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  Home > Genomes > Pteropus vampyrus 76_1 > RING/U-box domains


RING/U-box superfamily domain assignments
in
Pteropus vampyrus 76_1

Assignment details

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Pteropus vampyrus 76_1 has 299 significant domains in 265 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPVAP00000000018   0.00003   36-87   RING finger domain, C3HC4  
ENSPVAP00000000088   0.00000000123   515-564   RING finger domain, C3HC4  
ENSPVAP00000000118   1.7e-22   7-83   RING finger domain, C3HC4  
ENSPVAP00000000224   0.0000000000000852   5-68   RING finger domain, C3HC4  
ENSPVAP00000000278   0.0000000471   52-97   RING finger domain, C3HC4  
ENSPVAP00000000376   1.8e-24   707-783   Variant RING domain  
ENSPVAP00000000423   0.000000000624   1776-1827   ZZ domain  
  0.00000000671   1818-1868   ZZ domain  
ENSPVAP00000000568   5.96e-18   940-988   RING finger domain, C3HC4  
ENSPVAP00000000680   0.0000000000000353   28-91   RING finger domain, C3HC4  
ENSPVAP00000000739   0.0000131   107-155   RING finger domain, C3HC4  
ENSPVAP00000000868   0.000000000000457   12-62   RING finger domain, C3HC4  
ENSPVAP00000000887   0.000000942   662-713   RING finger domain, C3HC4  
ENSPVAP00000000895   0.0000000000994   905-965   RING finger domain, C3HC4  
ENSPVAP00000001048   2.1e-20   241-328   RING finger domain, C3HC4  
ENSPVAP00000001050   0.00000128   552-584   RING finger domain, C3HC4  
ENSPVAP00000001278   1.53e-23   498-571   Variant RING domain  
ENSPVAP00000001300   0.000000927   4386-4460   RING finger domain, C3HC4  
ENSPVAP00000001307   0.00000127   517-568   RING finger domain, C3HC4  
ENSPVAP00000001439   0.00000000158   7-58   RING finger domain, C3HC4  
ENSPVAP00000001471   0.00000000000000102   583-660   ZZ domain  
ENSPVAP00000001577   0.000000000000624   34-96   RING finger domain, C3HC4  
ENSPVAP00000001596   4.36e-18   36-147   Zf-UBP  
ENSPVAP00000001646   6.28e-18   34-92   RING finger domain, C3HC4  
ENSPVAP00000001747   0.0001   844-880   RING finger domain, C3HC4  
ENSPVAP00000001827   0.00000173   22-102   Zf-UBP  
ENSPVAP00000001952   0.0000000353   654-700   RING finger domain, C3HC4  
ENSPVAP00000001987   0.000000000000331   284-355   RING finger domain, C3HC4  
ENSPVAP00000002085   1.81e-17   61-122   RING finger domain, C3HC4  
ENSPVAP00000002111   0.000000000000516   224-273   RING finger domain, C3HC4  
ENSPVAP00000002145   0.000000000000374   14-68   RING finger domain, C3HC4  
ENSPVAP00000002162   1.03e-47   21-117   RING finger domain, C3HC4  
ENSPVAP00000002196   0.00000000000177   271-309   RING finger domain, C3HC4  
ENSPVAP00000002280   0.00000000000000214   16-91   RING finger domain, C3HC4  
ENSPVAP00000002412   0.00000000000000186   29-95   RING finger domain, C3HC4  
ENSPVAP00000002440   0.00000000000115   39-112   RING finger domain, C3HC4  
ENSPVAP00000002750   0.00000000000589   36-81   RING finger domain, C3HC4  
ENSPVAP00000002763   0.00000000000137   10-64   RING finger domain, C3HC4  
ENSPVAP00000002796   1.77e-20   262-318   RING finger domain, C3HC4  
ENSPVAP00000002809   0.000000000000435   726-782   RING finger domain, C3HC4  
ENSPVAP00000002928   1.08e-18   7-81   RING finger domain, C3HC4  
ENSPVAP00000003079   0.0000000482   499-549   RING finger domain, C3HC4  
ENSPVAP00000003169   0.0000000224   335-394   U-box  
ENSPVAP00000003221   1.48e-17   393-493   RING finger domain, C3HC4  
ENSPVAP00000003242   3.27e-23   1219-1297   U-box  
ENSPVAP00000003350   0.0000000000000247   22-127   Zf-UBP  
ENSPVAP00000003382   0.00000000899   1759-1810   RING finger domain, C3HC4  
ENSPVAP00000003532   7.83e-16   2-88   RING finger domain, C3HC4  
  0.000459   108-161   ZZ domain  
ENSPVAP00000003561   0.00000000000000155   2-87   RING finger domain, C3HC4  
  0.0023   105-160   ZZ domain  
ENSPVAP00000003573   1.48e-17   30-86   RING finger domain, C3HC4  
ENSPVAP00000003575   8.64e-16   11-72   RING finger domain, C3HC4  
ENSPVAP00000003578   2.42e-20   213-278   RING finger domain, C3HC4  
ENSPVAP00000003582   5.65e-21   3042-3130   ZZ domain  
ENSPVAP00000003709   1.15e-18   7-77   RING finger domain, C3HC4  
ENSPVAP00000003896   0.00000000000000265   21-75   RING finger domain, C3HC4  
ENSPVAP00000003928   0.00000412   55-100   RING finger domain, C3HC4  
ENSPVAP00000003947   0.00000000000000936   134-184   RING finger domain, C3HC4  
ENSPVAP00000003963   0.0000000299   518-567   RING finger domain, C3HC4  
ENSPVAP00000003984   0.000000000895   241-287   RING finger domain, C3HC4  
ENSPVAP00000004060   3.3e-21   188-280   Zf-UBP  
ENSPVAP00000004084   0.00000000217   3-62   RING finger domain, C3HC4  
ENSPVAP00000004448   4.78e-20   83-138   RING finger domain, C3HC4  
ENSPVAP00000004459   0.00000000000324   7-64   RING finger domain, C3HC4  
ENSPVAP00000004475   1.72e-18   64-136   RING finger domain, C3HC4  
ENSPVAP00000004517   0.00000103   931-986   RING finger domain, C3HC4  
ENSPVAP00000004576   7.65e-18   211-289   ZZ domain  
  0.0000000000000168   332-393   RING finger domain, C3HC4  
  0.0000000141   137-205   RING finger domain, C3HC4  
ENSPVAP00000004649   2.3e-18   4-75   RING finger domain, C3HC4  
ENSPVAP00000004677   4.09e-18   132-202   RING finger domain, C3HC4  
ENSPVAP00000004762   0.0000000000000326   431-480   RING finger domain, C3HC4  
ENSPVAP00000004874   8.64e-17   24-80   RING finger domain, C3HC4  
ENSPVAP00000004879   2.65e-17   31-103   RING finger domain, C3HC4  
ENSPVAP00000004895   1.67e-23   4-75   RING finger domain, C3HC4  
ENSPVAP00000005097   1.2e-18   9-86   RING finger domain, C3HC4  
ENSPVAP00000005116   4.32e-22   6-81   RING finger domain, C3HC4  
ENSPVAP00000005120   0.0000000000000188   206-263   ZZ domain  
ENSPVAP00000005176   0.000000000000212   112-170   RING finger domain, C3HC4  
  0.00000000618   46-110   IBR domain  
ENSPVAP00000005182   1.04e-42   349-426   RING finger domain, C3HC4  
ENSPVAP00000005268   0.000000000000706   43-94   Variant RING domain  
ENSPVAP00000005305   4.99e-42   356-434   RING finger domain, C3HC4  
ENSPVAP00000005310   0.0000000167   371-428   RING finger domain, C3HC4  
ENSPVAP00000005471   0.000000115   28-63,126-161   Variant RING domain  
ENSPVAP00000005495   2.87e-20   14-85   RING finger domain, C3HC4  
ENSPVAP00000005505   0.000000000155   229-298   RING finger domain, C3HC4  
ENSPVAP00000005585   0.0000000000346   154-241   U-box  
ENSPVAP00000005623   0.00000000000106   443-495   RING finger domain, C3HC4  
ENSPVAP00000005628   8.01e-18   33-107   RING finger domain, C3HC4  
ENSPVAP00000005848   0.000000000424   2-51   RING finger domain, C3HC4  
ENSPVAP00000005867   0.000000606   444-492   RING finger domain, C3HC4  
ENSPVAP00000005899   6.45e-28   984-1068   U-box  
ENSPVAP00000005924   1.52e-17   7-80   RING finger domain, C3HC4  
ENSPVAP00000006002   0.000000000000379   15-109   RING finger domain, C3HC4  
ENSPVAP00000006129   1.18e-24   261-336   Variant RING domain  
ENSPVAP00000006213   0.0000000000053   1703-1749   ZZ domain  
ENSPVAP00000006250   0.0000883   1321-1376   RING finger domain, C3HC4  
  0.0212   1745-1789   RING finger domain, C3HC4  
ENSPVAP00000006251   7.15e-17   16-100   RING finger domain, C3HC4  
