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  Home > Genomes > Nicotiana benthamiana 0.4.4 > alpha-D-mannose-specific plant lectins domains


alpha-D-mannose-specific plant lectins superfamily domain assignments
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Nicotiana benthamiana 0.4.4

Assignment details

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Nicotiana benthamiana 0.4.4 (Early draft) has 117 significant domains in 100 proteins.

     

Sequence ID   Evalue   Region   Family  
NbS00000418g0121.1   1.3e-27   52-157   alpha-D-mannose-specific plant lectins  
NbS00000453g0008.1   1.44e-25   96-207   alpha-D-mannose-specific plant lectins  
NbS00000482g0006.1   1.31e-26   62-158,190-218   alpha-D-mannose-specific plant lectins  
  6.41e-26   889-998   alpha-D-mannose-specific plant lectins  
NbS00000774g0010.1   3.8e-26   874-951,1028-1043   alpha-D-mannose-specific plant lectins  
  4.58e-26   143-273   alpha-D-mannose-specific plant lectins  
NbS00000774g0011.1   2.75e-17   870-935   alpha-D-mannose-specific plant lectins  
  0.00000000000000602   89-215   alpha-D-mannose-specific plant lectins  
NbS00001207g0002.1   9.55e-18   81-209   alpha-D-mannose-specific plant lectins  
NbS00001575g0001.1   9.16e-21   86-205   alpha-D-mannose-specific plant lectins  
NbS00001793g0010.1   1.96e-24   78-190   alpha-D-mannose-specific plant lectins  
NbS00001793g0011.1   1.18e-25   75-185   alpha-D-mannose-specific plant lectins  
NbS00002207g0014.1   7.07e-18   81-171   alpha-D-mannose-specific plant lectins  
  0.0000000000196   749-865   alpha-D-mannose-specific plant lectins  
NbS00002424g0002.1   2.36e-24   64-151,183-213   alpha-D-mannose-specific plant lectins  
NbS00002424g0008.1   8.24e-26   77-186   alpha-D-mannose-specific plant lectins  
NbS00002660g0010.1   1.96e-21   78-164   alpha-D-mannose-specific plant lectins  
NbS00002876g0008.1   1.7e-25   4-128   alpha-D-mannose-specific plant lectins  
NbS00002876g0009.1   5.23e-27   113-189,224-250   alpha-D-mannose-specific plant lectins  
  2.22e-25   864-941   alpha-D-mannose-specific plant lectins  
NbS00004201g0001.1   2.62e-25   102-179,206-230   alpha-D-mannose-specific plant lectins  
NbS00005173g0006.1   1.09e-22   73-183   alpha-D-mannose-specific plant lectins  
NbS00005877g0003.1   8.11e-26   203-312   alpha-D-mannose-specific plant lectins  
NbS00006216g0013.1   0.00000504   7-49   alpha-D-mannose-specific plant lectins  
  0.0000631   9-20,79-109   alpha-D-mannose-specific plant lectins  
NbS00006986g0002.1   3.27e-27   71-151,183-213   alpha-D-mannose-specific plant lectins  
NbS00006986g0014.1   1.31e-29   63-150,182-213   alpha-D-mannose-specific plant lectins  
NbS00007065g0004.1   1.14e-24   74-183   alpha-D-mannose-specific plant lectins  
NbS00007694g0001.1   1.57e-28   44-159   alpha-D-mannose-specific plant lectins  
NbS00007871g0002.1   1.44e-19   72-189   alpha-D-mannose-specific plant lectins  
  0.00000566   151-253   alpha-D-mannose-specific plant lectins  
NbS00007898g0001.1   0.0000000000000314   74-153   alpha-D-mannose-specific plant lectins  
NbS00008795g0004.1   7.98e-23   31-166   alpha-D-mannose-specific plant lectins  
NbS00008988g0011.1   0.000000000000366   42-133   alpha-D-mannose-specific plant lectins  
NbS00009350g0001.1   0.00000101   22-54   alpha-D-mannose-specific plant lectins  
