SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


SH3-domain superfamily domain assignments
in
Cavia porcellus 76_3

Assignment details

(show help)


Cavia porcellus 76_3 has 288 significant domains in 214 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000000067   0.000000000000112   376-438   SH3-domain  
ENSCPOP00000000164   1.31e-23   218-332   SH3-domain  
  6.96e-19   149-216   SH3-domain  
ENSCPOP00000000228   3.28e-16   276-354   SH3-domain  
ENSCPOP00000000481   1.13e-19   205-274   SH3-domain  
ENSCPOP00000000599   0.000000000000217   489-600   SH3-domain  
  0.0000000205   686-734   SH3-domain  
ENSCPOP00000000630   1.14e-19   732-804   SH3-domain  
  3.28e-19   976-1046   SH3-domain  
  4.73e-19   900-962   SH3-domain  
  7.35e-18   1061-1131   SH3-domain  
ENSCPOP00000000665   1.44e-31   495-609,652-686   SH3-domain  
ENSCPOP00000000958   2.27e-37   81-188,236-271   SH3-domain  
ENSCPOP00000001010   2.1e-21   451-517   SH3-domain  
  7.88e-19   651-731   SH3-domain  
  8.53e-19   512-593   SH3-domain  
ENSCPOP00000001051   0.00000000000000158   518-579   SH3-domain  
ENSCPOP00000001133   0.000000000000328   168-268   SH3-domain  
ENSCPOP00000001155   0.00000000000000129   264-339   SH3-domain  
ENSCPOP00000001177   0.0000000000144   346-361,473-531   SH3-domain  
ENSCPOP00000001232   2.63e-20   397-484   SH3-domain  
ENSCPOP00000001471   6.3e-21   269-344   SH3-domain  
  6.17e-20   4-69   SH3-domain  
  3.41e-17   615-684   SH3-domain  
  0.00000000000000289   66-126   SH3-domain  
ENSCPOP00000001499   1.84e-29   153-300   SH3-domain  
ENSCPOP00000001631   1.19e-20   32-112   SH3-domain  
ENSCPOP00000001677   8.93e-18   170-231   SH3-domain  
ENSCPOP00000001685   0.000000000000499   526-626   SH3-domain  
ENSCPOP00000001690   8.53e-20   867-948   SH3-domain  
ENSCPOP00000001711   0.00000114   1547-1629   SH3-domain  
ENSCPOP00000001804   4.01e-16   742-806   SH3-domain  
ENSCPOP00000001951   0.0000000000000548   203-267   SH3-domain  
ENSCPOP00000002007   1.31e-18   771-834   SH3-domain  
ENSCPOP00000002337   6.69e-23   1036-1099   SH3-domain  
ENSCPOP00000002589   1.58e-21   190-265   SH3-domain  
ENSCPOP00000002620   4.33e-20   1199-1257   SH3-domain  
  3.15e-19   735-809   SH3-domain  
  6.3e-18   808-896   SH3-domain  
ENSCPOP00000002640   8.93e-19   589-669   SH3-domain  
  0.00000000000236   491-565   SH3-domain  
ENSCPOP00000002844   3.74e-21   119-208   SH3-domain  
  0.000000000000459   225-300   SH3-domain  
ENSCPOP00000002962   3.34e-34   40-174   SH3-domain  
ENSCPOP00000002984   1.58e-29   322-462   SH3-domain  
ENSCPOP00000003112   3.15e-17   13-99   SH3-domain  
ENSCPOP00000003292   0.0000000363   2617-2700   SH3-domain  
ENSCPOP00000003334   0.00000000000341   749-816   SH3-domain  
  0.00000000000407   505-571   SH3-domain  
ENSCPOP00000003431   2.36e-17   509-583   SH3-domain  
ENSCPOP00000003499   7.35e-22   7-92   SH3-domain  
ENSCPOP00000003511   5.25e-23   153-215   SH3-domain  
  0.0000000372   4-41   SH3-domain  
ENSCPOP00000003585   2.36e-21   269-329   SH3-domain  
ENSCPOP00000003633   4.33e-22   40-160   SH3-domain  
ENSCPOP00000003698   2.91e-16   252-282,317-374   SH3-domain  
ENSCPOP00000004161   2.21e-28   160-209   SH3-domain  
  7.32e-25   5-52   SH3-domain  
ENSCPOP00000004169   0.00000000000000171   267-348   SH3-domain  
ENSCPOP00000004279   0.00000000481   275-356   SH3-domain  
ENSCPOP00000004302   2.1e-22   188-290   SH3-domain  
  7.48e-22   111-168   SH3-domain  
  3.15e-17   5-61   SH3-domain  
ENSCPOP00000004415   4.13e-25   927-1014   SH3-domain  
  2.49e-18   1102-1162   SH3-domain  
  0.00000000000975   1022-1080   SH3-domain  
ENSCPOP00000004513   2.23e-19   22-126   SH3-domain  
ENSCPOP00000004637   6.3e-17   510-582   SH3-domain  
ENSCPOP00000004642   3.41e-17   6592-6664   SH3-domain  
ENSCPOP00000004688   1.74e-21   53-137   SH3-domain  
ENSCPOP00000004723   9.22e-16   259-335   SH3-domain  
ENSCPOP00000004792   0.0000000000263   1478-1549   SH3-domain  
ENSCPOP00000004949   2.36e-16   1513-1577   SH3-domain  
ENSCPOP00000005010   4.59e-22   495-548   SH3-domain  
ENSCPOP00000005273   1.74e-39   41-150,189-224   SH3-domain  
ENSCPOP00000005274   0.0000000000000668   11-85   SH3-domain  
ENSCPOP00000005325   4.2e-20   81-166   SH3-domain  
ENSCPOP00000005338   4.46e-23   434-493   SH3-domain  
ENSCPOP00000005359   1.71e-17   245-308   SH3-domain  
  2.1e-17   1503-1565   SH3-domain  
  0.00000000000000158   1277-1353   SH3-domain  
  0.00000000000000197   127-205   SH3-domain  
  0.00000000000000709   4-62   SH3-domain  
  0.0000000000735   66-131   SH3-domain  
ENSCPOP00000005433   0.000000000126   139-207   SH3-domain  
ENSCPOP00000005550   0.00000000435   3-65   SH3-domain  
ENSCPOP00000005590   4.46e-18   231-302   SH3-domain  
  0.0000367   308-363   SH3-domain  
ENSCPOP00000005652   1.09e-19   166-226   SH3-domain  
  1.27e-18   268-338   SH3-domain  
  1.71e-16   441-529   SH3-domain  
  6.43e-16   829-904   SH3-domain  
  0.0000000000328   1053-1127   SH3-domain  
ENSCPOP00000005767   1.58e-21   418-471   SH3-domain  
ENSCPOP00000005785   2.36e-21   130-201   SH3-domain  
  2.1e-20   444-521   SH3-domain  
  1.31e-17   804-890   SH3-domain  
  0.0000000000000013   197-260   SH3-domain  
ENSCPOP00000005796   3.54e-24   314-395   SH3-domain  
  1.44e-22   46-110   SH3-domain  
  1.44e-21   146-205   SH3-domain  
ENSCPOP00000005833   0.00000000000000227   560-637   SH3-domain  
ENSCPOP00000005999   2.36e-18   374-430   SH3-domain  
ENSCPOP00000006161   0.0000000000000853   484-558   SH3-domain  
ENSCPOP00000006201   1.84e-23   129-227   SH3-domain  
  0.0000000000144   208-299   SH3-domain  
ENSCPOP00000006209   3.54e-18   11-94   SH3-domain  
ENSCPOP00000006219   0.00000000000223   46-166   SH3-domain  
ENSCPOP00000006273   6.95e-22   1-87   SH3-domain  
ENSCPOP00000006512   5.38e-21   4-65   SH3-domain  
ENSCPOP00000006820   4.86e-24   409-471   SH3-domain  
ENSCPOP00000006949   1.97e-16   562-626   SH3-domain  
ENSCPOP00000006968   0.00000000000000114   25-118   SH3-domain  
ENSCPOP00000006982   4.2e-23   52-172   SH3-domain  
ENSCPOP00000007043   4.73e-17   4-83   SH3-domain  
ENSCPOP00000007052   3.94e-22   1030-1093   SH3-domain  
ENSCPOP00000007060   0.000000000000801   605-661   SH3-domain  
ENSCPOP00000007076   1.59e-17   45-114   SH3-domain  
ENSCPOP00000007086   0.00000000000000249   33-126   SH3-domain  
ENSCPOP00000007096   0.00000000000486   138-210   SH3-domain  
ENSCPOP00000007131   0.00000000000000106   3-73   SH3-domain  
