3.3e-36   230-376   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020074   8.63e-45   201-327   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020161   9.42e-51   214-335   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020388   3.37e-43   212-321   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020491   9.42e-49   209-331   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020509   1.26e-46   192-322   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020535   1.41e-47   208-334   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020595   1.96e-48   194-324   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020632   6.59e-52   229-353   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020639   5.26e-41   108-236   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000020720   1.96e-44   199-322   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021072   1.1e-48   215-345   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021118   2.51e-46   200-323   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021153   2.59e-41   192-318   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021393   1.02e-42   194-323   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021500   5.41e-41   196-315   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021585   1.1e-18   155-267   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021690   2.12e-39   187-309   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021842   1.49e-44   205-326   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000021986   2.59e-44   107-231   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022043   0.0000000000000306   2-77   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022054   1.02e-36   194-297   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022191   7.3e-44   202-331   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022287   2.98e-41   189-315   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022355   2.12e-46   198-325   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022480   9.42e-49   107-234   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022679   3.37e-52   216-340   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022745   0.0000000149   157-224   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000022995   0.0000000526   192-232   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000023131   6.91e-38   157-285   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000023742   2.12e-40   185-310   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024028   5.65e-47   223-349   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024096   4e-46   122-248   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024150   7.06e-30   207-308   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024240   1.41e-28   133-259   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024311   2.9e-44   202-330   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024321   0.00000000204   191-253   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024419   3.77e-30   171-274   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024438   2.67e-50   209-335   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024474   6.12e-31   206-281   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024503   1.49e-46   107-226   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024529   1.41e-35   152-278   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024747   7.53e-40   111-231   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024944   1.96e-44   226-350   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000024978   1.1e-48   232-358   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000025213   7.85e-34   165-267   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000025281   8.63e-50   198-325   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000025368   2.9e-47   204-329   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000025519   2.12e-44   206-329   Retrovirus capsid protein, N-terminal core domain  
ENSFCAP00000025545   1.1e-47   210-340   Retrovirus capsid protein, N-terminal core domain  

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View all assignments containing a Retrovirus capsid protein, N-terminal core domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   115773 115773
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 30 30
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Sus scrofa 76_10.2 Pig 16 16
No Yes Ovis aries 76_3.1 Sheep 53 53
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Felis catus 76_6.2 Domestic cat 73 73
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 16 16
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 32 32
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 103 103
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Gallus gallus 76_4 Chicken 4 4
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 16 16
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Trypanosoma congolense 2.4   4 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 11
No Yes Sus scrofa 69_10.2 Pig 16 16
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 30 30
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 103 103
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Mouse Gut Community ob2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1881 1863
No Yes Protozoadb 2010_08 (Protozoadb)   1 1
No Yes STRING v9.0.5 (STRING)   54 54
No Yes Uniprot 2018_03 genome   71776 71770
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   58 58
No Yes PDB chains (SCOP 1.75) (PDB)   19 19
No Yes Protein Data Bank (all PDB sequenc)   3127 3127
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   5884 5884
No Yes UniProt viral sequences (Viral)   32297 32292

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.