NbS00009549g0002.1   2.75e-27   62-156,188-218   alpha-D-mannose-specific plant lectins  
NbS00009566g0006.1   8.9e-26   110-206   alpha-D-mannose-specific plant lectins  
NbS00009813g0108.1   1.31e-16   82-208   alpha-D-mannose-specific plant lectins  
NbS00009877g0004.1   0.00000000000196   65-132   alpha-D-mannose-specific plant lectins  
NbS00010733g0003.1   2.36e-22   35-138   alpha-D-mannose-specific plant lectins  
NbS00010841g0004.1   1.28e-25   77-185   alpha-D-mannose-specific plant lectins  
NbS00010983g0101.1   2.75e-18   74-189   alpha-D-mannose-specific plant lectins  
  0.0000442   151-253   alpha-D-mannose-specific plant lectins  
NbS00011263g0008.1   6.67e-22   77-185   alpha-D-mannose-specific plant lectins  
NbS00011507g0001.1   2.36e-29   71-165,263-278   alpha-D-mannose-specific plant lectins  
NbS00011507g0002.1   6.94e-30   71-165,263-283   alpha-D-mannose-specific plant lectins  
NbS00011924g0005.1   9.29e-17   82-208   alpha-D-mannose-specific plant lectins  
NbS00012042g0001.1   0.0000000000000301   66-194   alpha-D-mannose-specific plant lectins  
NbS00012311g0019.1   1.07e-21   80-165   alpha-D-mannose-specific plant lectins  
NbS00012738g0005.1   0.0000000000144   1-49   alpha-D-mannose-specific plant lectins  
NbS00012902g0012.1   0.00000000000000327   812-937   alpha-D-mannose-specific plant lectins  
  0.0000000000838   10-82   alpha-D-mannose-specific plant lectins  
NbS00012905g0012.1   2.09e-23   71-182   alpha-D-mannose-specific plant lectins  
NbS00012905g0013.1   3.66e-20   58-179   alpha-D-mannose-specific plant lectins  
NbS00014745g0001.1   1.02e-20   68-202   alpha-D-mannose-specific plant lectins  
  0.00000183   171-272   alpha-D-mannose-specific plant lectins  
NbS00015071g0013.1   3.27e-16   76-199   alpha-D-mannose-specific plant lectins  
NbS00015156g0004.1   0.000000222   88-164   alpha-D-mannose-specific plant lectins  
  0.0000576   188-245   alpha-D-mannose-specific plant lectins  
  0.00222   282-340   alpha-D-mannose-specific plant lectins  
NbS00015228g0002.1   0.0000000000222   88-188   alpha-D-mannose-specific plant lectins  
  0.0275   227-285   alpha-D-mannose-specific plant lectins  
NbS00015504g0202.1   0.00000000275   25-91   alpha-D-mannose-specific plant lectins  
NbS00016529g0002.1   1.2e-20   12-150   alpha-D-mannose-specific plant lectins  
NbS00016727g0016.1   2.09e-28   69-174   alpha-D-mannose-specific plant lectins  
NbS00016909g0018.1   2.22e-27   76-161   alpha-D-mannose-specific plant lectins  
NbS00016949g0006.1   1.31e-24   77-172   alpha-D-mannose-specific plant lectins  
NbS00018482g0006.1   2.88e-24   105-185   alpha-D-mannose-specific plant lectins  
NbS00018603g0010.1   3.4e-19   400-487,519-549   alpha-D-mannose-specific plant lectins  
NbS00019884g0016.1   1.7e-24   75-165   alpha-D-mannose-specific plant lectins  
  0.0176   156-239   alpha-D-mannose-specific plant lectins  
NbS00020157g0001.1   1.83e-20   85-205   alpha-D-mannose-specific plant lectins  
  0.00245   175-271   alpha-D-mannose-specific plant lectins  
NbS00022029g0010.1   1.2e-25   99-188,248-278   alpha-D-mannose-specific plant lectins  
  0.000101   210-245   alpha-D-mannose-specific plant lectins  
NbS00024295g0007.1   6.28e-20   72-199   alpha-D-mannose-specific plant lectins  
  0.000000000000537   848-978   alpha-D-mannose-specific plant lectins  