ENSCPOP00000007411   1.58e-16   674-693,767-822   SH3-domain  
ENSCPOP00000007847   0.0000000000000197   764-832   SH3-domain  
ENSCPOP00000007924   2.23e-33   137-269   SH3-domain  
ENSCPOP00000007934   7.61e-17   119-197   SH3-domain  
ENSCPOP00000007978   1.97e-21   649-711   SH3-domain  
  1.12e-19   495-555   SH3-domain  
  2.1e-19   718-776   SH3-domain  
  0.000000000971   400-483   SH3-domain  
  0.0000000249   570-627   SH3-domain  
ENSCPOP00000008008   2.23e-19   457-511   SH3-domain  
  6.04e-19   232-321   SH3-domain  
ENSCPOP00000008010   3.54e-16   645-700   SH3-domain  
ENSCPOP00000008170   0.00000000000969   2539-2603   SH3-domain  
  0.0000000000194   1632-1723   SH3-domain  
ENSCPOP00000008315   4.2e-22   182-254   SH3-domain  
ENSCPOP00000008326   0.0000000000000774   304-369   SH3-domain  
ENSCPOP00000008468   5.91e-20   899-961   SH3-domain  
ENSCPOP00000008708   0.000000002   387-444   SH3-domain  
ENSCPOP00000008740   4.59e-18   515-589   SH3-domain  
ENSCPOP00000008751   1.31e-18   629-708   SH3-domain  
  2.1e-18   1701-1776   SH3-domain  
  2.1e-17   1563-1644   SH3-domain  
ENSCPOP00000008776   0.00000000000321   355-434   SH3-domain  
ENSCPOP00000008846   0.00000000000000122   399-455   SH3-domain  
ENSCPOP00000008861   1.27e-18   485-547   SH3-domain  
ENSCPOP00000008978   8.55e-22   158-239   SH3-domain  
ENSCPOP00000009058   1.71e-18   153-209   SH3-domain  
ENSCPOP00000009228   8.66e-17   835-912   SH3-domain  
ENSCPOP00000009249   1.31e-17   175-255   SH3-domain  
ENSCPOP00000009439   4.2e-24   162-232   SH3-domain  
ENSCPOP00000009505   3.15e-25   148-217   SH3-domain  
ENSCPOP00000009657   3.94e-21   110-168   SH3-domain  
  4.59e-21   271-350   SH3-domain  
  5.38e-19   4-61   SH3-domain  
ENSCPOP00000009717   0.00000000338   9-66   SH3-domain  
ENSCPOP00000009735   5.64e-30   560-674,711-745   SH3-domain  
ENSCPOP00000009747   3.54e-33   601-719   SH3-domain  
ENSCPOP00000009757   1.31e-21   243-308   SH3-domain  
  0.000347   309-364   SH3-domain  
ENSCPOP00000009777   3.81e-31   497-611,658-692   SH3-domain  
ENSCPOP00000009819   0.00000000512   519-591   SH3-domain  
ENSCPOP00000009898   1.6e-25   48-141   SH3-domain  
ENSCPOP00000010184   2.63e-21   592-664   SH3-domain  
  0.0000000000000119   495-562   SH3-domain  
ENSCPOP00000010282   0.000000000102   3-90   SH3-domain  
ENSCPOP00000010308   9.98e-16   1059-1133   SH3-domain  
ENSCPOP00000010402   0.0000000204   508-569   SH3-domain  
ENSCPOP00000010517   2.1e-23   66-175   SH3-domain  
ENSCPOP00000010658   0.0000000000000919   284-358   SH3-domain  
ENSCPOP00000010731   8.55e-16   743-805   SH3-domain  
ENSCPOP00000010798   2.1e-19   381-443   SH3-domain  
ENSCPOP00000010812   0.00000000000000123   5-65   SH3-domain  
ENSCPOP00000010936   0.00000000000000656   461-530   SH3-domain  
ENSCPOP00000010944   4.46e-18   387-465   SH3-domain  
  4.86e-18   124-190   SH3-domain  
  9.19e-16   185-249   SH3-domain  
ENSCPOP00000011162   8.53e-18   6-88   SH3-domain  
ENSCPOP00000011187   0.000000000722   5-66   SH3-domain  
ENSCPOP00000011203   0.000000000000359   2322-2386   SH3-domain  
  0.000000000589   1645-1710   SH3-domain  
ENSCPOP00000011354   0.00000000000374   1398-1464   SH3-domain  
ENSCPOP00000011542   8.4e-28   68-195   SH3-domain  
ENSCPOP00000011777   1.01e-16   461-535   SH3-domain  
ENSCPOP00000011885   2.76e-20   37-122   SH3-domain  
ENSCPOP00000012022   2.36e-18   358-422   SH3-domain  
ENSCPOP00000012091   0.00000000000000922   240-305   SH3-domain  
ENSCPOP00000012093   6.04e-19   718-793   SH3-domain  
  0.000000000000197   1315-1397   SH3-domain  
  0.000000000171   1437-1508   SH3-domain  
ENSCPOP00000012160   3.15e-25   1132-1207   SH3-domain  
  4.86e-19   878-967   SH3-domain  
  7.48e-19   739-814   SH3-domain  
  1.31e-18   995-1054   SH3-domain  
  0.00000000000000184   1069-1136   SH3-domain  
ENSCPOP00000012478   6.69e-18   445-517   SH3-domain  
ENSCPOP00000012807   2.1e-20   38-109   SH3-domain  
ENSCPOP00000012849   8.27e-28   219-335   SH3-domain  
ENSCPOP00000012919   0.000000000263   50-127   SH3-domain  
ENSCPOP00000012943   2.36e-19   372-425   SH3-domain  
ENSCPOP00000012991   5.15e-23   415-475   SH3-domain  
ENSCPOP00000013128   9.35e-17   55-139   SH3-domain  
ENSCPOP00000013145   7.74e-19   3-80   SH3-domain  
ENSCPOP00000013180   0.00000000000801   476-537   SH3-domain  
ENSCPOP00000013242   0.0000000000223   602-672   SH3-domain  
ENSCPOP00000013444   0.000000000102   245-328   SH3-domain  
  0.000000544   191-251   SH3-domain  
ENSCPOP00000013492   8.79e-23   128-252   SH3-domain  
ENSCPOP00000013606   1.55e-22   37-143   SH3-domain  
ENSCPOP00000013659   1.71e-20   7-108   SH3-domain  
ENSCPOP00000013682   6.02e-18   265-297,328-385   SH3-domain  
ENSCPOP00000013849   0.000000000000381   809-857   SH3-domain  
ENSCPOP00000013865   1.84e-23   270-333   SH3-domain  
ENSCPOP00000013901   5.51e-19   2-68   SH3-domain  
ENSCPOP00000013973   0.0000000000000381   9-67   SH3-domain  
ENSCPOP00000014035   1.14e-35   193-323   SH3-domain  
ENSCPOP00000014047   4.46e-27   79-202   SH3-domain  
ENSCPOP00000014070   3.41e-17   740-796   SH3-domain  
ENSCPOP00000014306   0.000000000000114   1-62   SH3-domain  
ENSCPOP00000014330   1.71e-21   115-177   SH3-domain  
  9.98e-21   193-276   SH3-domain  
  5.25e-18   5-60   SH3-domain  
ENSCPOP00000014377   8.93e-33   203-335   SH3-domain  
ENSCPOP00000014445   0.00000000000000158   384-468   SH3-domain  
  0.00000000000000328   486-543   SH3-domain  
ENSCPOP00000014664   8.01e-24   27-130   SH3-domain  
ENSCPOP00000014860   0.000000000276   390-439   SH3-domain  
ENSCPOP00000014949   2.89e-22   195-296   SH3-domain  
  2.76e-17   125-186   SH3-domain  
  0.00000000000000109   336-420   SH3-domain  
  0.000000000000538   817-882   SH3-domain  
ENSCPOP00000015083   0.000000693   118-175   SH3-domain  
ENSCPOP00000015222   4.07e-44   26-169   SH3-domain  
ENSCPOP00000015365   1.97e-19   791-852   SH3-domain  
ENSCPOP00000015371   0.00000016   2-34   SH3-domain  
ENSCPOP00000015839   0.000000000000263   17-72   SH3-domain  
ENSCPOP00000015987   3.02e-21   675-742   SH3-domain  
  8.66e-16   450-529   SH3-domain  
ENSCPOP00000016311   0.0000000000000962   5-82   SH3-domain  
ENSCPOP00000016343   0.0000000000111   619-680   SH3-domain  
ENSCPOP00000016636   5.64e-16   755-817   SH3-domain  
ENSCPOP00000016650   0.00000000000000449   69-143   SH3-domain  
ENSCPOP00000016856   4.99e-19   189-278   SH3-domain  
  0.000000000171   414-450   SH3-domain  
