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alpha-D-mannose-specific plant lectins superfamily domain assignments
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Theobroma cacao B97-61/B2 v1

Assignment details

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Theobroma cacao B97-61/B2 v1 has 142 significant domains in 127 proteins.

     

Sequence ID   Evalue   Region   Family  
Tc00_g001850   1.19e-21   72-189   alpha-D-mannose-specific plant lectins  
  0.0000000288   151-253   alpha-D-mannose-specific plant lectins  
Tc00_g007970   1.07e-18   66-176   alpha-D-mannose-specific plant lectins  
Tc00_g008240   4.32e-24   80-178   alpha-D-mannose-specific plant lectins  
Tc00_g008250   4.58e-28   7-119   alpha-D-mannose-specific plant lectins  
Tc00_g017930   1.11e-21   94-226   alpha-D-mannose-specific plant lectins  
  0.0000000709   192-281   alpha-D-mannose-specific plant lectins  
Tc00_g019720   1.15e-25   66-159,191-221   alpha-D-mannose-specific plant lectins  
Tc00_g024290   1.31e-27   78-187   alpha-D-mannose-specific plant lectins  
Tc00_g025330   2.62e-18   70-193   alpha-D-mannose-specific plant lectins  
Tc00_g027650   4.97e-26   77-186   alpha-D-mannose-specific plant lectins  
Tc00_g027660   3.27e-30   73-181   alpha-D-mannose-specific plant lectins  
Tc00_g027670   5.23e-26   94-168,200-229   alpha-D-mannose-specific plant lectins  
Tc00_g027680   4.06e-20   74-178   alpha-D-mannose-specific plant lectins  
Tc00_g043360   6.28e-28   90-199   alpha-D-mannose-specific plant lectins  
Tc00_g045580   2.28e-17   88-205   alpha-D-mannose-specific plant lectins  
Tc00_g061780   2.09e-26   99-226   alpha-D-mannose-specific plant lectins  
  0.000000000209   192-292   alpha-D-mannose-specific plant lectins  
Tc00_g072490   6.28e-23   71-204   alpha-D-mannose-specific plant lectins  
  0.000000222   169-263   alpha-D-mannose-specific plant lectins  
Tc00_g072840   3.8e-28   73-182   alpha-D-mannose-specific plant lectins  
Tc00_g072970   5.1e-18   67-184   alpha-D-mannose-specific plant lectins  
  0.00009   147-249   alpha-D-mannose-specific plant lectins  
Tc00_g072980   7.2e-18   86-183   alpha-D-mannose-specific plant lectins  
  0.0116   168-274   alpha-D-mannose-specific plant lectins  
Tc01_g011030   1.27e-17   74-190   alpha-D-mannose-specific plant lectins  
  0.00000000103   167-262   alpha-D-mannose-specific plant lectins  
Tc01_g011040   1.44e-18   78-167   alpha-D-mannose-specific plant lectins  
  0.0000000353   173-276   alpha-D-mannose-specific plant lectins  
Tc01_g011060   3.4e-24   56-192   alpha-D-mannose-specific plant lectins  
  0.0000000011   158-262   alpha-D-mannose-specific plant lectins  
Tc01_g011070   6.67e-23   67-189   alpha-D-mannose-specific plant lectins  
  0.000000000877   169-273   alpha-D-mannose-specific plant lectins  
Tc01_g011090   3.53e-24   27-164   alpha-D-mannose-specific plant lectins  
  0.00000000589   130-233   alpha-D-mannose-specific plant lectins  
Tc01_g011110   0.00000000000523   62-145   alpha-D-mannose-specific plant lectins  
Tc01_g013890   4.45e-17   190-257   alpha-D-mannose-specific plant lectins  
Tc01_g013910   2.49e-24   183-307   alpha-D-mannose-specific plant lectins  
Tc01_g014260   1.83e-19   65-194   alpha-D-mannose-specific plant lectins  
Tc01_g015580   4.86e-21   62-214   alpha-D-mannose-specific plant lectins  
Tc01_g015650   3.8e-21   61-207   alpha-D-mannose-specific plant lectins  
  0.000448   167-266   alpha-D-mannose-specific plant lectins  
Tc01_g015660   2.62e-23   62-192   alpha-D-mannose-specific plant lectins  
Tc01_g015720   2.36e-23   54-189   alpha-D-mannose-specific plant lectins  
Tc01_g015730   3.4e-25   64-210   alpha-D-mannose-specific plant lectins  
Tc01_g015760   1.05e-18   80-196   alpha-D-mannose-specific plant lectins  
  0.0000017   157-251   alpha-D-mannose-specific plant lectins  
