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DNA-binding pseudobarrel domain superfamily domain assignments
in
Theobroma cacao B97-61/B2 v1

Assignment details

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Theobroma cacao B97-61/B2 v1 has 150 significant domains in 125 proteins.

     

Sequence ID   Evalue   Region   Family  
Tc00_g005150   6.2e-23   117-258   B3 DNA binding domain  
Tc00_g010320   0.0000000000000667   3-101   B3 DNA binding domain  
Tc00_g022030   4.51e-17   97-202   B3 DNA binding domain  
Tc00_g027220   7.32e-18   184-278   B3 DNA binding domain  
Tc00_g027540   0.00000000000000216   4-92   B3 DNA binding domain  
Tc00_g030380   8.83e-25   118-215   B3 DNA binding domain  
Tc00_g030390   2.55e-22   46-136   B3 DNA binding domain  
Tc00_g030400   3.34e-17   159-242   B3 DNA binding domain  
Tc00_g030410   2.75e-24   115-212   B3 DNA binding domain  
Tc00_g033690   0.00000000000824   2-93   B3 DNA binding domain  
Tc00_g044830   0.00000000049   3-90   B3 DNA binding domain  
Tc00_g046380   3.73e-21   29-127   B3 DNA binding domain  
Tc00_g048490   2.62e-30   107-214   B3 DNA binding domain  
Tc00_g049410   0.000000000353   3-96   B3 DNA binding domain  
Tc00_g049850   0.00000000000667   4-81   B3 DNA binding domain  
Tc00_g049860   0.00000000000883   9-74   B3 DNA binding domain  
Tc00_g049890   0.000000000000235   3-81   B3 DNA binding domain  
Tc00_g049900   0.000000000000144   3-91   B3 DNA binding domain  
Tc00_g049930   0.000000000000196   3-90   B3 DNA binding domain  
Tc00_g049940   0.00000000000000209   3-92   B3 DNA binding domain  
Tc00_g049980   0.0000000000000392   3-91   B3 DNA binding domain  
Tc00_g050080   0.00000942   3-68   B3 DNA binding domain  
Tc00_g050090   0.00000000000161   4-89   B3 DNA binding domain  
  0.0000000104   255-307   B3 DNA binding domain  
Tc00_g050100   0.000000000000196   4-94   B3 DNA binding domain  
Tc00_g051510   3.4e-36   121-277   B3 DNA binding domain  
Tc00_g069900   0.000000000000981   4-80   B3 DNA binding domain  
Tc00_g073240   0.00000000000000114   4-95   B3 DNA binding domain  
Tc00_g073280   3.66e-16   4-95   B3 DNA binding domain  
Tc00_g073290   5.89e-16   4-97   B3 DNA binding domain  
Tc00_g073300   0.000000000000129   316-408   B3 DNA binding domain  
Tc00_g073340   0.000000000196   5-94   B3 DNA binding domain  
Tc00_g073350   0.000000000175   5-94   B3 DNA binding domain  
Tc00_g073360   0.0000000000902   5-95   B3 DNA binding domain  
Tc00_g073370   0.0000000000235   6-99   B3 DNA binding domain  
Tc00_g073380   0.0000000000746   5-93   B3 DNA binding domain  
Tc00_g088650   2.88e-49   111-256   B3 DNA binding domain  
Tc01_g000870   0.00000000000155   122-231   B3 DNA binding domain  
Tc01_g000880   0.000000000000451   115-223   B3 DNA binding domain  
Tc01_g000890   0.000000000000114   107-216   B3 DNA binding domain  
Tc01_g004120   1.1e-25   25-124   B3 DNA binding domain  
  1.73e-16   294-400   B3 DNA binding domain  
Tc01_g004140   4.9e-23   7-104   B3 DNA binding domain  
  5.89e-19   168-254   B3 DNA binding domain  
Tc01_g004150   3.73e-26   15-113   B3 DNA binding domain  
  1.37e-25   380-483   B3 DNA binding domain  
  1.12e-24   233-339   B3 DNA binding domain  
Tc01_g004160   1e-25   229-335   B3 DNA binding domain  
  2.35e-21   17-110   B3 DNA binding domain  