ENSCPOP00000016979   0.000000000276   455-505   SH3-domain  
ENSCPOP00000017173   5.12e-25   2-67,106-141   SH3-domain  
ENSCPOP00000017197   1.97e-17   187-275   SH3-domain  
ENSCPOP00000017572   0.0000111   118-171   SH3-domain  
ENSCPOP00000017712   4.07e-20   286-339   SH3-domain  
ENSCPOP00000017773   0.00000000000000131   716-777   SH3-domain  
ENSCPOP00000017790   0.0000000000000114   146-220   SH3-domain  
ENSCPOP00000017835   2.49e-23   77-143   SH3-domain  
  0.0000000000000289   2-59   SH3-domain  
ENSCPOP00000017861   0.0000000000459   11-99   SH3-domain  
ENSCPOP00000017864   1.29e-17   546-629   SH3-domain  
  0.0000000000000538   454-530   SH3-domain  
ENSCPOP00000018009   0.00000000000000184   153-208   SH3-domain  
ENSCPOP00000018012   2.39e-23   250-353   SH3-domain  
ENSCPOP00000018265   8.79e-20   972-1053   SH3-domain  
ENSCPOP00000018276   0.000000000171   3-62   SH3-domain  
ENSCPOP00000018641   1.44e-18   528-602   SH3-domain  
ENSCPOP00000018711   1.71e-18   1015-1077   SH3-domain  
ENSCPOP00000018726   1.84e-16   18-88   SH3-domain  
ENSCPOP00000018830   0.0000000534   401-434   SH3-domain  
ENSCPOP00000019005   1.44e-17   35-113   SH3-domain  
  0.0334   676-734   SH3-domain  
ENSCPOP00000019218   0.000000919   44-95   SH3-domain  
ENSCPOP00000019232   1.72e-22   202-304   SH3-domain  
ENSCPOP00000019240   0.000000000236   451-506   SH3-domain  
ENSCPOP00000019439   1.26e-16   4-75   SH3-domain  
ENSCPOP00000019516   0.0000000000104   296-345   SH3-domain  
ENSCPOP00000019589   3.28e-21   192-214,270-324   SH3-domain  
  0.00000000000000324   3-54   SH3-domain  
ENSCPOP00000019633   5.12e-19   461-537   SH3-domain  
ENSCPOP00000019714   0.000000000000289   228-289   SH3-domain  
  0.000000013   143-217   SH3-domain  
ENSCPOP00000020056   1.09e-20   16-118   SH3-domain  
ENSCPOP00000020068   4.59e-21   739-822   SH3-domain  
  0.00000000000000171   640-714   SH3-domain  
  0.0013   1-25   SH3-domain  
ENSCPOP00000020118   4.46e-18   5-90   SH3-domain  
ENSCPOP00000020168   0.00000000000000696   185-264   SH3-domain  
ENSCPOP00000020220   0.000000000000932   197-253   SH3-domain  
  0.0000000000158   114-186   SH3-domain  
ENSCPOP00000020371   1.08e-16   1051-1111   SH3-domain  
ENSCPOP00000020582   0.00000015   567-634   SH3-domain  
ENSCPOP00000020709   2.36e-31   470-603   SH3-domain  
ENSCPOP00000020916   0.0000000167   1567-1637   SH3-domain  
ENSCPOP00000021162   3.94e-21   110-168   SH3-domain  
  4.59e-21   271-350   SH3-domain  
  5.38e-19   4-61   SH3-domain  
 
Weak hits:
ENSCPOP00000000165   0.000131   136-174   SH3-domain  
ENSCPOP00000005557   0.000159   344-400   SH3-domain  
ENSCPOP00000006894   0.00561   520-559   SH3-domain  
ENSCPOP00000008585   0.000622   394-443   SH3-domain  
ENSCPOP00000020631   0.0076   335-357   SH3-domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a SH3-domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   467525 467525
No Yes Homo sapiens 76_38 Human 1103 874
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 191
No Yes Gorilla gorilla 76_3.1 Western gorilla 356 277
No Yes Pongo abelii 76_2 Sumatran orangutan 281 211
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 279 212
No Yes Papio anubis 76 Olive baboon 305 223
No Yes Macaca mulatta 76_1 Rhesus monkey 492 376
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 717 550
No Yes Otolemur garnettii 76_3 Small-eared galago 280 211
No Yes Microcebus murinus 76_1 Gray mouse lemur 215 159
No Yes Rattus norvegicus 76_5.0 Norway rat 361 267
No Yes Mus musculus 76_38 House mouse 692 546
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 230 171
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 259 197
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 277 206
No Yes Cavia porcellus 76_3 Domestic guinea pig 288 214
No Yes Oryctolagus cuniculus 76_2 Rabbit 271 201
No Yes Ochotona princeps 76 American pika 216 164
No Yes Tupaia belangeri 76 Northern tree shrew 181 142
No Yes Sus scrofa 76_10.2 Pig 326 250
No Yes Bos taurus 76_3.1 Cattle 295 219
No Yes Ovis aries 76_3.1 Sheep 308 230
No Yes Vicugna pacos 76_1 Alpaca 127 97
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 246 184
No Yes Mustela putorius furo 76_1.0 Domestic ferret 266 199
No Yes Ailuropoda melanoleuca 76_1 Giant panda 315 234
No Yes Canis familiaris 76_3.1 Dog 365 274
No Yes Felis catus 76_6.2 Domestic cat 285 210
No Yes Equus caballus 76_2 Horse 354 255
No Yes Myotis lucifugus 76_2.0 Little brown bat 256 191
No Yes Pteropus vampyrus 76_1 Large flying fox 250 192
No Yes Sorex araneus 76_1 European shrew 149 119
No Yes Erinaceus europaeus 76 Western European hedgehog 178 137
No Yes Procavia capensis 76_1 Cape rock hyrax 208 158
No Yes Loxodonta africana 76_3 African savanna elephant 447 315
No Yes Echinops telfairi 76 Small Madagascar hedgehog 201 155
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 325 247
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 111 82
No Yes Macropus eugenii 76_1.0 Tammar wallaby 210 159
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 299 222
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 277 203
No Yes Ornithorhynchus anatinus 76_5 Platypus 233 185
No Yes Saccoglossus kowalevskii v3.0   363 240
No Yes Petromyzon marinus 76_7.0 Sea lamprey 112 94
No Yes Meleagris gallopavo 76_2 Turkey 267 202
No Yes Gallus gallus 76_4 Chicken 268 202
No Yes Anas platyrhynchos 76_1.0 Mallard 243 179
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 225 168
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 259 189
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 284 214
No Yes Anolis carolinensis 76_2.0 Green anole 259 197
No Yes Xenopus laevis African clawed frog 417 321
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 357 261
No Yes Latimeria chalumnae 76_1 Coelacanth 305 232
No Yes Lepisosteus oculatus 76 Spotted gar 383 288
No Yes Gadus morhua 76_1 Atlantic cod 326 250
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 467 358
No Yes Takifugu rubripes 76_4 Torafugu 1232 958
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 436 334
No Yes Oryzias latipes 76_1 Japanese medaka 401 316
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 360 279
No Yes Poecilia formosa 76 Amazon molly 377 286
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 500 386
No Yes Astyanax mexicanus 76 Mexican tetra 369 283
No Yes Danio rerio 76_9 Zebrafish 693 540
No Yes Oikopleura dioica   89 69
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 225 190