Tc01_g015770   3.66e-17   64-173   alpha-D-mannose-specific plant lectins  
Tc01_g035730   1.7e-23   59-203   alpha-D-mannose-specific plant lectins  
Tc02_g014560   6.41e-26   75-180   alpha-D-mannose-specific plant lectins  
Tc02_g014580   4.45e-20   73-182   alpha-D-mannose-specific plant lectins  
Tc02_g014600   2.75e-20   95-201   alpha-D-mannose-specific plant lectins  
Tc02_g029920   0.000000000000327   66-192   alpha-D-mannose-specific plant lectins  
  0.00288   188-257,354-373   alpha-D-mannose-specific plant lectins  
Tc03_g013150   1.31e-21   332-460   alpha-D-mannose-specific plant lectins  
Tc03_g017850   5.76e-25   215-300   alpha-D-mannose-specific plant lectins  
Tc04_g023580   1.8e-20   62-148,175-205   alpha-D-mannose-specific plant lectins  
Tc04_g023590   5.23e-17   74-147,174-204   alpha-D-mannose-specific plant lectins  
  0.0000249   164-268   alpha-D-mannose-specific plant lectins  
Tc05_g003720   8.51e-28   63-206   alpha-D-mannose-specific plant lectins  
Tc05_g003730   9.95e-29   67-209   alpha-D-mannose-specific plant lectins  
Tc05_g003740   3.93e-30   67-209   alpha-D-mannose-specific plant lectins  
Tc05_g003750   1.19e-29   101-243   alpha-D-mannose-specific plant lectins  
  0.0144   283-324   alpha-D-mannose-specific plant lectins  
Tc05_g007240   1.09e-22   60-196   alpha-D-mannose-specific plant lectins  
  0.0204   223-289   alpha-D-mannose-specific plant lectins  
Tc05_g008420   0.0000000000209   92-192   alpha-D-mannose-specific plant lectins  
  0.0134   227-289   alpha-D-mannose-specific plant lectins  
Tc05_g022030   2.36e-26   80-158,190-221   alpha-D-mannose-specific plant lectins  
Tc05_g022060   1.68e-25   74-199   alpha-D-mannose-specific plant lectins  
Tc06_g001710   9.03e-24   81-169   alpha-D-mannose-specific plant lectins  
Tc06_g008290   3.66e-19   22-149   alpha-D-mannose-specific plant lectins  
Tc06_g008620   1.27e-20   127-234   alpha-D-mannose-specific plant lectins  
  0.0558   234-293   alpha-D-mannose-specific plant lectins  
Tc06_g013940   0.000000038   62-133   alpha-D-mannose-specific plant lectins  
Tc06_g014350   1.7e-27   74-168   alpha-D-mannose-specific plant lectins  
  0.0681   258-287   alpha-D-mannose-specific plant lectins  
Tc06_g017250   3.27e-26   81-159,191-222   alpha-D-mannose-specific plant lectins  
Tc06_g017260   2.62e-28   79-186   alpha-D-mannose-specific plant lectins  
Tc06_g017270   3.93e-26   75-181   alpha-D-mannose-specific plant lectins  
Tc06_g017280   0.000000000000017   44-165   alpha-D-mannose-specific plant lectins  
Tc06_g017290   2.75e-28   78-184   alpha-D-mannose-specific plant lectins  
  3.4e-26   949-1055   alpha-D-mannose-specific plant lectins  
Tc06_g017300   1.14e-28   79-185   alpha-D-mannose-specific plant lectins  
Tc06_g017320   7.85e-25   78-186   alpha-D-mannose-specific plant lectins  
Tc06_g017330   6.02e-26   76-180   alpha-D-mannose-specific plant lectins  
Tc06_g017340   2.88e-26   75-179   alpha-D-mannose-specific plant lectins  
Tc06_g017360   1.44e-26   72-178   alpha-D-mannose-specific plant lectins  
Tc06_g017370   1.96e-26   73-152,184-215   alpha-D-mannose-specific plant lectins  
Tc06_g017380   3.8e-27   158-269   alpha-D-mannose-specific plant lectins  
Tc06_g017390   3.93e-29   73-182   alpha-D-mannose-specific plant lectins  
Tc06_g017400   1.7e-30   72-181   alpha-D-mannose-specific plant lectins  
Tc07_g003310   9.81e-18   67-156,250-265   alpha-D-mannose-specific plant lectins  
Tc07_g003320   5.37e-20   67-156   alpha-D-mannose-specific plant lectins  
Tc07_g003340   4.19e-18   67-156   alpha-D-mannose-specific plant lectins  
Tc07_g005400   7.85e-29   74-184   alpha-D-mannose-specific plant lectins  
Tc07_g005440   7.59e-29   68-144,176-207   alpha-D-mannose-specific plant lectins  
Tc07_g005450   4.32e-17   66-154   alpha-D-mannose-specific plant lectins  
Tc07_g005460   4.97e-27   67-173   alpha-D-mannose-specific plant lectins  