  0.0000000000000483   174-220   RING finger domain, C3HC4  
  0.00000000494   92-158   IBR domain  
ENSPVAP00000006306   0.00000000909   60-109   RING finger domain, C3HC4  
ENSPVAP00000006487   0.00000000000167   102-152   RING finger domain, C3HC4  
ENSPVAP00000006530   8.73e-19   535-597   RING finger domain, C3HC4  
ENSPVAP00000006574   2.7e-16   392-449   RING finger domain, C3HC4  
ENSPVAP00000006878   0.0000000381   16-43   RING finger domain, C3HC4  
ENSPVAP00000006931   0.00000000000000486   381-439   RING finger domain, C3HC4  
ENSPVAP00000006955   0.000000324   143-218   RING finger domain, C3HC4  
ENSPVAP00000007153   8.64e-21   3-86   RING finger domain, C3HC4  
ENSPVAP00000007173   0.000000000383   8-58   RING finger domain, C3HC4  
ENSPVAP00000007174   1.29e-27   2-95   Zf-UBP  
ENSPVAP00000007213   1.17e-22   1023-1119   Zf-UBP  
ENSPVAP00000007240   0.0000000000000165   8-73   Variant RING domain  
ENSPVAP00000007263   0.000000000121   33-83   RING finger domain, C3HC4  
ENSPVAP00000007285   0.0000000000000618   779-847   IBR domain  
  0.0000000159   696-761   RING finger domain, C3HC4  
  0.00000768   859-931   RING finger domain, C3HC4  
ENSPVAP00000007296   0.000000000000795   14-69   RING finger domain, C3HC4  
ENSPVAP00000007305   1.46e-22   18-91   RING finger domain, C3HC4  
ENSPVAP00000007472   2.65e-20   271-335   RING finger domain, C3HC4  
ENSPVAP00000007575   4.62e-34   28-110   RING finger domain, C3HC4  
ENSPVAP00000007640   0.00000000409   1433-1486   RING finger domain, C3HC4  
ENSPVAP00000007817   0.00000000589   28-79   RING finger domain, C3HC4  
ENSPVAP00000007868   0.0000000000000377   73-142   RING finger domain, C3HC4  
ENSPVAP00000007922   0.0000000000116   142-200   RING finger domain, C3HC4  
ENSPVAP00000007926   0.00000000000283   98-152   RING finger domain, C3HC4  
  0.00000000000812   3-71   IBR domain  
ENSPVAP00000007929   0.000000000000192   5-57   RING finger domain, C3HC4  
ENSPVAP00000007938   4.2e-23   211-278   RING finger domain, C3HC4  
ENSPVAP00000007992   6.83e-17   3-65   RING finger domain, C3HC4  
ENSPVAP00000007993   1.37e-20   4-72   RING finger domain, C3HC4  
ENSPVAP00000007994   0.000000000156   197-265   RING finger domain, C3HC4  
ENSPVAP00000008019   0.00000000000177   246-296   RING finger domain, C3HC4  
ENSPVAP00000008186   3.53e-18   619-671   RING finger domain, C3HC4  
ENSPVAP00000008216   2.42e-18   287-343   RING finger domain, C3HC4  
  0.0000000000000132   134-220   RING finger domain, C3HC4  
  0.000000000671   206-275   IBR domain  
ENSPVAP00000008248   0.00000000000000551   2212-2265   RING finger domain, C3HC4  
  0.0000000000883   2053-2138   RING finger domain, C3HC4  
  0.00388   2125-2193   IBR domain  
ENSPVAP00000008276   0.000000000000172   6-56   RING finger domain, C3HC4  
ENSPVAP00000008331   1.48e-37   2-102   RING finger domain, C3HC4  
ENSPVAP00000008379   0.0000000242   324-379   RING finger domain, C3HC4  
ENSPVAP00000008521   5.65e-28   4-99   Zf-UBP  
ENSPVAP00000008604   4.12e-18   3-63   ZZ domain  
ENSPVAP00000008629   4.42e-18   528-595   RING finger domain, C3HC4  
ENSPVAP00000008630   0.000000000283   26-74   RING finger domain, C3HC4  
ENSPVAP00000008685   0.00000000000000401   94-148   RING finger domain, C3HC4  
ENSPVAP00000008691   0.00000000000124   189-228   RING finger domain, C3HC4  
  0.00000006   103-168   IBR domain  
  0.0335   27-54   RING finger domain, C3HC4  
ENSPVAP00000008761   0.00000000000000298   240-295   Variant RING domain  
ENSPVAP00000009030   0.0000000000000596   16-67   RING finger domain, C3HC4  
ENSPVAP00000009092   0.00000000000000129   60-114   Variant RING domain  
ENSPVAP00000009165   0.0000001   433-496   RING finger domain, C3HC4  
ENSPVAP00000009211   0.00000000163   21-67   RING finger domain, C3HC4  
  0.00742   95-140   RING finger domain, C3HC4  
ENSPVAP00000009242   3.3e-21   192-245   RING finger domain, C3HC4  
ENSPVAP00000009273   0.000000000000104   39-87   RING finger domain, C3HC4  
ENSPVAP00000009417   0.0000162   583-637   RING finger domain, C3HC4  
ENSPVAP00000009425   2.99e-16   127-207   RING finger domain, C3HC4  
  0.00000000000151   198-267   IBR domain  
  0.00000027   294-324   RING finger domain, C3HC4  
ENSPVAP00000009581   0.0000000000252   143-191   RING finger domain, C3HC4  
ENSPVAP00000009624   1.46e-22   346-433   RING finger domain, C3HC4  
  7.69e-22   20-87   RING finger domain, C3HC4  
ENSPVAP00000009671   0.000000127   321-367   RING finger domain, C3HC4  
ENSPVAP00000009740   0.00000000555   335-381   RING finger domain, C3HC4  
ENSPVAP00000009750   1.65e-19   98-144   RING finger domain, C3HC4  
ENSPVAP00000009820   0.0000000000000436   542-605   Variant RING domain  
ENSPVAP00000009851   0.000000671   11-59   ZZ domain  
ENSPVAP00000009854   0.0000000000000042   18-92   RING finger domain, C3HC4  
ENSPVAP00000009987   0.0000000000000919   6-52   RING finger domain, C3HC4  
  0.0000487   182-214   IBR domain  
ENSPVAP00000010032   0.00000000000106   724-786   RING finger domain, C3HC4  
ENSPVAP00000010205   4.01e-20   457-539   RING finger domain, C3HC4  
  0.00000000812   639-680   RING finger domain, C3HC4  
  0.00000287   531-613   RING finger domain, C3HC4  
ENSPVAP00000010207   0.0000000631   21-75   RING finger domain, C3HC4  
ENSPVAP00000010261   0.00000000000000862   8-62   RING finger domain, C3HC4  
ENSPVAP00000010262   3.77e-19   7-84   RING finger domain, C3HC4  
ENSPVAP00000010264   0.000000191   8-59   RING finger domain, C3HC4  
ENSPVAP00000010332   0.000000000803   27-78   U-box  
  0.0000132   221-274   U-box  
ENSPVAP00000010360   0.00000000000707   451-512   RING finger domain, C3HC4  
  0.0000000269   134-168   RING finger domain, C3HC4  
ENSPVAP00000010373   3.14e-21   6-80   RING finger domain, C3HC4  
ENSPVAP00000010406   0.000000000053   931-992   RING finger domain, C3HC4  
ENSPVAP00000010420   2.42e-19   12-51,156-188   RING finger domain, C3HC4  
ENSPVAP00000010486   1.08e-16   12-84   RING finger domain, C3HC4  
ENSPVAP00000010511   0.000000000682   56-112   RING finger domain, C3HC4  
ENSPVAP00000010542   0.000000000000221   269-337   RING finger domain, C3HC4  
ENSPVAP00000010589   0.000000000000236   10-70   RING finger domain, C3HC4  
ENSPVAP00000010605   0.00000000000442   353-418   IBR domain  
  0.00000000000996   433-486   RING finger domain, C3HC4  
  0.00000000102   281-324   RING finger domain, C3HC4  
ENSPVAP00000010647   9.42e-19   7-79   RING finger domain, C3HC4  
ENSPVAP00000010691   2.94e-21   63-137   ZZ domain  
  0.0000000442   943-1003   RING finger domain, C3HC4  
  0.00194   814-858   RING finger domain, C3HC4  
ENSPVAP00000010806   0.0000212   148-226   RING finger domain, C3HC4  
ENSPVAP00000010859   3.53e-20   249-306   RING finger domain, C3HC4  
ENSPVAP00000010881   0.00000000000174   277-327   RING finger domain, C3HC4  
ENSPVAP00000010882   0.0000544   75-123   RING finger domain, C3HC4  
ENSPVAP00000010891   0.000000000000353   17-111   RING finger domain, C3HC4  
ENSPVAP00000011030   1.53e-23   8-91   Zf-UBP  
ENSPVAP00000011065   0.0000000000000053   67-120   Variant RING domain  
ENSPVAP00000011069   0.00000303   55-82   RING finger domain, C3HC4  