No Yes Ciona intestinalis 76 Vase tunicate 119 93
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 148 110
No Yes Adineta vaga   211 169
No Yes Octopus bimaculoides 280   163 116
No Yes Crassostrea gigas 22 Pacific oyster 117 85
No Yes Lottia gigantea Owl limpet 107 81
No Yes Helobdella robusta   132 114
No Yes Capitella sp. I   135 101
No Yes Danaus plexippus OGS1.0 Monarch butterfly 83 65
No Yes Heliconius melpomene Postman butterfly 71 57
No Yes Bombyx mori Domestic silkworm 71 59
No Yes Nasonia vitripennis Jewel wasp 78 63
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 175 146
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 91 66
No Yes Linepithema humile v1.1 Argentine ant 93 68
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 96 69
No Yes Solenopsis invicta v.2.2.3 Red fire ant 79 58
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 94 69
No Yes Atta cephalotes v1.1   93 69
No Yes Camponotus floridanus v3.3 Florida carpenter ant 96 70
No Yes Lucilia cuprina Australian sheep blowfly 75 58
No Yes Drosophila grimshawi 1.3   95 74
No Yes Drosophila willistoni 1.3   87 68
No Yes Drosophila pseudoobscura 2.13   85 65
No Yes Drosophila persimilis 1.3   95 76
No Yes Drosophila suzukii   85 67
No Yes Drosophila yakuba 1.3   84 67
No Yes Drosophila simulans 1.3   75 58
No Yes Drosophila sechellia 1.3   86 69
No Yes Drosophila melanogaster 76_5 Fruit fly 421 315
No Yes Drosophila erecta 1.3   88 68
No Yes Drosophila ananassae 1.3   85 66
No Yes Drosophila virilis 1.2   86 67
No Yes Drosophila mojavensis 1.3   86 66
No Yes Megaselia scalaris 22   41 35
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 98 77
No Yes Culex pipiens quinquefasciatus Southern house mosquito 85 66
No Yes Anopheles darlingi 22 American malaria mosquito 60 48
No Yes Anopheles gambiae 49_3j African malaria mosquito 94 71
No Yes Tribolium castaneum 3.0 Red flour beetle 91 75
No Yes Pediculus humanus corporis (Early assembly) Human body louse 89 71
No Yes Acyrthosiphon pisum Pea aphid 89 68
No Yes Rhodnius prolixus 22   81 63
No Yes Daphnia pulex Common water flea 92 70
No Yes Strigamia maritima 22   106 82
No Yes Sarcoptes scabiei   59 46
No Yes Tetranychus urticae Two-spotted spider mite 79 59
No Yes Ixodes scapularis (Preliminary) Black-legged tick 85 63
No Yes Pristionchus pacificus   61 52
No Yes Meloidogyne incognita Southern root-knot nematode 71 62
No Yes Meloidogyne hapla   33 32
No Yes Onchocerca volvulus 22   69 54
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 89 68
No Yes Caenorhabditis japonica   78 63
No Yes Caenorhabditis brenneri   118 90
No Yes Caenorhabditis remanei   101 77
No Yes Caenorhabditis elegans 76_235 Roundworm 206 153
No Yes Caenorhabditis briggsae 2   84 63
No Yes Trichinella spiralis 22   75 52
No Yes Hymenolepis microstoma   72 58
No Yes Echinococcus multilocularis   73 64
No Yes Echinococcus granulosus   72 63
No Yes Taenia solium Pork tapeworm 68 61
No Yes Schistosoma mansoni   66 54
No Yes Mnemiopsis leidyi Sea walnut 81 61
No Yes Thelohanellus kitauei   18 13
No Yes Acropora digitifera v1.0   143 99
No Yes Nematostella vectensis 1.0 Starlet sea anemone 118 90
No Yes Hydra vulgaris   107 76
No Yes Amphimedon queenslandica   260 215
No Yes Trichoplax adhaerens   64 53
No Yes Proterospongia sp. ATCC 50818   140 102
No Yes Monosiga brevicollis   108 76
No Yes Sphaeroforma arctica JP610   36 26
No Yes Capsaspora owczarzaki ATCC 30864   111 86
No Yes Conidiobolus coronatus NRRL28638 v1.0   36 30
No Yes Mortierella verticillata NRRL 6337   60 46
No Yes Phycomyces blakesleeanus   64 52
No Yes Rhizopus oryzae RA 99-880   69 58
No Yes Mucor circinelloides   73 59
No Yes Rhizomucor miehei CAU432   59 49
No Yes Malassezia globosa CBS 7966   37 31
No Yes Sporisorium reilianum 22   31 24
No Yes Ustilago maydis   30 23
No Yes Mixia osmundae IAM 14324 v1.0   31 24
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   31 25
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   41 30
No Yes Melampsora laricis-populina   35 27
No Yes Rhodotorula graminis WP1 v1.0   29 22
No Yes Sporobolomyces roseus IAM 13481   21 17
No Yes Microbotryum violaceum 22   34 27
No Yes Wallemia sebi v1.0   28 22
No Yes Sphaerobolus stellatus v1.0   40 35
No Yes Piloderma croceum F 1598 v1.0   42 35
No Yes Serpula lacrymans var. lacrymans S7.9   20 17
No Yes Coniophora puteana   33 28
No Yes Hydnomerulius pinastri v2.0   44 35
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   36 28
No Yes Pisolithus microcarpus 441 v1.0   56 41
No Yes Pisolithus tinctorius Marx 270 v1.0   42 33
No Yes Scleroderma citrinum Foug A v1.0   37 28
No Yes Coprinopsis cinerea okayama7 130 v3   41 34
No Yes Pleurotus ostreatus Oyster mushroom 38 30
No Yes Amanita thiersii Skay4041 v1.0   34 28
No Yes Amanita muscaria Koide v1.0 Fly agaric 37 29
No Yes Galerina marginata v1.0   39 32
No Yes Hebeloma cylindrosporum h7 v2.0   40 33
No Yes Laccaria bicolor S238N-H82   48 38
No Yes Agaricus bisporus var. bisporus   38 32
No Yes Schizophyllum commune   34 27
No Yes Stereum hirsutum FP-91666 SS1 v1.0   38 31
No Yes Heterobasidion annosum   30 23
No Yes Gloeophyllum trabeumv1.0   37 30
No Yes Punctularia strigosozonata v1.0   42 34
No Yes Sebacina vermifera MAFF 305830 v1.0   53 37
No Yes Fomitiporia mediterranea v1.0   41 33
No Yes Tulasnella calospora AL13/4D v1.0   54 43
No Yes Postia placenta   53 42
No Yes Wolfiporia cocos MD-104 SS10 v1.0   32 27
No Yes Fomitopsis pinicolav1.0   34 27
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   34 27
No Yes Phanerochaete chrysosporium RP-78 2.1   28 21
No Yes Dichomitus squalens   30 25
No Yes Trametes versicolor v1.0   34 27
No Yes Tremella mesenterica Witches' butter 29 23
No Yes Daldinia eschscholzii EC12 v1.0   32 27
No Yes Apiospora montagnei NRRL 25634 v1.0   29 25
No Yes Magnaporthe poae ATCC 64411 22   23 19
No Yes Magnaporthe grisea 70-15   30 25
No Yes Podospora anserina   31 25
No Yes Sporotrichum thermophile ATCC 42464   30 25
No Yes Thielavia terrestris NRRL 8126   31 26
No Yes Chaetomium globosum CBS 148.51   29 25
No Yes Neurospora tetrasperma   30 25
No Yes Neurospora discreta FGSC 8579   28 23
No Yes Neurospora crassa OR74A   29 24
No Yes Cryphonectria parasitica Chestnut blight fungus 31 26
No Yes Verticillium albo-atrum VaMs.102   27 23
No Yes Verticillium dahliae VdLs.17   28 23
No Yes Acremonium alcalophilumv 1.0   29 25
No Yes Glomerella graminicola 22   30 25
No Yes Fusarium graminearum   29 24
No Yes Nectria haematococca mpVI   28 23
No Yes Fusarium oxysporum f. sp. lycopersici 4286   24 21