Tc07_g005480   1.44e-26   72-181   alpha-D-mannose-specific plant lectins  
Tc07_g005490   1.26e-27   54-149,181-211   alpha-D-mannose-specific plant lectins  
Tc07_g005510   3.27e-26   73-183   alpha-D-mannose-specific plant lectins  
Tc07_g005520   8.77e-28   269-379   alpha-D-mannose-specific plant lectins  
Tc07_g005530   0.00000000000000157   61-139   alpha-D-mannose-specific plant lectins  
Tc07_g005550   1.18e-27   74-184   alpha-D-mannose-specific plant lectins  
Tc07_g005580   4.84e-28   78-187   alpha-D-mannose-specific plant lectins  
Tc07_g005590   8.11e-28   73-183   alpha-D-mannose-specific plant lectins  
Tc07_g005610   2.62e-27   74-184   alpha-D-mannose-specific plant lectins  
Tc07_g005620   5.1e-27   91-200   alpha-D-mannose-specific plant lectins  
Tc07_g005630   2.62e-26   87-196   alpha-D-mannose-specific plant lectins  
Tc07_g005640   4.45e-27   252-361   alpha-D-mannose-specific plant lectins  
Tc07_g005670   1.57e-26   83-192   alpha-D-mannose-specific plant lectins  
Tc07_g005680   9.42e-26   72-181   alpha-D-mannose-specific plant lectins  
Tc07_g005690   2.62e-27   72-181   alpha-D-mannose-specific plant lectins  
Tc07_g005710   3.14e-27   71-172   alpha-D-mannose-specific plant lectins  
Tc07_g005730   0.0000000000262   65-147   alpha-D-mannose-specific plant lectins  
Tc07_g005770   2.62e-28   73-182   alpha-D-mannose-specific plant lectins  
Tc07_g006340   6.54e-26   98-207   alpha-D-mannose-specific plant lectins  
Tc07_g006350   2.22e-25   57-152,184-214   alpha-D-mannose-specific plant lectins  
Tc07_g006360   1.09e-20   72-181   alpha-D-mannose-specific plant lectins  
Tc07_g006370   2.36e-24   72-181   alpha-D-mannose-specific plant lectins  
Tc07_g006390   1.18e-25   57-152,184-214   alpha-D-mannose-specific plant lectins  
Tc07_g006400   1.44e-25   70-179   alpha-D-mannose-specific plant lectins  
Tc07_g007430   2.09e-20   76-180   alpha-D-mannose-specific plant lectins  
Tc07_g007440   3.66e-21   306-413   alpha-D-mannose-specific plant lectins  
  6.81e-20   55-130   alpha-D-mannose-specific plant lectins  
Tc07_g007450   3.01e-22   638-745   alpha-D-mannose-specific plant lectins  
Tc07_g007460   3.14e-23   65-154,186-215   alpha-D-mannose-specific plant lectins  
Tc07_g007500   3.14e-22   63-156,184-215   alpha-D-mannose-specific plant lectins  
Tc07_g007510   1.83e-30   73-183   alpha-D-mannose-specific plant lectins  
Tc07_g007520   4.97e-26   81-183   alpha-D-mannose-specific plant lectins  
Tc07_g009110   1.44e-27   73-184   alpha-D-mannose-specific plant lectins  
Tc07_g009120   2.88e-29   404-515   alpha-D-mannose-specific plant lectins  
Tc07_g009490   2.36e-29   93-171,199-219   alpha-D-mannose-specific plant lectins  
Tc07_g009500   1.57e-29   64-158,186-202   alpha-D-mannose-specific plant lectins  
Tc07_g010380   6.28e-19   104-228   alpha-D-mannose-specific plant lectins  
Tc07_g014570   2.36e-19   62-137,169-199   alpha-D-mannose-specific plant lectins  
Tc07_g014600   8.38e-27   75-184   alpha-D-mannose-specific plant lectins  
Tc07_g014610   4.71e-25   75-183   alpha-D-mannose-specific plant lectins  
Tc07_g016680   4.58e-16   71-174   alpha-D-mannose-specific plant lectins  
Tc08_g008090   2.36e-21   79-222   alpha-D-mannose-specific plant lectins  
Tc08_g008110   3.27e-25   77-208   alpha-D-mannose-specific plant lectins  
  0.0209   212-271   alpha-D-mannose-specific plant lectins  
Tc08_g010280   6.02e-16   250-334,361-383   alpha-D-mannose-specific plant lectins  
Tc09_g002220   2.62e-22   83-208   alpha-D-mannose-specific plant lectins  
Tc09_g009880   2.88e-20   78-185   alpha-D-mannose-specific plant lectins  
Tc09_g010910   0.00000000000236   567-651   alpha-D-mannose-specific plant lectins  
Tc09_g021640   5.89e-22   106-230   alpha-D-mannose-specific plant lectins  
  0.0000000461   198-300   alpha-D-mannose-specific plant lectins  