ENSPVAP00000011216   0.00000000408   2-38   RING finger domain, C3HC4  
ENSPVAP00000011228   5.71e-22   52-105   RING finger domain, C3HC4  
ENSPVAP00000011235   1.9e-20   10-84   RING finger domain, C3HC4  
ENSPVAP00000011295   0.00000000000318   403-447   RING finger domain, C3HC4  
  0.003   319-368   IBR domain  
ENSPVAP00000011365   0.0000000388   8-55   ZZ domain  
ENSPVAP00000011371   0.000000000000707   10-79   RING finger domain, C3HC4  
ENSPVAP00000011395   0.0000000133   25-64   RING finger domain, C3HC4  
  0.0459   149-199   ZZ domain  
ENSPVAP00000011406   3.31e-19   8-79   RING finger domain, C3HC4  
ENSPVAP00000011420   2.65e-20   286-340   RING finger domain, C3HC4  
ENSPVAP00000011426   1.2e-16   155-216   RING finger domain, C3HC4  
ENSPVAP00000011434   0.0000000000173   2-41   Variant RING domain  
ENSPVAP00000011519   0.0000000000000199   16-88   RING finger domain, C3HC4  
ENSPVAP00000011554   7.3e-19   217-291   ZZ domain  
ENSPVAP00000011564   1.21e-19   602-669   RING finger domain, C3HC4  
ENSPVAP00000011582   3.06e-21   3238-3326   ZZ domain  
ENSPVAP00000011592   4.24e-37   175-283   Zf-UBP  
ENSPVAP00000011645   4.62e-20   219-285   RING finger domain, C3HC4  
ENSPVAP00000011768   0.00000000652   43-99   RING finger domain, C3HC4  
ENSPVAP00000011793   0.0000971   355-409   RING finger domain, C3HC4  
ENSPVAP00000011866   0.0000000000000464   799-851   RING finger domain, C3HC4  
ENSPVAP00000011993   1.04e-16   497-564   RING finger domain, C3HC4  
ENSPVAP00000012046   0.0000000000033   1656-1702   ZZ domain  
ENSPVAP00000012221   0.0000318   771-840   RING finger domain, C3HC4  
ENSPVAP00000012299   6.57e-26   389-472   U-box  
ENSPVAP00000012305   1.56e-16   148-194   RING finger domain, C3HC4  
ENSPVAP00000012342   2.21e-23   225-301   U-box  
ENSPVAP00000012435   1.77e-26   273-374   Zf-UBP  
  0.0000000000631   256-301   RING finger domain, C3HC4  
ENSPVAP00000012664   0.000000795   312-357   RING finger domain, C3HC4  
ENSPVAP00000012734   8.33e-19   154-213   RING finger domain, C3HC4  
ENSPVAP00000012746   1.85e-20   268-329   RING finger domain, C3HC4  
ENSPVAP00000012769   0.0000000000000015   2-60   Variant RING domain  
ENSPVAP00000012773   0.000000000148   807-860   RING finger domain, C3HC4  
ENSPVAP00000012862   0.000000000000415   27-93   U-box  
ENSPVAP00000012916   0.0000000000207   234-273   RING finger domain, C3HC4  
ENSPVAP00000013064   0.000000555   301-347   RING finger domain, C3HC4  
ENSPVAP00000013127   2.83e-21   4-76   RING finger domain, C3HC4  
ENSPVAP00000013166   0.0000000000000152   39-107   RING finger domain, C3HC4  
ENSPVAP00000013180   0.0000000297   73-136   RING finger domain, C3HC4  
ENSPVAP00000013202   1.2e-20   215-301   RING finger domain, C3HC4  
  0.000000000000138   290-356   RING finger domain, C3HC4  
  0.0000000000335   396-440   RING finger domain, C3HC4  
ENSPVAP00000013273   0.000000000011   2014-2057   RING finger domain, C3HC4  
ENSPVAP00000013329   0.000000000645   278-309   RING finger domain, C3HC4  
ENSPVAP00000013389   3.67e-18   248-341   U-box  
  0.000000204   478-534   RING finger domain, C3HC4  
ENSPVAP00000013498   0.0000000000109   128-188   RING finger domain, C3HC4  
ENSPVAP00000013547   9.42e-20   219-300   ZZ domain  
ENSPVAP00000013591   0.00000000188   650-711   IBR domain  
  0.00000000553   720-774   RING finger domain, C3HC4  
  0.0000165   567-646   RING finger domain, C3HC4  
ENSPVAP00000013655   9.72e-24   209-275   RING finger domain, C3HC4  
ENSPVAP00000013725   0.000000000000053   159-214   Variant RING domain  
ENSPVAP00000013744   0.00000233   324-389   RING finger domain, C3HC4  
ENSPVAP00000013828   0.0000000000000132   3-55   U-box  
ENSPVAP00000013907   0.0000000000000137   118-175   RING finger domain, C3HC4  
  0.0000000000163   280-356   RING finger domain, C3HC4  
ENSPVAP00000014222   0.0000000215   1130-1184   RING finger domain, C3HC4  
ENSPVAP00000014258   0.00000000208   299-370   RING finger domain, C3HC4  
ENSPVAP00000014265   0.00000000299   597-645   RING finger domain, C3HC4  
ENSPVAP00000014293   0.000000000000906   18-111   RING finger domain, C3HC4  
ENSPVAP00000014431   0.0000000000167   2-62   RING finger domain, C3HC4  
ENSPVAP00000014460   0.00000000259   502-555   RING finger domain, C3HC4  
ENSPVAP00000014473   4.86e-21   75-126   RING finger domain, C3HC4  
ENSPVAP00000014478   4.94e-22   104-198   Zf-UBP  
ENSPVAP00000014480   0.0000000000000908   664-726   Variant RING domain  
ENSPVAP00000014509   0.000000395   26-59,94-102   RING finger domain, C3HC4  
ENSPVAP00000014525   3.74e-17   459-528   RING finger domain, C3HC4  
  0.0000000000291   153-202   RING finger domain, C3HC4  
ENSPVAP00000014566   2.65e-18   3-90   RING finger domain, C3HC4  
ENSPVAP00000014615   3.18e-17   115-175   ZZ domain  
ENSPVAP00000014626   2.5e-20   223-276   RING finger domain, C3HC4  
ENSPVAP00000014893   0.0000000000000119   195-266   RING finger domain, C3HC4  
ENSPVAP00000014983   1.98e-21   332-390   RING finger domain, C3HC4  
  9.84e-17   178-261   RING finger domain, C3HC4  
  0.00000000222   253-320   IBR domain  
ENSPVAP00000015040   2.1e-21   335-380   RING finger domain, C3HC4  
ENSPVAP00000015263   1.52e-18   3-85   RING finger domain, C3HC4  
ENSPVAP00000015275   0.000000000000132   10-67   RING finger domain, C3HC4  
ENSPVAP00000015338   0.00000000000000138   10-71   RING finger domain, C3HC4  
ENSPVAP00000015765   1.1e-20   4-87   RING finger domain, C3HC4  
ENSPVAP00000015902   4.24e-20   1-115   Zf-UBP  
ENSPVAP00000016031   0.000000000328   1917-1964   RING finger domain, C3HC4  
ENSPVAP00000016058   3.53e-20   354-420   RING finger domain, C3HC4  
ENSPVAP00000016185   0.000000000133   134-208   RING finger domain, C3HC4  
ENSPVAP00000016259   3.06e-22   8-79   RING finger domain, C3HC4  
ENSPVAP00000016260   7.83e-21   9-89   RING finger domain, C3HC4  
ENSPVAP00000016363   4.59e-18   393-491   RING finger domain, C3HC4  
ENSPVAP00000016379   6.65e-16   27-96   RING finger domain, C3HC4  
ENSPVAP00000016548   0.00000000000235   23-84   Zf-UBP  
ENSPVAP00000016565   0.000000000000095   14-64   RING finger domain, C3HC4  
ENSPVAP00000016568   0.00000000000979   190-240   RING finger domain, C3HC4  
ENSPVAP00000016592   0.000000000401   8-58   RING finger domain, C3HC4  
ENSPVAP00000016670   1.49e-19   552-599   RING finger domain, C3HC4  
ENSPVAP00000016783   0.000000000127   13-71   RING finger domain, C3HC4  
ENSPVAP00000016882   0.000000000000966   7-71   RING finger domain, C3HC4  
 
Weak hits:
ENSPVAP00000000152   0.0459   272-297   RING finger domain, C3HC4  
ENSPVAP00000000565   0.0146   298-340   RING finger domain, C3HC4  
ENSPVAP00000000725   0.0208   1157-1214   RING finger domain, C3HC4  
ENSPVAP00000001044   0.0141   562-621   RING finger domain, C3HC4  
ENSPVAP00000001131   0.00283   295-342   RING finger domain, C3HC4  
ENSPVAP00000001617   0.00283   737-807   RING finger domain, C3HC4  
ENSPVAP00000002387   0.0282   383-433   RING finger domain, C3HC4  
ENSPVAP00000002948   0.015   118-140   RING finger domain, C3HC4  
ENSPVAP00000003384   0.0106   22-80   Zf-UBP  
ENSPVAP00000004985   0.000216   2-45   RING finger domain, C3HC4  