No Yes Fusarium verticillioides 7600   28 23
No Yes Trichoderma asperellum CBS 433.97 v1.0   29 24
No Yes Trichoderma atroviride   29 24
No Yes Trichoderma citrinoviride v1.0   28 24
No Yes Trichoderma reesei 1.2   29 24
No Yes Trichoderma virens Gv29-8   29 24
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   28 23
No Yes Trichoderma harzianum CBS 226.95 v1.0   29 24
No Yes Amorphotheca resinae v1.0 Creosote fungus 28 24
No Yes Botrytis cinerea B05.10   29 23
No Yes Sclerotinia sclerotiorum   28 23
No Yes Blumeria graminis 22   29 24
No Yes Didymella exigua CBS 183.55 v1.0   29 24
No Yes Leptosphaeria maculans 22   30 26
No Yes Setosphaeria turcica v1.0   29 25
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   29 24
No Yes Cochliobolus victoriae FI3 v1.0   29 24
No Yes Cochliobolus carbonum 26-R-13 v1.0   29 24
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 29 24
No Yes Alternaria brassicicola   25 21
No Yes Cochliobolus lunatus m118 v2.0   29 24
No Yes Pyrenophora teres f. teres 22   30 25
No Yes Pyrenophora tritici-repentis   30 25
No Yes Stagonospora nodorum   30 25
No Yes Mycosphaerella graminicola IPO323   29 24
No Yes Zasmidium cellare ATCC 36951 v1.0   30 25
No Yes Dothistroma septosporum   32 26
No Yes Septoria musiva v1.0   29 24
No Yes Mycosphaerella fijiensis CIRAD86   25 20
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   27 23
No Yes Paracoccidioides brasiliensis Pb18   28 23
No Yes Coccidioides posadasii RMSCC 3488   28 23
No Yes Coccidioides immitis RS   29 24
No Yes Ajellomyces dermatitidis SLH14081   29 24
No Yes Histoplasma capsulatum class NAmI strain WU24   25 20
No Yes Microsporum canis CBS 113480   29 24
No Yes Trichophyton equinum CBS 127.97   27 23
No Yes Trichophyton verrucosum HKI 0517   28 24
No Yes Arthroderma benhamiae CBS 112371   29 24
No Yes Trichophyton tonsurans CBS 112818   29 24
No Yes Trichophyton rubrum CBS 118892   29 24
No Yes Uncinocarpus reesii 1704   28 23
No Yes Aspergillus zonatus v1.0   29 24
No Yes Penicillium chrysogenum Wisconsin 54-1255   29 24
No Yes Penicillium chrysogenum v1.0   29 24
No Yes Aspergillus acidus v1.0   30 25
No Yes Aspergillus fumigatus Af293   30 25
No Yes Aspergillus brasiliensis v1.0   30 25
No Yes Aspergillus nidulans FGSC A4   30 25
No Yes Aspergillus sydowii v1.0   30 25
No Yes Aspergillus versicolor v1.0   30 25
No Yes Aspergillus glaucus   29 24
No Yes Aspergillus carbonarius ITEM 5010   30 25
No Yes Neosartorya fischeri NRRL 181   29 24
No Yes Aspergillus terreus NIH2624   27 23
No Yes Aspergillus tubingensis v1.0   30 25
No Yes Aspergillus wentii v1.0   31 26
No Yes Aspergillus oryzae RIB40   27 22
No Yes Aspergillus niger 22   30 25
No Yes Aspergillus niger ATCC 1015   19 18
No Yes Aspergillus flavus NRRL3357   29 24
No Yes Aspergillus clavatus NRRL 1   30 25
No Yes Penicillium marneffei ATCC 18224   32 27
No Yes Tuber melanosporum Mel28 22   27 22
No Yes Tuber melanosporum Vittad Perigord truffle 27 22
No Yes Hansenula polymorpha v2.0   23 18
No Yes Dekkera bruxellensis CBS 2499 v2.0   23 20
No Yes Pichia membranifaciensv1.0   25 20
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   28 23
No Yes Candida dubliniensis CD36   29 24
No Yes Candida tropicalis MYA-3404   28 23
No Yes Candida parapsilosis   26 24
No Yes Candida albicans SC5314   29 24
No Yes Lodderomyces elongisporus NRRL YB-4239   25 24
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   25 20
No Yes Pichia stipitis CBS 6054   27 22
No Yes Candida guilliermondii ATCC 6260   29 24
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   28 23
No Yes Debaromyces hansenii   28 23
No Yes Wickerhamomyces anomalus   25 21
No Yes Pichia pastoris GS115   26 21
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   19 17
No Yes Yarrowia lipolytica CLIB122   26 21
No Yes Candida lusitaniae ATCC 42720   25 22
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   29 24
No Yes Vanderwaltozyma polyspora DSM 70294   29 25
No Yes Candida glabrata CBS138   29 25
No Yes Kluyveromyces thermotolerans CBS 6340   25 21
No Yes Lachancea kluyveri   25 21
No Yes Kluyveromyces waltii   25 21
No Yes Ashbya gossypii ATCC 10895   26 22
No Yes Zygosaccharomyces rouxii   26 22
No Yes Saccharomyces mikatae MIT   27 23
No Yes Saccharomyces paradoxus MIT   28 24
No Yes Saccharomyces cerevisiae 76 Baker's yeast 27 23
No Yes Saccharomyces bayanus MIT   26 22
No Yes Kluyveromyces lactis   25 21
No Yes Schizosaccharomyces cryophilus OY26 22   26 21
No Yes Schizosaccharomyces octosporus yFS286   26 21
No Yes Schizosaccharomyces japonicus yFS275   25 20
No Yes Schizosaccharomyces pombe Fission yeast 26 21
No Yes Catenaria anguillulae PL171 v1.0   64 53
No Yes Allomyces macrogynus ATCC 38327   140 120
No Yes Spizellomyces punctatus DAOM BR117   87 77
No Yes Dictyostelium discoideum   36 31
No Yes Dictyostelium purpureum   30 27
No Yes Entamoeba dispar 1.2   47 32
No Yes Entamoeba invadens 1.2   46 29
No Yes Entamoeba histolytica 1   44 30
No Yes Selaginella moellendorffii   6 6
No Yes Pinus taeda Loblolly pine 2 2
No Yes Picea abies Norway spruce 4 4
No Yes Eucalyptus grandis v201 Rose gum 7 7
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   9 9
No Yes Citrus clementina v165   18 18
No Yes Citrus sinensis v154 Sweet orange 5 5
No Yes Thellungiella halophila v173   5 5
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 7 7
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 5 5
No Yes Arabidopsis thaliana 10 Thale cress 8 8
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 14 14
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 14 14
No Yes Cucumis sativus v122 Cucumber 4 4
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 3 3
No Yes Prunus persica v139 Peach 4 4
No Yes Linum usitatissimum v200 Flax 13 13
No Yes Manihot esculenta v147 Cassava 7 7
No Yes Populus trichocarpa v156 Black cottonwood 7 7
No Yes Vitis vinifera Wine grape 6 6
No Yes Mimulus guttatus v140 Spotted monkey flower 7 7
No Yes Solanum lycopersicum v.2.3 Tomato 5 5
No Yes Solanum tuberosum Potato 6 6
No Yes Actinidia chinensis Hongyang   8 8
No Yes Aquilegia coerulea v195   13 13
No Yes Triticum urartu 22   3 3
No Yes Triticum aestivum 22 Bread wheat 14 14
No Yes Aegilops tauschii 22   4 4
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 6 5
No Yes Oryza meridionalis 22   5 5
No Yes Oryza glumaepatula 22   6 6
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   6 6
No Yes Oryza nivara 22   5 5
No Yes Oryza brachyantha 22 Malo sina 5 5