Tc01_g004170   1.96e-25   20-119   B3 DNA binding domain  
  1e-20   232-335   B3 DNA binding domain  
  3.73e-20   380-484   B3 DNA binding domain  
Tc01_g004180   3.92e-27   15-114   B3 DNA binding domain  
  1.31e-23   739-833   B3 DNA binding domain  
  6.67e-20   487-590   B3 DNA binding domain  
  6.87e-19   857-957   B3 DNA binding domain  
  1.33e-16   216-333   B3 DNA binding domain  
Tc01_g004190   1.59e-27   6-105   B3 DNA binding domain  
  1e-17   169-264   B3 DNA binding domain  
Tc01_g004850   1.18e-23   74-172   B3 DNA binding domain  
Tc01_g005420   0.000000000051   5-70   B3 DNA binding domain  
Tc01_g013970   0.000000000000196   195-305   B3 DNA binding domain  
Tc01_g014930   8.11e-49   113-257   B3 DNA binding domain  
Tc01_g015370   4.19e-26   169-268   B3 DNA binding domain  
Tc01_g024700   1.45e-22   599-693   B3 DNA binding domain  
Tc01_g029450   1.02e-29   92-222   B3 DNA binding domain  
Tc02_g001140   0.00000000294   3-96   B3 DNA binding domain  
Tc02_g001680   0.000000000131   4-106   B3 DNA binding domain  
Tc02_g001820   0.00000000549   6-94   B3 DNA binding domain  
Tc02_g001840   0.00000000112   3-94   B3 DNA binding domain  
Tc02_g001890   0.0000000000000145   21-114   B3 DNA binding domain  
Tc02_g001920   0.000000000122   5-94   B3 DNA binding domain  
Tc02_g001930   0.000000314   5-78   B3 DNA binding domain  
Tc02_g001950   0.0000000000863   6-99   B3 DNA binding domain  
Tc02_g001980   2.16e-19   3-104   B3 DNA binding domain  
  0.000000000157   219-319   B3 DNA binding domain  
Tc02_g002660   0.0000216   10-62   B3 DNA binding domain  
Tc02_g008030   0.0000000000000157   3-92   B3 DNA binding domain  
Tc02_g008040   0.00000000000049   3-103   B3 DNA binding domain  
Tc02_g008050   8.37e-18   4-95   B3 DNA binding domain  
Tc02_g008060   1.57e-18   3-95   B3 DNA binding domain  
Tc02_g008070   0.0000129   10-96   B3 DNA binding domain  
Tc02_g008090   0.0000000179   2-86   B3 DNA binding domain  
Tc02_g008100   0.0000000432   10-99   B3 DNA binding domain  
Tc02_g008110   0.00000294   4-87   B3 DNA binding domain  
Tc02_g008120   0.000000000000183   3-92   B3 DNA binding domain  
Tc02_g008130   0.0000000000000222   3-88   B3 DNA binding domain  
Tc02_g008140   7.26e-24   18-115   B3 DNA binding domain  
  3.53e-17   355-455   B3 DNA binding domain  
Tc02_g008150   1.33e-26   305-405   B3 DNA binding domain  
  1.35e-23   13-107   B3 DNA binding domain  
Tc02_g008160   1.31e-22   160-239   B3 DNA binding domain  
  0.000000000122   31-85   B3 DNA binding domain  
Tc02_g008170   2.94e-23   18-116   B3 DNA binding domain  
  3.34e-18   336-437   B3 DNA binding domain  
Tc02_g008180   1.14e-25   232-332   B3 DNA binding domain  
  8.44e-22   3-96   B3 DNA binding domain  
Tc02_g019690   7.85e-37   136-278   B3 DNA binding domain  
Tc02_g034560   1.19e-31   190-295   B3 DNA binding domain  
Tc03_g015720   8.11e-41   156-289   B3 DNA binding domain  
Tc03_g017230   0.000000000000216   113-222   B3 DNA binding domain  
  0.0000000000451   482-591   B3 DNA binding domain  
Tc03_g017250   0.0000000000981   141-250   B3 DNA binding domain  
Tc03_g022470   5.76e-30   116-224   B3 DNA binding domain  
Tc03_g029280   4.71e-35   126-254   B3 DNA binding domain  
Tc04_g001200   0.0000000000000922   24-111   B3 DNA binding domain  
Tc04_g001240   0.0000137   18-95   B3 DNA binding domain  