ENSPVAP00000005353   0.00256   437-483   RING finger domain, C3HC4  
ENSPVAP00000006386   0.000177   11-66   RING finger domain, C3HC4  
ENSPVAP00000006743   0.0418   349-391   RING finger domain, C3HC4  
ENSPVAP00000006925   0.000848   349-388   RING finger domain, C3HC4  
ENSPVAP00000007464   0.00132   34-110   RING finger domain, C3HC4  
ENSPVAP00000007866   0.000424   15-44   RING finger domain, C3HC4  
ENSPVAP00000007885   0.00215   959-989   ZZ domain  
ENSPVAP00000008266   0.00707   1248-1272   RING finger domain, C3HC4  
ENSPVAP00000010108   0.00555   24-55   RING finger domain, C3HC4  
ENSPVAP00000010213   0.0253   61-105   RING finger domain, C3HC4  
ENSPVAP00000012721   0.000384   1218-1270   RING finger domain, C3HC4  
ENSPVAP00000012917   0.00765   52-92   RING finger domain, C3HC4  
ENSPVAP00000013648   0.0795   325-379   RING finger domain, C3HC4  
ENSPVAP00000015139   0.0671   67-102   RING finger domain, C3HC4  
ENSPVAP00000015157   0.00212   274-314   RING finger domain, C3HC4  
ENSPVAP00000015235   0.00777   354-385   RING finger domain, C3HC4  
ENSPVAP00000015777   0.00212   22-70   RING finger domain, C3HC4  
ENSPVAP00000016505   0.00278   315-379   RING finger domain, C3HC4  
ENSPVAP00000016802   0.00579   595-634   RING finger domain, C3HC4  
ENSPVAP00000016803   0.0121   630-674   RING finger domain, C3HC4  
ENSPVAP00000016931   0.000459   1784-1850   ZZ domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   868558 868558
No Yes Homo sapiens 76_38 Human 1389 1295
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 357 321
No Yes Gorilla gorilla 76_3.1 Western gorilla 461 422
No Yes Pongo abelii 76_2 Sumatran orangutan 360 325
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 371 326
No Yes Papio anubis 76 Olive baboon 380 343
No Yes Macaca mulatta 76_1 Rhesus monkey 609 555
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 709 647
No Yes Otolemur garnettii 76_3 Small-eared galago 366 330
No Yes Microcebus murinus 76_1 Gray mouse lemur 229 213
No Yes Rattus norvegicus 76_5.0 Norway rat 361 329
No Yes Mus musculus 76_38 House mouse 820 752
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 232 214
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 332 305
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 326 285
No Yes Cavia porcellus 76_3 Domestic guinea pig 324 292
No Yes Oryctolagus cuniculus 76_2 Rabbit 355 319
No Yes Ochotona princeps 76 American pika 258 237
No Yes Tupaia belangeri 76 Northern tree shrew 206 189
No Yes Sus scrofa 76_10.2 Pig 412 369
No Yes Bos taurus 76_3.1 Cattle 362 326
No Yes Ovis aries 76_3.1 Sheep 362 326
No Yes Vicugna pacos 76_1 Alpaca 185 165
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 297 266
No Yes Mustela putorius furo 76_1.0 Domestic ferret 323 290
No Yes Ailuropoda melanoleuca 76_1 Giant panda 361 322
No Yes Canis familiaris 76_3.1 Dog 415 372
No Yes Felis catus 76_6.2 Domestic cat 327 296
No Yes Equus caballus 76_2 Horse 343 307
No Yes Myotis lucifugus 76_2.0 Little brown bat 353 319
No Yes Pteropus vampyrus 76_1 Large flying fox 299 265
No Yes Sorex araneus 76_1 European shrew 213 190
No Yes Erinaceus europaeus 76 Western European hedgehog 214 202
No Yes Procavia capensis 76_1 Cape rock hyrax 241 216
No Yes Loxodonta africana 76_3 African savanna elephant 436 400
No Yes Echinops telfairi 76 Small Madagascar hedgehog 228 208
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 444 388
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 202 184
No Yes Macropus eugenii 76_1.0 Tammar wallaby 216 200
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 392 351
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 399 360
No Yes Ornithorhynchus anatinus 76_5 Platypus 259 238
No Yes Saccoglossus kowalevskii v3.0   558 512
No Yes Petromyzon marinus 76_7.0 Sea lamprey 170 155
No Yes Meleagris gallopavo 76_2 Turkey 262 238
No Yes Gallus gallus 76_4 Chicken 298 266
No Yes Anas platyrhynchos 76_1.0 Mallard 253 229
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 228
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 270 241
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 378 353
No Yes Anolis carolinensis 76_2.0 Green anole 326 288
No Yes Xenopus laevis African clawed frog 652 593
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 472 415
No Yes Latimeria chalumnae 76_1 Coelacanth 484 444
No Yes Lepisosteus oculatus 76 Spotted gar 469 417
No Yes Gadus morhua 76_1 Atlantic cod 401 361
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 400 354
No Yes Takifugu rubripes 76_4 Torafugu 1021 919
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 550 498
No Yes Oryzias latipes 76_1 Japanese medaka 461 402
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 389 342
No Yes Poecilia formosa 76 Amazon molly 507 449
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 621 568
No Yes Astyanax mexicanus 76 Mexican tetra 441 397
No Yes Danio rerio 76_9 Zebrafish 794 717
No Yes Oikopleura dioica   194 182
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 201 177
No Yes Ciona intestinalis 76 Vase tunicate 161 141
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 610 569
No Yes Adineta vaga   821 650
No Yes Octopus bimaculoides 280   315 276
No Yes Crassostrea gigas 22 Pacific oyster 352 314
No Yes Lottia gigantea Owl limpet 333 288
No Yes Helobdella robusta   326 302
No Yes Capitella sp. I   265 240
No Yes Danaus plexippus OGS1.0 Monarch butterfly 138 125
No Yes Heliconius melpomene Postman butterfly 118 110
No Yes Bombyx mori Domestic silkworm 89 83
No Yes Nasonia vitripennis Jewel wasp 144 120
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 194 178
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 158 142
No Yes Linepithema humile v1.1 Argentine ant 162 141
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 158 139
No Yes Solenopsis invicta v.2.2.3 Red fire ant 146 130
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 161 141
No Yes Atta cephalotes v1.1   151 133
No Yes Camponotus floridanus v3.3 Florida carpenter ant 165 146
No Yes Lucilia cuprina Australian sheep blowfly 130 120
No Yes Drosophila grimshawi 1.3   162 144
No Yes Drosophila willistoni 1.3   160 143
No Yes Drosophila pseudoobscura 2.13   193 174
No Yes Drosophila persimilis 1.3   179 167
No Yes Drosophila suzukii   170 149
No Yes Drosophila yakuba 1.3   163 149
No Yes Drosophila simulans 1.3   135 124
No Yes Drosophila sechellia 1.3   159 145
No Yes Drosophila melanogaster 76_5 Fruit fly 360 318
No Yes Drosophila erecta 1.3   162 148
No Yes Drosophila ananassae 1.3   170 154
No Yes Drosophila virilis 1.2   163 148
No Yes Drosophila mojavensis 1.3   161 145
No Yes Megaselia scalaris 22   53 47
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 195 162
No Yes Culex pipiens quinquefasciatus Southern house mosquito 217 170
No Yes Anopheles darlingi 22 American malaria mosquito 100 91
No Yes Anopheles gambiae 49_3j African malaria mosquito 144 128
No Yes Tribolium castaneum 3.0 Red flour beetle 174 155
No Yes Pediculus humanus corporis (Early assembly) Human body louse 158 137
No Yes Acyrthosiphon pisum Pea aphid 130 115
No Yes Rhodnius prolixus 22   130 117
No Yes Daphnia pulex Common water flea 249 224