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 5 5
No Yes Oryza sativa v193 Rice 5 5
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 7 7
No Yes Panicum virgatum v202 Switchgrass 12 12
No Yes Setaria italica v164 Foxtail millet 5 5
No Yes Zea mays subsp. mays Maize 15 15
No Yes Zea mays v181 Maize 16 16
No Yes Sorghum bicolor Sorghum 5 5
No Yes Musa balbisiana Balbis banana 7 7
No Yes Musa acuminata 22 Wild Malaysian banana 9 9
No Yes Amborella trichopoda 22   5 5
No Yes Physcomitrella patens   8 8
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 1
No Yes Chlorella variabilis sp. NC64A   2 1
No Yes Chlorella vulgaris   2 1
No Yes Volvox carteri f. nagariensis   2 1
No Yes Volvox carteri v199   2 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   125 96
No Yes Bigelowiella natans CCMP2755 22   38 34
No Yes Cyanophora paradoxa   1 1
No Yes Leishmania mexicana 2.4   7 5
No Yes Leishmania major strain Friedlin   7 5
No Yes Leishmania infantum JPCM5 2.4   7 5
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   7 5
No Yes Trypanosoma vivax   3 3
No Yes Trypanosoma cruzi strain CL Brener   8 6
No Yes Trypanosoma congolense 2.4   4 4
No Yes Trypanosoma brucei gambiense v4.1   4 4
No Yes Trypanosoma brucei TREU927 v4.1   4 4
No Yes Ectocarpus siliculosus   11 9
No Yes Aureococcus anophagefferens   17 16
No Yes Albugo laibachii 22   3 2
No Yes Pythium iwayamai DAOM BR242034 22   6 4
No Yes Pythium arrhenomanes ATCC 12531 22   6 4
No Yes Pythium ultimum v1.7-2   6 4
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   5 4
No Yes Pythium vexans DAOM BR484 22   6 5
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phytophthora sojae 1.1   4 3
No Yes Phytophthora infestans T30-4   5 4
No Yes Phytophthora capsici   3 3
No Yes Hyaloperonospora arabidopsidis 22   2 1
No Yes Fragilariopsis cylindrus   2 2
No Yes Thalassiosira pseudonana CCMP1335   2 2
No Yes Perkinsus marinus ATCC 50983   21 17
No Yes Paramecium tetraurelia   5 5
No Yes Tetrahymena thermophila SB210 1   5 5
No Yes Neospora caninum   1 1
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   1 1
No Yes Toxoplasma gondii GT1   1 1
No Yes Babesia bovis T2Bo   2 2
No Yes Theileria parva   1 1
No Yes Theileria annulata   1 1
No Yes Symbiodinium minutum clade B1 v1.2   43 35
No Yes Naegleria gruberi   16 13
No Yes Trichomonas vaginalis   28 24
No Yes Guillardia theta CCMP2712 v1.0   19 19
No Yes Emiliania huxleyi CCMP1516   13 11
No Yes Kytococcus sedentarius DSM 20547   1 1
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Anaerococcus prevotii DSM 20548   1 1
No Yes Acidaminococcus intestini RyC-MR95   1 1
No Yes Acidaminococcus fermentans DSM 20731   1 1
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Clostridium cellulolyticum H10   2 2
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Ruminococcus sp.   1 1
No Yes Thermincola potens JR   1 1
No Yes Pelotomaculum thermopropionicum SI   1 1
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   2 2
No Yes Desulfotomaculum kuznetsovii DSM 6115   1 1
No Yes Clostridium difficile 630   5 4
No Yes Clostridium sticklandii DSM 519   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Roseburia hominis A2-183   1 1
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Syntrophothermus lipocalidus DSM 12680   1 1
No Yes Alkaliphilus oremlandii OhILAs   1 1
No Yes Clostridium sp. BNL1100   2 2
No Yes Clostridium perfringens ATCC 13124   7 6
No Yes Mahella australiensis 50-1 BON   1 1
No Yes Thermoanaerobacter tengcongensis MB4   3 2
No Yes Moorella thermoacetica ATCC 39073   1 1
No Yes Ammonifex degensii KC4   1 1
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   2 1
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   2 1
No Yes Thermoanaerobacter sp. X514   2 1
No Yes Thermoanaerobacter italicus Ab9   2 1
No Yes Thermoanaerobacter wiegelii Rt8.B1   1 1
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   2 1
No Yes Oenococcus oeni PSU-1   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293   1 1
No Yes Streptococcus infantarius subsp. infantarius CJ18   1 1
No Yes Exiguobacterium sp. AT1b   2 2
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus mucilaginosus 3016   3 3
No Yes Listeria welshimeri serovar 6b str. SLCC5334   2 1
No Yes Listeria innocua Clip11262   2 1
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   2 1
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   2 1
No Yes Listeria ivanovii subsp. ivanovii PAM 55   2 1
No Yes Geobacillus thermoglucosidasius C56-YS93   2 2
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Anoxybacillus flavithermus WK1   1 1
No Yes Geobacillus thermoleovorans CCB_US3_UF5   4 2
No Yes Geobacillus kaustophilus HTA426   2 1
No Yes Geobacillus sp. GHH01   1 1
No Yes Bacillus sp. JS   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   2 2
No Yes Bacillus cereus 03BB102   2 2
No Yes Bacillus anthracis str. A0248   2 2
No Yes Bacillus clausii KSM-K16   11 2
No Yes Bacillus megaterium DSM 319   5 2
No Yes Bacillus coagulans 2-6   2 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Prevotella intermedia 17   1 1
No Yes Porphyromonas gingivalis ATCC 33277   1 1
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   2 1
No Yes Sphingobacterium sp. 21   2 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   1 1
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Turneriella parva DSM 21527   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Deferribacter desulfuricans SSM1   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Leptotrichia buccalis C-1013-b   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Desulfobacca acetoxidans DSM 11109   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Achromobacter xylosoxidans A8   2 1
No Yes Methylovorus sp. MP688   1 1
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Magnetococcus marinus MC-1   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Rhodospirillum rubrum F11   2 1
No Yes Starkeya novella DSM 506   1 1
No Yes Sinorhizobium medicae WSM419   3 2
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Pelagibacterium halotolerans B2   2 2
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bartonella tribocorum CIP 105476   1 1
No Yes Haemophilus parasuis SH0165   1 1
No Yes Vibrio anguillarum 775   2 1
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Marinomonas mediterranea MMB-1   2 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Stenotrophomonas maltophilia K279a   4 2
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   2 1