Tc10_g000290   0.0000000000000038   479-583   alpha-D-mannose-specific plant lectins  
Tc10_g008620   2.88e-23   78-211   alpha-D-mannose-specific plant lectins  
  0.00445   237-285   alpha-D-mannose-specific plant lectins  
 
Weak hits:
Tc00_g017940   0.00224   66-112   alpha-D-mannose-specific plant lectins  
Tc07_g005560   0.00381   13-51   alpha-D-mannose-specific plant lectins  
  0.0698   14-23,55-86   alpha-D-mannose-specific plant lectins  
Tc09_g014880   0.000106   67-111   alpha-D-mannose-specific plant lectins  

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Select to display   Genome       Domains   Proteins
No Yes ALL   47837 47837
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Adineta vaga   2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 12 12
No Yes Daphnia pulex Common water flea 2 2
No Yes Mnemiopsis leidyi Sea walnut 10 8
No Yes Hydra vulgaris   4 3
No Yes Sphaeroforma arctica JP610   8 7
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   5 3
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   7 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   3 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   2 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Aspergillus zonatus v1.0   2 2
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Dictyostelium discoideum   5 5
No Yes Dictyostelium purpureum   10 4
No Yes Selaginella moellendorffii   230 225
No Yes Pinus taeda Loblolly pine 62 51
No Yes Picea abies Norway spruce 69 56
No Yes Eucalyptus grandis v201 Rose gum 370 345
No Yes Theobroma cacao B97-61/B2 v1 Cacao 142 127
No Yes Gossypium raimondii v221   155 141
No Yes Citrus clementina v165   155 147
No Yes Citrus sinensis v154 Sweet orange 173 160
No Yes Thellungiella halophila v173   51 48
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 82 73
No Yes Capsella rubella v183   46 44
No Yes Arabidopsis lyrata Lyrate rockcress 66 64
No Yes Arabidopsis thaliana 10 Thale cress 55 52
No Yes Carica papaya Papaya 44 40
No Yes Medicago truncatula Barrel medic 236 231
No Yes Phaseolus vulgaris v186 French bean 110 107
No Yes Glycine max v109 Soybean 164 155
No Yes Cucumis sativus v122 Cucumber 56 54
No Yes Fragaria vesca Wild strawberry 130 112
No Yes Malus domestica v196 Apple 326 293
No Yes Prunus persica v139 Peach 109 103
No Yes Linum usitatissimum v200 Flax 125 115
No Yes Manihot esculenta v147 Cassava 130 118
No Yes Populus trichocarpa v156 Black cottonwood 290 261
No Yes Vitis vinifera Wine grape 83 70
No Yes Mimulus guttatus v140 Spotted monkey flower 62 55
No Yes Solanum lycopersicum v.2.3 Tomato 102 94
No Yes Solanum tuberosum Potato 149 135
No Yes Actinidia chinensis Hongyang   84 70
No Yes Aquilegia coerulea v195   101 98
No Yes Triticum urartu 22   141 133
No Yes Triticum aestivum 22 Bread wheat 265 263
No Yes Aegilops tauschii 22   157 153
No Yes Brachypodium distachyon Stiff brome 93 93
No Yes Oryza barthii 22 African wild rice 183 132
No Yes Oryza meridionalis 22   141 126
No Yes Oryza glumaepatula 22   178 145
No Yes Oryza glaberrima African rice 109 106
No Yes Oryza punctata 22   153 122
No Yes Oryza nivara 22   188 150
No Yes Oryza brachyantha 22 Malo sina 91 87
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 155 147
No Yes Oryza sativa v193 Rice 154 146
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 87 83
No Yes Panicum virgatum v202 Switchgrass 133 128
No Yes Setaria italica v164 Foxtail millet 90 85
No Yes Zea mays subsp. mays Maize 75 74
No Yes Zea mays v181 Maize 81 80
No Yes Sorghum bicolor Sorghum 101 97
No Yes Musa balbisiana Balbis banana 89 74
No Yes Musa acuminata 22 Wild Malaysian banana 69 62
No Yes Amborella trichopoda 22   71 55
No Yes Physcomitrella patens   11 9
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Ectocarpus siliculosus   3 3
No Yes Fragilariopsis cylindrus   10 8
No Yes Paramecium tetraurelia   2 2