No Yes Strigamia maritima 22   216 188
No Yes Sarcoptes scabiei   86 78
No Yes Tetranychus urticae Two-spotted spider mite 142 125
No Yes Ixodes scapularis (Preliminary) Black-legged tick 175 158
No Yes Pristionchus pacificus   303 254
No Yes Meloidogyne incognita Southern root-knot nematode 262 226
No Yes Meloidogyne hapla   122 105
No Yes Onchocerca volvulus 22   132 117
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 158 136
No Yes Caenorhabditis japonica   138 123
No Yes Caenorhabditis brenneri   498 407
No Yes Caenorhabditis remanei   409 356
No Yes Caenorhabditis elegans 76_235 Roundworm 323 263
No Yes Caenorhabditis briggsae 2   236 208
No Yes Trichinella spiralis 22   77 69
No Yes Hymenolepis microstoma   120 105
No Yes Echinococcus multilocularis   124 110
No Yes Echinococcus granulosus   116 103
No Yes Taenia solium Pork tapeworm 124 113
No Yes Schistosoma mansoni   132 118
No Yes Mnemiopsis leidyi Sea walnut 120 113
No Yes Thelohanellus kitauei   33 29
No Yes Acropora digitifera v1.0   286 253
No Yes Nematostella vectensis 1.0 Starlet sea anemone 328 294
No Yes Hydra vulgaris   167 155
No Yes Amphimedon queenslandica   688 645
No Yes Trichoplax adhaerens   114 99
No Yes Proterospongia sp. ATCC 50818   124 113
No Yes Monosiga brevicollis   110 100
No Yes Sphaeroforma arctica JP610   106 104
No Yes Capsaspora owczarzaki ATCC 30864   134 126
No Yes Conidiobolus coronatus NRRL28638 v1.0   67 61
No Yes Mortierella verticillata NRRL 6337   128 113
No Yes Phycomyces blakesleeanus   109 96
No Yes Rhizopus oryzae RA 99-880   84 74
No Yes Mucor circinelloides   119 103
No Yes Rhizomucor miehei CAU432   96 84
No Yes Malassezia globosa CBS 7966   68 64
No Yes Sporisorium reilianum 22   65 58
No Yes Ustilago maydis   63 56
No Yes Mixia osmundae IAM 14324 v1.0   69 58
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   96 84
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   179 163
No Yes Melampsora laricis-populina   96 87
No Yes Rhodotorula graminis WP1 v1.0   73 63
No Yes Sporobolomyces roseus IAM 13481   50 41
No Yes Microbotryum violaceum 22   84 67
No Yes Wallemia sebi v1.0   51 42
No Yes Sphaerobolus stellatus v1.0   160 123
No Yes Piloderma croceum F 1598 v1.0   166 129
No Yes Serpula lacrymans var. lacrymans S7.9   90 75
No Yes Coniophora puteana   102 82
No Yes Hydnomerulius pinastri v2.0   117 95
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   120 98
No Yes Pisolithus microcarpus 441 v1.0   122 99
No Yes Pisolithus tinctorius Marx 270 v1.0   131 105
No Yes Scleroderma citrinum Foug A v1.0   111 91
No Yes Coprinopsis cinerea okayama7 130 v3   101 84
No Yes Pleurotus ostreatus Oyster mushroom 111 91
No Yes Amanita thiersii Skay4041 v1.0   100 84
No Yes Amanita muscaria Koide v1.0 Fly agaric 133 103
No Yes Galerina marginata v1.0   153 120
No Yes Hebeloma cylindrosporum h7 v2.0   118 94
No Yes Laccaria bicolor S238N-H82   140 107
No Yes Agaricus bisporus var. bisporus   91 71
No Yes Schizophyllum commune   135 106
No Yes Stereum hirsutum FP-91666 SS1 v1.0   112 91
No Yes Heterobasidion annosum   99 78
No Yes Gloeophyllum trabeumv1.0   102 83
No Yes Punctularia strigosozonata v1.0   114 92
No Yes Sebacina vermifera MAFF 305830 v1.0   152 108
No Yes Fomitiporia mediterranea v1.0   90 75
No Yes Tulasnella calospora AL13/4D v1.0   130 107
No Yes Postia placenta   133 109
No Yes Wolfiporia cocos MD-104 SS10 v1.0   117 94
No Yes Fomitopsis pinicolav1.0   125 107
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   122 105
No Yes Phanerochaete chrysosporium RP-78 2.1   83 59
No Yes Dichomitus squalens   125 96
No Yes Trametes versicolor v1.0   136 105
No Yes Tremella mesenterica Witches' butter 66 56
No Yes Daldinia eschscholzii EC12 v1.0   100 81
No Yes Apiospora montagnei NRRL 25634 v1.0   116 98
No Yes Magnaporthe poae ATCC 64411 22   85 68
No Yes Magnaporthe grisea 70-15   83 71
No Yes Podospora anserina   94 81
No Yes Sporotrichum thermophile ATCC 42464   80 67
No Yes Thielavia terrestris NRRL 8126   83 72
No Yes Chaetomium globosum CBS 148.51   83 68
No Yes Neurospora tetrasperma   90 73
No Yes Neurospora discreta FGSC 8579   90 76
No Yes Neurospora crassa OR74A   89 76
No Yes Cryphonectria parasitica Chestnut blight fungus 86 71
No Yes Verticillium albo-atrum VaMs.102   77 66
No Yes Verticillium dahliae VdLs.17   83 71
No Yes Acremonium alcalophilumv 1.0   75 66
No Yes Glomerella graminicola 22   104 87
No Yes Fusarium graminearum   90 80
No Yes Nectria haematococca mpVI   102 84
No Yes Fusarium oxysporum f. sp. lycopersici 4286   91 84
No Yes Fusarium verticillioides 7600   83 73
No Yes Trichoderma asperellum CBS 433.97 v1.0   96 77
No Yes Trichoderma atroviride   84 66
No Yes Trichoderma citrinoviride v1.0   88 70
No Yes Trichoderma reesei 1.2   87 70
No Yes Trichoderma virens Gv29-8   88 69
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   85 68
No Yes Trichoderma harzianum CBS 226.95 v1.0   95 77
No Yes Amorphotheca resinae v1.0 Creosote fungus 105 82
No Yes Botrytis cinerea B05.10   100 81
No Yes Sclerotinia sclerotiorum   99 81
No Yes Blumeria graminis 22   72 60
No Yes Didymella exigua CBS 183.55 v1.0   120 101
No Yes Leptosphaeria maculans 22   109 94
No Yes Setosphaeria turcica v1.0   111 91
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   106 91
No Yes Cochliobolus victoriae FI3 v1.0   106 93
No Yes Cochliobolus carbonum 26-R-13 v1.0   103 90
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 86 74
No Yes Alternaria brassicicola   95 79
No Yes Cochliobolus lunatus m118 v2.0   105 89
No Yes Pyrenophora teres f. teres 22   121 102
No Yes Pyrenophora tritici-repentis   108 92
No Yes Stagonospora nodorum   146 130
No Yes Mycosphaerella graminicola IPO323   121 101
No Yes Zasmidium cellare ATCC 36951 v1.0   147 125
No Yes Dothistroma septosporum   123 105
No Yes Septoria musiva v1.0   108 90
No Yes Mycosphaerella fijiensis CIRAD86   97 83
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   110 88
No Yes Paracoccidioides brasiliensis Pb18   69 56
No Yes Coccidioides posadasii RMSCC 3488   87 75
No Yes Coccidioides immitis RS   93 81
No Yes Ajellomyces dermatitidis SLH14081   84 74
No Yes Histoplasma capsulatum class NAmI strain WU24   74 66
No Yes Microsporum canis CBS 113480   80 73
No Yes Trichophyton equinum CBS 127.97   84 72
No Yes Trichophyton verrucosum HKI 0517   60 54
No Yes Arthroderma benhamiae CBS 112371   63 55
No Yes Trichophyton tonsurans CBS 112818   84 74
No Yes Trichophyton rubrum CBS 118892   83 73
No Yes Uncinocarpus reesii 1704   72 64
No Yes Aspergillus zonatus v1.0   87 76
No Yes Penicillium chrysogenum Wisconsin 54-1255   98 84
No Yes Penicillium chrysogenum v1.0   92 78
No Yes Aspergillus acidus v1.0   91 81
No Yes Aspergillus fumigatus Af293   83 71
No Yes Aspergillus brasiliensis v1.0   93 81
No Yes Aspergillus nidulans FGSC A4   80 72
No Yes Aspergillus sydowii v1.0   104 88
No Yes Aspergillus versicolor v1.0   100 86
No Yes Aspergillus glaucus   94 78
No Yes Aspergillus carbonarius ITEM 5010   80 69
No Yes Neosartorya fischeri NRRL 181   88 74
No Yes Aspergillus terreus NIH2624   73 60
No Yes Aspergillus tubingensis v1.0   87 76
No Yes Aspergillus wentii v1.0   99 84
No Yes Aspergillus oryzae RIB40   71 62