Tc04_g001270   0.000000000942   19-119   B3 DNA binding domain  
Tc04_g001290   0.000000000000412   9-97   B3 DNA binding domain  
Tc04_g001300   0.0000000000000451   17-125   B3 DNA binding domain  
Tc04_g003200   1.61e-25   15-113   B3 DNA binding domain  
  6.28e-20   235-331   B3 DNA binding domain  
Tc04_g004970   1.96e-16   101-212   B3 DNA binding domain  
Tc04_g007760   3.79e-19   60-151   B3 DNA binding domain  
Tc04_g015240   5.23e-28   164-260   B3 DNA binding domain  
Tc04_g016290   7.72e-20   319-421   B3 DNA binding domain  
Tc04_g020300   0.0000451   6-71   B3 DNA binding domain  
Tc05_g006450   4.97e-30   115-228   B3 DNA binding domain  
Tc05_g010460   3.53e-31   47-152   B3 DNA binding domain  
Tc05_g012970   0.00000000216   2-96   B3 DNA binding domain  
Tc05_g029730   3.01e-27   231-326   B3 DNA binding domain  
Tc06_g002490   3.66e-43   115-253   B3 DNA binding domain  
Tc06_g012100   4.19e-49   125-269   B3 DNA binding domain  
Tc06_g015190   1.15e-42   168-285   B3 DNA binding domain  
Tc06_g015590   2.22e-19   184-278   B3 DNA binding domain  
Tc06_g016770   2.09e-19   338-437   B3 DNA binding domain  
Tc07_g003200   0.0000000104   2-96   B3 DNA binding domain  
Tc07_g007060   0.00000824   3-103   B3 DNA binding domain  
Tc07_g007150   0.000000000000523   292-394   B3 DNA binding domain  
Tc07_g009650   0.0000000000000334   3-94   B3 DNA binding domain  
Tc07_g009690   0.000000000549   1-78   B3 DNA binding domain  
Tc08_g000720   8.63e-24   123-220   B3 DNA binding domain  
Tc08_g001250   4.71e-25   222-324   B3 DNA binding domain  
  7.26e-25   430-530   B3 DNA binding domain  
  8.24e-23   7-103   B3 DNA binding domain  
Tc08_g001260   1e-18   21-113   B3 DNA binding domain  
  1e-17   269-358   B3 DNA binding domain  
Tc08_g003370   1.96e-46   136-278   B3 DNA binding domain  
Tc08_g009820   1.05e-29   111-231   B3 DNA binding domain  
Tc09_g000890   2.16e-22   139-236   B3 DNA binding domain  
  6.87e-20   10-100   B3 DNA binding domain  
Tc09_g006500   1.57e-38   127-291   B3 DNA binding domain  
Tc09_g009230   0.000000000000051   112-210   B3 DNA binding domain  
Tc09_g021860   4.05e-43   128-266   B3 DNA binding domain  
Tc09_g026330   1.96e-45   158-284   B3 DNA binding domain  
Tc09_g033510   1.31e-28   109-217   B3 DNA binding domain  
Tc09_g035210   1.16e-20   330-433   B3 DNA binding domain  
Tc10_g001580   0.0000000000000137   4-94   B3 DNA binding domain  
Tc10_g005610   3.27e-29   116-225   B3 DNA binding domain  
Tc10_g012760   0.0000863   19-117   B3 DNA binding domain  
 
Weak hits:
Tc00_g049970   0.0118   19-66   B3 DNA binding domain  
Tc02_g000790   0.00589   24-67   B3 DNA binding domain  
Tc02_g002630   0.000255   28-71   B3 DNA binding domain  
Tc02_g002650   0.000108   4-65   B3 DNA binding domain  
Tc02_g002700   0.000471   30-71   B3 DNA binding domain  
Tc02_g002720   0.0208   28-74   B3 DNA binding domain  
Tc07_g002350   0.00167   74-133   B3 DNA binding domain  
Tc07_g009640   0.000647   116-191   B3 DNA binding domain  
Tc08_g013010   0.00706   110-146   B3 DNA binding domain  
Tc10_g010600   0.00022   150-248   B3 DNA binding domain  
Tc10_g010630   0.000235   168-266   B3 DNA binding domain  
Tc10_g012720   0.000369   21-116   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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