No Yes Tetrahymena thermophila SB210 1   10 4
No Yes Symbiodinium minutum clade B1 v1.2   5 2
No Yes Naegleria gruberi   11 9
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   5 4
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Catenulispora acidiphila DSM 44928   4 4
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   3 3
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinoplanes sp. N902-109   5 5
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Cellulomonas flavigena DSM 20109   5 2
No Yes Cellulomonas fimi ATCC 484   5 2
No Yes [Cellvibrio] gilvus ATCC 13127   4 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   2 1
No Yes Ruminococcus albus 7   2 2
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus mucilaginosus 3016   6 5
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   2 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Cupriavidus metallidurans CH34   2 1
No Yes Burkholderia thailandensis E264   2 1
No Yes Burkholderia pseudomallei 1106a   2 1
No Yes Burkholderia ambifaria AMMD   2 1
No Yes Burkholderia cenocepacia HI2424   5 2
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas protegens Pf-5   4 2
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 139 105
No Yes Hordeum vulgare 22 Domesticated barley 252 239
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 167 156
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Actinoplanes friuliensis DSM 7358   4 3
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Ruminococcus champanellensis 18P13   3 1
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Singulisphaera acidiphila DSM 18658   2 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. KJ006   2 1
No Yes Burkholderia thailandensis MSMB121   2 1
No Yes Burkholderia pseudomallei MSHR305   2 1
No Yes Burkholderia pseudomallei NCTC 13179   2 1
No Yes Burkholderia pseudomallei BPC006   2 1
No Yes Burkholderia pseudomallei 1026b   2 1
No Yes Burkholderia pseudomallei 668   2 1
No Yes Burkholderia pseudomallei 1710b   2 1
No Yes Burkholderia pseudomallei K96243   2 1
No Yes Burkholderia ambifaria MC40-6   2 1
No Yes Burkholderia cenocepacia MC0-3   5 2
No Yes Burkholderia cenocepacia AU 1054   5 2
No Yes Burkholderia cepacia GG4   2 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 1
No Yes Xanthomonas axonopodis Xac29-1   2 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas protegens CHA0   2 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Lotus japonicus (Early assembly)   58 56
No Yes Malus x domestica (Duplicate) Apple 326 293
No Yes Ricinus communis (Early assembly) Castor bean 95 81
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   117 100
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 101 93
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 102 94
No Yes Phoenix dactylifera (Early draft) Date palm 21 20
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Arabidopsis thaliana 10 Thale cress 50 47
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   6 6
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   16960 14433
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   5 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   8 7
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   4 3
No Yes STRING v9.0.5 (STRING)   1137 1051
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 2
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   16394 14728
No Yes Global Ocean Sampling Expedition (GOS)   50 44
No Yes NCBI plasmid sequences (Plasmids)   9 7
No Yes NCBI viral sequences (Viral)   5 5
No Yes PDB chains (SCOP 1.75) (PDB)   13 12
No Yes Protein Data Bank (all PDB sequenc)   142 120
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   308 302
No Yes TargetDB (Targets)   2 1
No Yes UniProt viral sequences (Viral)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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