No Yes Aspergillus niger 22   82 72
No Yes Aspergillus niger ATCC 1015   53 49
No Yes Aspergillus flavus NRRL3357   66 59
No Yes Aspergillus clavatus NRRL 1   84 73
No Yes Penicillium marneffei ATCC 18224   97 79
No Yes Tuber melanosporum Mel28 22   77 67
No Yes Tuber melanosporum Vittad Perigord truffle 82 70
No Yes Hansenula polymorpha v2.0   48 44
No Yes Dekkera bruxellensis CBS 2499 v2.0   49 48
No Yes Pichia membranifaciensv1.0   50 47
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   54 51
No Yes Candida dubliniensis CD36   50 46
No Yes Candida tropicalis MYA-3404   54 50
No Yes Candida parapsilosis   51 47
No Yes Candida albicans SC5314   50 46
No Yes Lodderomyces elongisporus NRRL YB-4239   52 49
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   61 53
No Yes Pichia stipitis CBS 6054   51 48
No Yes Candida guilliermondii ATCC 6260   55 51
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   52 49
No Yes Debaromyces hansenii   52 48
No Yes Wickerhamomyces anomalus   63 59
No Yes Pichia pastoris GS115   56 52
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   39 38
No Yes Yarrowia lipolytica CLIB122   66 60
No Yes Candida lusitaniae ATCC 42720   55 50
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   50 45
No Yes Vanderwaltozyma polyspora DSM 70294   47 44
No Yes Candida glabrata CBS138   50 46
No Yes Kluyveromyces thermotolerans CBS 6340   54 50
No Yes Lachancea kluyveri   55 51
No Yes Kluyveromyces waltii   48 45
No Yes Ashbya gossypii ATCC 10895   46 43
No Yes Zygosaccharomyces rouxii   52 48
No Yes Saccharomyces mikatae MIT   46 43
No Yes Saccharomyces paradoxus MIT   51 47
No Yes Saccharomyces cerevisiae 76 Baker's yeast 53 50
No Yes Saccharomyces bayanus MIT   49 46
No Yes Kluyveromyces lactis   47 45
No Yes Schizosaccharomyces cryophilus OY26 22   68 59
No Yes Schizosaccharomyces octosporus yFS286   67 59
No Yes Schizosaccharomyces japonicus yFS275   61 55
No Yes Schizosaccharomyces pombe Fission yeast 68 59
No Yes Catenaria anguillulae PL171 v1.0   113 95
No Yes Allomyces macrogynus ATCC 38327   203 173
No Yes Spizellomyces punctatus DAOM BR117   97 88
No Yes Dictyostelium discoideum   195 165
No Yes Dictyostelium purpureum   278 252
No Yes Entamoeba dispar 1.2   96 76
No Yes Entamoeba invadens 1.2   107 75
No Yes Entamoeba histolytica 1   99 75
No Yes Selaginella moellendorffii   563 512
No Yes Pinus taeda Loblolly pine 528 448
No Yes Picea abies Norway spruce 366 343
No Yes Eucalyptus grandis v201 Rose gum 795 721
No Yes Theobroma cacao B97-61/B2 v1 Cacao 534 486
No Yes Gossypium raimondii v221   1648 1543
No Yes Citrus clementina v165   743 657
No Yes Citrus sinensis v154 Sweet orange 916 841
No Yes Thellungiella halophila v173   623 567
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 937 843
No Yes Capsella rubella v183   710 616
No Yes Arabidopsis lyrata Lyrate rockcress 719 630
No Yes Arabidopsis thaliana 10 Thale cress 863 771
No Yes Carica papaya Papaya 398 367
No Yes Medicago truncatula Barrel medic 1014 921
No Yes Phaseolus vulgaris v186 French bean 701 665
No Yes Glycine max v109 Soybean 1194 1130
No Yes Cucumis sativus v122 Cucumber 630 594
No Yes Fragaria vesca Wild strawberry 618 548
No Yes Malus domestica v196 Apple 963 888
No Yes Prunus persica v139 Peach 539 493
No Yes Linum usitatissimum v200 Flax 786 732
No Yes Manihot esculenta v147 Cassava 743 688
No Yes Populus trichocarpa v156 Black cottonwood 867 802
No Yes Vitis vinifera Wine grape 402 371
No Yes Mimulus guttatus v140 Spotted monkey flower 693 620
No Yes Solanum lycopersicum v.2.3 Tomato 593 550
No Yes Solanum tuberosum Potato 830 770
No Yes Actinidia chinensis Hongyang   558 520
No Yes Aquilegia coerulea v195   818 719
No Yes Triticum urartu 22   400 345
No Yes Triticum aestivum 22 Bread wheat 1306 1135
No Yes Aegilops tauschii 22   472 403
No Yes Brachypodium distachyon Stiff brome 694 642
No Yes Oryza barthii 22 African wild rice 734 593
No Yes Oryza meridionalis 22   760 642
No Yes Oryza glumaepatula 22   863 736
No Yes Oryza glaberrima African rice 556 493
No Yes Oryza punctata 22   815 718
No Yes Oryza nivara 22   889 764
No Yes Oryza brachyantha 22 Malo sina 502 444
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 880 793
No Yes Oryza sativa v193 Rice 872 785
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 579 531
No Yes Panicum virgatum v202 Switchgrass 1218 1075
No Yes Setaria italica v164 Foxtail millet 753 684
No Yes Zea mays subsp. mays Maize 1030 970
No Yes Zea mays v181 Maize 1104 1040
No Yes Sorghum bicolor Sorghum 629 567
No Yes Musa balbisiana Balbis banana 622 592
No Yes Musa acuminata 22 Wild Malaysian banana 701 660
No Yes Amborella trichopoda 22   343 319
No Yes Physcomitrella patens   352 312
No Yes Coccomyxa subellipsoidea sp. C-169 v2   117 102
No Yes Asterochloris sp. Cgr/DA1pho v1.0   88 81
No Yes Chlorella variabilis sp. NC64A   141 127
No Yes Chlorella vulgaris   92 83
No Yes Volvox carteri f. nagariensis   138 124
No Yes Volvox carteri v199   135 122
No Yes Chlamydomonas reinhardtii 4.0   143 133
No Yes Ostreococcus sp. RCC809   88 83
No Yes Ostreococcus lucimarinus CCE9901   88 81
No Yes Ostreococcus tauri   71 67
No Yes Bathycoccus prasinos   84 78
No Yes Micromonas sp. RCC299   127 117
No Yes Micromonas pusilla CCMP1545 v3.0   123 113
No Yes Cyanidioschyzon merolae strain 10D 22   54 50
No Yes Cyanidioschyzon merolae   54 50
No Yes Porphyridium purpureum 02_2012   84 83
No Yes Thecamonas trahens ATCC 50062   176 146
No Yes Bigelowiella natans CCMP2755 22   226 191
No Yes Giardia lamblia 2.3   73 67
No Yes Cyanophora paradoxa   192 186
No Yes Leishmania mexicana 2.4   77 74
No Yes Leishmania major strain Friedlin   80 78
No Yes Leishmania infantum JPCM5 2.4   77 74
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   76 73
No Yes Trypanosoma vivax   65 59
No Yes Trypanosoma cruzi strain CL Brener   64 60
No Yes Trypanosoma congolense 2.4   88 81
No Yes Trypanosoma brucei gambiense v4.1   75 69
No Yes Trypanosoma brucei TREU927 v4.1   74 69
No Yes Ectocarpus siliculosus   165 159
No Yes Aureococcus anophagefferens   149 131
No Yes Albugo laibachii 22   118 114
No Yes Pythium iwayamai DAOM BR242034 22   164 148
No Yes Pythium arrhenomanes ATCC 12531 22   167 146
No Yes Pythium ultimum v1.7-2   162 150
No Yes Pythium aphanidermatum DAOM BR444 22   154 136
No Yes Pythium irregulare DAOM BR486 22   171 157
No Yes Pythium vexans DAOM BR484 22   170 148
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 149 137
No Yes Phytophthora sojae 1.1   168 158
No Yes Phytophthora infestans T30-4   163 150
No Yes Phytophthora capsici   116 112
No Yes Hyaloperonospora arabidopsidis 22   115 107
No Yes Phaeodactylum tricornutumCCAP 1055/1   92 89
No Yes Fragilariopsis cylindrus   242 222
No Yes Thalassiosira pseudonana CCMP1335   101 95
No Yes Perkinsus marinus ATCC 50983   248 229
No Yes Paramecium tetraurelia   880 746
No Yes Tetrahymena thermophila SB210 1   402 322
No Yes Ichthyophthirius multifiliis strain G5   77 65
No Yes Cryptosporidium hominis   45 45
No Yes Cryptosporidium muris   58 56
No Yes Cryptosporidium parvum Iowa II   48 48
No Yes Neospora caninum   70 67
No Yes Toxoplasma gondii VEG   70 67
No Yes Toxoplasma gondii ME49   76 73