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   2 1
No Yes Enterobacter sp. R4-368   2 1
No Yes Pseudomonas entomophila L48   2 1
No Yes Haloferax mediterranei ATCC 33500   2 1
No Yes Methanococcus vannielii SB   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 460 350
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 271 208
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 113 89
No Yes Ascaris suum Victoria/Ghent Pig roundworm 81 64
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 144 114
No Yes Cryptococcus neoformans var. grubii H99   28 22
No Yes Cryptococcus neoformans B-3501A   31 24
No Yes Cryptococcus neoformans JEC21   28 21
No Yes Paracoccidioides brasiliensis Pb01   26 21
No Yes Paracoccidioides brasiliensis Pb03   28 23
No Yes Coccidioides posadasii str. Silveira   26 21
No Yes Coccidioides immitis RMSCC 3703   29 24
No Yes Coccidioides immitis RMSCC 2394   27 22
No Yes Coccidioides immitis H538.4   25 20
No Yes Ajellomyces dermatitidis ER-3   29 24
No Yes Histoplasma capsulatum H143   26 21
No Yes Histoplasma capsulatum H88   28 23
No Yes Histoplasma capsulatum G186AR   29 24
No Yes Aspergillus fumigatus A1163   30 25
No Yes Candida albicans WO-1   26 21
No Yes Saccharomyces cerevisiae UC5   24 22
No Yes Saccharomyces cerevisiae PW5   18 18
No Yes Saccharomyces cerevisiae FL100   20 16
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CLIB324   10 7
No Yes Saccharomyces cerevisiae CBS7960   20 16
No Yes Saccharomyces cerevisiae YJM269   23 19
No Yes Saccharomyces cerevisiae T7   27 23
No Yes Saccharomyces cerevisiae FostersB   13 12
No Yes Saccharomyces cerevisiae FostersO   14 13
No Yes Saccharomyces cerevisiae VL3   18 17
No Yes Saccharomyces cerevisiae Vin13   19 16
No Yes Saccharomyces cerevisiae LalvinQA23   19 17
No Yes Saccharomyces cerevisiae AWRI796   17 15
No Yes Saccharomyces cerevisiae Sigma1278b   27 23
No Yes Saccharomyces cerevisiae W303   26 22
No Yes Saccharomyces cerevisiae JAY291   26 22
No Yes Saccharomyces cerevisiae AWRI1631   14 13
No Yes Saccharomyces cerevisiae YPS163   5 5
No Yes Saccharomyces cerevisiae M22   6 5
No Yes Saccharomyces cerevisiae T73   10 9
No Yes Saccharomyces cerevisiae CLIB215   13 11
No Yes Saccharomyces cerevisiae Y10   9 8
No Yes Saccharomyces cerevisiae YJM789   28 24
No Yes Saccharomyces cerevisiae YJM789   27 23
No Yes Saccharomyces cerevisiae RM11-1a   27 23
No Yes Saccharomyces cerevisiae RM11-1a   28 24
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 28 24
No Yes Schizosaccharomyces pombe 972h-   26 21
No Yes Batrachochytrium dendrobatidis JEL423   60 50
No Yes Batrachochytrium dendrobatidis JAM81   56 47
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 6 6
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 6 6
No Yes Trypanosoma brucei Lister 427 v4.1   4 4
No Yes Neospora caninum Nc-Liverpool 6.2   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Desulfosporosinus meridiei DSM 13257   2 2
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Clostridium difficile BI1   5 4
No Yes Clostridium difficile R20291   5 4
No Yes Clostridium difficile CD196   5 4
No Yes Clostridium sp. SY8519   1 1
No Yes Clostridium saccharobutylicum DSM 13864   1 1
No Yes Clostridium perfringens SM101   3 3
No Yes Clostridium perfringens str. 13   6 4
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermacetogenium phaeum DSM 12270   1 1
No Yes Thermoanaerobacter sp. X513   2 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides J18   1 1
No Yes Thermobacillus composti KWC4   3 3
No Yes Paenibacillus mucilaginosus KNP414   3 3
No Yes Paenibacillus mucilaginosus K02   3 3
No Yes Listeria monocytogenes EGD sequence   2 1
No Yes Listeria monocytogenes N53-1   2 1
No Yes Listeria monocytogenes La111   2 1
No Yes Listeria monocytogenes serotype 4b str. LL195   2 1
No Yes Listeria monocytogenes 07PF0776   2 1
No Yes Listeria monocytogenes M7   2 1
No Yes Listeria monocytogenes J1-220   2 1
No Yes Listeria monocytogenes J1816   2 1
No Yes Listeria monocytogenes SLCC2376   2 1
No Yes Listeria monocytogenes SLCC5850   2 1
No Yes Listeria monocytogenes ATCC 19117   2 1
No Yes Listeria monocytogenes L312   2 1
No Yes Listeria monocytogenes SLCC2479   2 1
No Yes Listeria monocytogenes SLCC7179   2 1
No Yes Listeria monocytogenes SLCC2540   2 1
No Yes Listeria monocytogenes SLCC2378   2 1
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   2 1
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   2 1
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   2 1
No Yes Listeria monocytogenes 08-5578   2 1
No Yes Listeria monocytogenes 08-5923   2 1
No Yes Listeria monocytogenes L99   2 1
No Yes Listeria monocytogenes HCC23   2 1
No Yes Listeria monocytogenes 10403S   2 1
No Yes Listeria monocytogenes J0161   2 1
No Yes Listeria monocytogenes Finland 1998   2 1
No Yes Listeria monocytogenes FSL R2-561   2 1
No Yes Listeria monocytogenes serotype 4b str. F2365   2 1
No Yes Listeria monocytogenes EGD-e   2 1
No Yes Geobacillus sp. C56-T3   1 1
No Yes Geobacillus sp. Y4.1MC1   2 2
No Yes Geobacillus sp. Y412MC52   1 1
No Yes Geobacillus sp. Y412MC61   1 1
No Yes Amphibacillus xylanus NBRC 15112   1 1
No Yes Bacillus subtilis PY79   1 1
No Yes Bacillus subtilis XF-1   1 1
No Yes Bacillus subtilis QB928   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   1 1
No Yes Bacillus subtilis subsp. subtilis str. BSP1   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   2 2
No Yes Bacillus toyonensis BCT-7112   4 2
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis MC28   4 3
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   3 2
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   2 1
No Yes Bacillus thuringiensis BMB171   2 2
No Yes Bacillus thuringiensis serovar finitimus YBT-020   3 2
No Yes Bacillus cereus FRI-35   3 2
No Yes Bacillus cereus biovar anthracis str. CI   3 2
No Yes Bacillus cereus AH820   4 3
No Yes Bacillus cereus AH187   3 2
No Yes Bacillus cereus B4264   4 3
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   3 2
No Yes Bacillus cereus F837/76   2 2
No Yes Bacillus cereus NC7401   3 2
No Yes Bacillus cereus E33L   3 2
No Yes Bacillus cereus ATCC 14579   2 1
No Yes Bacillus cereus ATCC 10987   4 3
No Yes Bacillus anthracis str. H9401   2 2
No Yes Bacillus anthracis str. CDC 684   2 2
No Yes Bacillus anthracis str. 'Ames Ancestor'   2 2
No Yes Bacillus anthracis str. Sterne   2 2
No Yes Bacillus anthracis str. Ames   2 2
No Yes Bacillus megaterium WSH-002   3 2
No Yes Bacillus megaterium QM B1551   5 2