No Yes Toxoplasma gondii GT1   65 62
No Yes Babesia bovis T2Bo   78 78
No Yes Theileria parva   39 39
No Yes Theileria annulata   41 41
No Yes Plasmodium falciparum 3D7   52 50
No Yes Plasmodium vivax SaI-1 7.0   50 48
No Yes Plasmodium knowlesi strain H   52 50
No Yes Plasmodium yoelii ssp. yoelii 1   43 41
No Yes Plasmodium chabaudi   49 47
No Yes Plasmodium berghei ANKA   52 49
No Yes Symbiodinium minutum clade B1 v1.2   510 467
No Yes Naegleria gruberi   128 109
No Yes Trichomonas vaginalis   179 162
No Yes Guillardia theta CCMP2712 v1.0   253 235
No Yes Emiliania huxleyi CCMP1516   763 735
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Gloeobacter violaceus PCC 7421   2 2
No Yes Candidatus Phytoplasma mali   1 1
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nakamurella multipartita DSM 44233   2 2
No Yes Modestobacter marinus   2 2
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Kineococcus radiotolerans SRS30216   4 4
No Yes Catenulispora acidiphila DSM 44928   2 2
No Yes Frankia sp. EAN1pec   1 1
No Yes Frankia alni ACN14a   2 2
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   3 3
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   3 3
No Yes Streptomyces bingchenggensis BCW-1   4 4
No Yes Streptomyces violaceusniger Tu 4113   3 3
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   3 3
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   4 4
No Yes Pseudonocardia dioxanivorans CB1190   3 3
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   2 2
No Yes Kribbella flavida DSM 17836   2 2
No Yes Nocardioides sp. JS614   2 2
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   2 2
No Yes Actinoplanes sp. SE50/110   2 2
No Yes Actinoplanes missouriensis 431   2 2
No Yes Tsukamurella paurometabola DSM 20162   2 2
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   2 2
No Yes Rhodococcus jostii RHA1   3 3
No Yes Rhodococcus equi 103S   2 2
No Yes Rhodococcus opacus B4   2 2
No Yes Rhodococcus erythropolis PR4   2 2
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium sp. JLS   2 2
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium rhodesiae NBB3   2 2
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium smegmatis str. MC2 155   2 2
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Renibacterium salmoninarum ATCC 33209   2 2
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Desulfotomaculum kuznetsovii DSM 6115   1 1
No Yes Desulfotomaculum ruminis DSM 2154   1 1
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   1 1
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   1 1
No Yes Thermoanaerobacter sp. X514   1 1
No Yes Thermoanaerobacter wiegelii Rt8.B1   1 1
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Candidatus Amoebophilus asiaticus 5a2   10 10
No Yes Candidatus Cardinium hertigii   1 1
No Yes Fibrella aestuarina   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   2 2
No Yes Parachlamydia acanthamoebae UV-7   3 3
No Yes Simkania negevensis Z   2 2
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Spirochaeta caldaria DSM 7334   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Babela massiliensis   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   2 2
No Yes Myxococcus fulvus HW-1   2 2
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Sphingobium sp. SYK-6   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Coxiella burnetii Dugway 5J108-111   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Legionella pneumophila str. Corby   1 1
No Yes Candidatus Caldiarchaeum subterraneum   3 3
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Nitrosopumilus maritimus SCM1   2 2
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanothermococcus okinawensis IH1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 732 633
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 278 254
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 171 151
No Yes Ascaris suum Victoria/Ghent Pig roundworm 149 122
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 260 223
No Yes Cryptococcus neoformans var. grubii H99   63 53
No Yes Cryptococcus neoformans B-3501A   70 59
No Yes Cryptococcus neoformans JEC21   61 53
No Yes Paracoccidioides brasiliensis Pb01   69 58
No Yes Paracoccidioides brasiliensis Pb03   71 59
No Yes Coccidioides posadasii str. Silveira   88 77
No Yes Coccidioides immitis RMSCC 3703   68 59
No Yes Coccidioides immitis RMSCC 2394   85 74
No Yes Coccidioides immitis H538.4   74 67
No Yes Ajellomyces dermatitidis ER-3   89 76
No Yes Histoplasma capsulatum H143   62 58
No Yes Histoplasma capsulatum H88   80 70
No Yes Histoplasma capsulatum G186AR   77 67
No Yes Aspergillus fumigatus A1163   84 72
No Yes Candida albicans WO-1   48 44
No Yes Saccharomyces cerevisiae UC5   42 39
No Yes Saccharomyces cerevisiae PW5   44 41
No Yes Saccharomyces cerevisiae FL100   26 25
No Yes Saccharomyces cerevisiae CLIB382   2 2
No Yes Saccharomyces cerevisiae CLIB324   24 22
No Yes Saccharomyces cerevisiae CBS7960   36 34
No Yes Saccharomyces cerevisiae YJM269   37 35
No Yes Saccharomyces cerevisiae T7   52 49
No Yes Saccharomyces cerevisiae FostersB   29 29
No Yes Saccharomyces cerevisiae FostersO   41 38
No Yes Saccharomyces cerevisiae VL3   39 36
No Yes Saccharomyces cerevisiae Vin13   37 35
No Yes Saccharomyces cerevisiae LalvinQA23   43 41
No Yes Saccharomyces cerevisiae AWRI796   38 37
No Yes Saccharomyces cerevisiae Sigma1278b   52 49
No Yes Saccharomyces cerevisiae W303   52 49
No Yes Saccharomyces cerevisiae JAY291   52 49
No Yes Saccharomyces cerevisiae AWRI1631   38 35
No Yes Saccharomyces cerevisiae YPS163   19 19
No Yes Saccharomyces cerevisiae M22   14 14
No Yes Saccharomyces cerevisiae T73   22 20
No Yes Saccharomyces cerevisiae CLIB215   36 35
No Yes Saccharomyces cerevisiae Y10   17 16
No Yes Saccharomyces cerevisiae YJM789   53 50
No Yes Saccharomyces cerevisiae YJM789   53 50
No Yes Saccharomyces cerevisiae RM11-1a   53 50
No Yes Saccharomyces cerevisiae RM11-1a   53 50
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 53 50
No Yes Schizosaccharomyces pombe 972h-   68 59
No Yes Batrachochytrium dendrobatidis JEL423   79 73
No Yes Batrachochytrium dendrobatidis JAM81   87 80
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 499 459
No Yes Hordeum vulgare 22 Domesticated barley 977 863
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 616 557
No Yes Trypanosoma brucei Lister 427 v4.1   75 69
No Yes Neospora caninum Nc-Liverpool 6.2   70 67
No Yes Plasmodium falciparum HB3   47 45
No Yes Plasmodium falciparum Dd2   34 32
No Yes Dactylococcopsis salina PCC 8305   2 2
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Frankia sp. EuI1c   2 2
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   2 2
No Yes Streptomyces rapamycinicus NRRL 5491   2 2
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   2 2
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces collinus Tu 365   3 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   4 4
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Actinoplanes friuliensis DSM 7358   3 3
No Yes Rhodococcus erythropolis CCM2595   3 3
No Yes Nocardia brasiliensis ATCC 700358   2 2
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium sp. KMS   2 2
No Yes Mycobacterium sp. MCS   2 2
No Yes Mycobacterium smegmatis str. MC2 155   2 2
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Thermoanaerobacter sp. X513   1 1
No Yes Singulisphaera acidiphila DSM 18658   2 2
No Yes Anaeromyxobacter sp. K   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-C   1 1
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Burkholderia lata   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Coxiella burnetii CbuG_Q212   1 1
No Yes Legionella pneumophila str. Paris   3 2
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   3 2
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   3 2
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   3 2
No Yes Legionella pneumophila subsp. pneumophila   3 2
No Yes Legionella pneumophila subsp. pneumophila   3 2
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   3 2
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1475 1373
No Yes Homo sapiens (NCBI version) Human 647 583
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 361 322
No Yes Heliconius numata (Incomplete)   38 35
No Yes Loa loa v3.3 (Request) Eye worm 143 127
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 121 107
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 109 94
No Yes Moniliophthora perniciosa FA553 (Genome survey)   27 26
No Yes Encephalitozoon intestinalis (endoparasite)   24 24
No Yes Encephalitozoon cuniculi (endoparasite)   25 25
No Yes Picea sitchensis (Incomplete) Sitka spruce 49 47
No Yes Lotus japonicus (Early assembly)   429 400
No Yes Malus x domestica (Duplicate) Apple 963 888
No Yes Ricinus communis (Early assembly) Castor bean 447 414
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   915 849
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 575 535
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 593 550
No Yes Phoenix dactylifera (Early draft) Date palm 209 196
No Yes Guillardia theta (nucleomorph)   3 3
No Yes Homo sapiens 69_37 Human 462 420
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 340 306
No Yes Gorilla gorilla 69_3.1 Western gorilla 350 321
No Yes Pongo abelii 69_2 Sumatran orangutan 339 307
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 333 297
No Yes Macaca mulatta 69_1 Rhesus monkey 348 314
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 368 331
No Yes Otolemur garnettii 69_3 Small-eared galago 356 321
No Yes Microcebus murinus 69_1 Gray mouse lemur 229 213
No Yes Rattus norvegicus 69_3.4 Norway rat 320 286
No Yes Mus musculus 69_38 House mouse 360 324
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 232 214
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 314 289
No Yes Cavia porcellus 69_3 Domestic guinea pig 315 283
No Yes Oryctolagus cuniculus 69_2 Rabbit 328 296
No Yes Ochotona princeps 69 American pika 258 237
No Yes Tupaia belangeri 69 Northern tree shrew 206 189
No Yes Sus scrofa 69_10.2 Pig 337 301
No Yes Bos taurus 69_3.1 Cattle 343 307
No Yes Vicugna pacos 69_1 Alpaca 185 165
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 297 266
No Yes Mustela putorius furo 69_1.0 Domestic ferret 322 289
No Yes Ailuropoda melanoleuca 69_1 Giant panda 332 296
No Yes Canis familiaris 69_3.1 Dog 335 298
No Yes Felis catus 69 Domestic cat 217 194
No Yes Equus caballus 69_2 Horse 319 284
No Yes Myotis lucifugus 69_2.0 Little brown bat 349 315
No Yes Pteropus vampyrus 69_1 Large flying fox 299 265
No Yes Sorex araneus 69_1 European shrew 213 190
No Yes Erinaceus europaeus 69 Western European hedgehog 214 202
No Yes Procavia capensis 69_1 Cape rock hyrax 241 216
No Yes Loxodonta africana 69_3 African savanna elephant 353 322
No Yes Echinops telfairi 69 Small Madagascar hedgehog 228 208
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 209 188
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 202 184
No Yes Macropus eugenii 69_1.0 Tammar wallaby 216 200
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 332 299
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 376 341
No Yes Ornithorhynchus anatinus 69_5 Platypus 234 217
No Yes Petromyzon marinus 69_7.0 Sea lamprey 159 145
No Yes Meleagris gallopavo 69_2 Turkey 236 212
No Yes Gallus gallus 69_2 Chicken 261 234
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 247 220
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 338 313
No Yes Anolis carolinensis 69_2.0 Green anole 312 279
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 396 353
No Yes Latimeria chalumnae 69_1 Coelacanth 399 366
No Yes Gadus morhua 69_1 Atlantic cod 379 341
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 351 311
No Yes Takifugu rubripes 69_4 Torafugu 360 316
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 433 391
No Yes Oryzias latipes 69_1 Japanese medaka 389 337
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 387 340
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 522 475
No Yes Danio rerio 69_9 Zebrafish 533 483
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 114 102
No Yes Ciona intestinalis 69 Vase tunicate 148 129
No Yes Drosophila melanogaster 69_5 Fruit fly 168 153
No Yes Caenorhabditis elegans 69_215 Roundworm 218 194
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 53 50
No Yes Arabidopsis thaliana 10 Thale cress 660 581
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   4 4
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   7 7
No Yes Combined (meta-genome)   2 2
No Yes Core Eukaryotic Genes 458 (CEGMA)   12 12
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   4 4
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   14 13
No Yes Dump top (Dump top) (meta-genome)   9 9
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   3 3
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   14 14
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   15 15
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   11 11
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   9 9
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   2 2
No Yes NCBI 2017_08 genome   319979 287388
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   12 12
No Yes Protozoadb 2010_08 (Protozoadb)   2385 2206
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   55 54
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   34 33
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   24 24
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   21 21
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   20 20
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   24646 21986
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   3 3
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   17 17
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   6 6
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   298266 266696
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   2232 2204
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   510 507
No Yes PDB chains (SCOP 1.75) (PDB)   32 32
No Yes Protein Data Bank (all PDB sequenc)   626 573
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   692 692
No Yes TargetDB (Targets)   806 721
No Yes UniProt viral sequences (Viral)   500 498

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.