No Yes Porphyromonas gingivalis TDC60   1 1
No Yes Porphyromonas gingivalis W83   1 1
No Yes Riemerella anatipestifer RA-CH-2   1 1
No Yes Riemerella anatipestifer RA-CH-1   1 1
No Yes Riemerella anatipestifer RA-GD   1 1
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Rhodospirillum rubrum ATCC 11170   2 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Haemophilus parasuis ZJ0906   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   2 1
No Yes Stenotrophomonas maltophilia D457   3 2
No Yes Stenotrophomonas maltophilia JV3   3 2
No Yes Stenotrophomonas maltophilia R551-3   4 2
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   2 1
No Yes Xanthomonas campestris pv. campestris str. 8004   2 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   2 1
No Yes Pantoea ananatis PA13   2 1
No Yes Pseudomonas putida GB-1   2 1
No Yes Pseudomonas mendocina NK-01   2 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1277 1005
No Yes Homo sapiens (NCBI version) Human 565 427
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 281 209
No Yes Heliconius numata (Incomplete)   8 8
No Yes Loa loa v3.3 (Request) Eye worm 74 59
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 66 56
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 62 49
No Yes Moniliophthora perniciosa FA553 (Genome survey)   23 18
No Yes Lotus japonicus (Early assembly)   5 5
No Yes Malus x domestica (Duplicate) Apple 3 3
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   9 9
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 5 5
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 5 5
No Yes Phoenix dactylifera (Early draft) Date palm 6 6
No Yes Homo sapiens 69_37 Human 319 238
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 242 189
No Yes Gorilla gorilla 69_3.1 Western gorilla 263 199
No Yes Pongo abelii 69_2 Sumatran orangutan 264 198
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 258 196
No Yes Macaca mulatta 69_1 Rhesus monkey 264 199
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 288 217
No Yes Otolemur garnettii 69_3 Small-eared galago 273 204
No Yes Microcebus murinus 69_1 Gray mouse lemur 215 159
No Yes Rattus norvegicus 69_3.4 Norway rat 265 205
No Yes Mus musculus 69_38 House mouse 287 215
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 229 170
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 246 184
No Yes Cavia porcellus 69_3 Domestic guinea pig 278 206
No Yes Oryctolagus cuniculus 69_2 Rabbit 251 187
No Yes Ochotona princeps 69 American pika 216 164
No Yes Tupaia belangeri 69 Northern tree shrew 181 142
No Yes Sus scrofa 69_10.2 Pig 264 205
No Yes Bos taurus 69_3.1 Cattle 266 199
No Yes Vicugna pacos 69_1 Alpaca 126 96
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 245 183
No Yes Mustela putorius furo 69_1.0 Domestic ferret 265 198
No Yes Ailuropoda melanoleuca 69_1 Giant panda 269 201
No Yes Canis familiaris 69_3.1 Dog 280 207
No Yes Felis catus 69 Domestic cat 194 149
No Yes Equus caballus 69_2 Horse 267 197
No Yes Myotis lucifugus 69_2.0 Little brown bat 249 184
No Yes Pteropus vampyrus 69_1 Large flying fox 249 191
No Yes Sorex araneus 69_1 European shrew 149 119
No Yes Erinaceus europaeus 69 Western European hedgehog 178 137
No Yes Procavia capensis 69_1 Cape rock hyrax 208 158
No Yes Loxodonta africana 69_3 African savanna elephant 277 205
No Yes Echinops telfairi 69 Small Madagascar hedgehog 201 155
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 166 126
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 110 81
No Yes Macropus eugenii 69_1.0 Tammar wallaby 209 158
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 241 178
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 258 192
No Yes Ornithorhynchus anatinus 69_5 Platypus 211 164
No Yes Petromyzon marinus 69_7.0 Sea lamprey 103 85
No Yes Meleagris gallopavo 69_2 Turkey 219 164
No Yes Gallus gallus 69_2 Chicken 237 174
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 221 164
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 239 179
No Yes Anolis carolinensis 69_2.0 Green anole 244 181
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 265 195
No Yes Latimeria chalumnae 69_1 Coelacanth 254 190
No Yes Gadus morhua 69_1 Atlantic cod 318 242
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 354 275
No Yes Takifugu rubripes 69_4 Torafugu 331 254
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 354 268
No Yes Oryzias latipes 69_1 Japanese medaka 314 247
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 357 277
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 373 284
No Yes Danio rerio 69_9 Zebrafish 396 305
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 92 75
No Yes Ciona intestinalis 69 Vase tunicate 106 83
No Yes Drosophila melanogaster 69_5 Fruit fly 88 69
No Yes Caenorhabditis elegans 69_215 Roundworm 81 61
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 27 23
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   5 5
No Yes Combined (meta-genome)   8 7
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   7 7
No Yes Dump top (Dump top) (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   17 17
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   6 5
No Yes Human Gut Community Subject 7 (meta-genome)   3 3
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   4 4
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   3 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   240775 175974
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes Protozoadb 2010_08 (Protozoadb)   285 207
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   5 4
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 3
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   11 11
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   8 7
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 6
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10721 8234
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   4 4
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   125642 97806
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   3 3
No Yes Global Ocean Sampling Expedition (GOS)   114 101
No Yes NCBI plasmid sequences (Plasmids)   9 7
No Yes NCBI viral sequences (Viral)   5 5
No Yes PDB chains (SCOP 1.75) (PDB)   127 122
No Yes Protein Data Bank (all PDB sequenc)   922 907
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2103 2103
No Yes TargetDB (Targets)   513 422
No Yes UniProt viral sequences (Viral)   30 30

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]