  0.000000123   945-1037   alpha-D-mannose-specific plant lectins  
NbS00025607g0013.1   3.4e-25   107-215   alpha-D-mannose-specific plant lectins  
NbS00025811g0001.1   8.51e-18   136-203   alpha-D-mannose-specific plant lectins  
  0.00000000000000144   69-134   alpha-D-mannose-specific plant lectins  
NbS00025923g0005.1   1.57e-26   75-179   alpha-D-mannose-specific plant lectins  
NbS00026614g0001.1   2.33e-19   3-122   alpha-D-mannose-specific plant lectins  
NbS00027684g0006.1   0.00000000017   215-277   alpha-D-mannose-specific plant lectins  
NbS00027905g0010.1   1.83e-24   107-215   alpha-D-mannose-specific plant lectins  
NbS00029765g0014.1   1.44e-23   86-166,198-228   alpha-D-mannose-specific plant lectins  
NbS00030233g0002.1   0.00000017   66-116   alpha-D-mannose-specific plant lectins  
NbS00030850g0003.1   1.7e-16   78-186   alpha-D-mannose-specific plant lectins  
NbS00030850g0013.1   1.7e-19   99-189   alpha-D-mannose-specific plant lectins  
NbS00030953g0013.1   2.75e-20   42-152   alpha-D-mannose-specific plant lectins  
  6.02e-19   693-803   alpha-D-mannose-specific plant lectins  
NbS00031160g0001.1   1.16e-17   59-118   alpha-D-mannose-specific plant lectins  
NbS00032198g0015.1   2.09e-28   65-209   alpha-D-mannose-specific plant lectins  
NbS00032216g0009.1   3.53e-27   65-175   alpha-D-mannose-specific plant lectins  
  2.49e-26   717-827   alpha-D-mannose-specific plant lectins  
NbS00032814g0011.1   3.27e-23   73-183   alpha-D-mannose-specific plant lectins  
NbS00032814g0012.1   4.19e-31   59-201   alpha-D-mannose-specific plant lectins  
NbS00032889g0005.1   0.000000000000109   27-135   alpha-D-mannose-specific plant lectins  
NbS00033933g0001.1   0.0000000000262   71-159,228-247   alpha-D-mannose-specific plant lectins  
  0.000656   192-264,353-370   alpha-D-mannose-specific plant lectins  
NbS00034594g0010.1   3.93e-27   77-188   alpha-D-mannose-specific plant lectins  
NbS00035608g0007.1   1.07e-19   85-191   alpha-D-mannose-specific plant lectins  
NbS00036050g0011.1   2.88e-24   72-183   alpha-D-mannose-specific plant lectins  
NbS00036050g0015.1   1.7e-18   58-186   alpha-D-mannose-specific plant lectins  
NbS00036758g0008.1   3.4e-28   84-197   alpha-D-mannose-specific plant lectins  
NbS00038466g0006.1   2.88e-23   85-196   alpha-D-mannose-specific plant lectins  
NbS00043518g0001.1   0.00000000484   117-160   alpha-D-mannose-specific plant lectins  
NbS00046208g0003.1   0.00000000000301   62-134   alpha-D-mannose-specific plant lectins  
NbS00046907g0004.1   0.000000000236   5-69   alpha-D-mannose-specific plant lectins  
NbS00047233g0004.1   3.8e-25   60-204   alpha-D-mannose-specific plant lectins  
  0.000000849   166-274   alpha-D-mannose-specific plant lectins  
NbS00047436g0006.1   2.88e-19   81-196   alpha-D-mannose-specific plant lectins  
NbS00048013g0001.1   3.4e-23   31-166   alpha-D-mannose-specific plant lectins  
NbS00048068g0001.1   9.95e-18   6-82   alpha-D-mannose-specific plant lectins  
NbS00048685g0001.1   1.96e-27   8-83,110-133   alpha-D-mannose-specific plant lectins  
NbS00048796g0002.1   3.14e-26   117-241   alpha-D-mannose-specific plant lectins  
NbS00049539g0002.1   1.26e-23   60-155,208-238   alpha-D-mannose-specific plant lectins  
NbS00052665g0009.1   0.000000000000406   13-82   alpha-D-mannose-specific plant lectins  
NbS00055549g0006.1   2.09e-24   31-109,141-172   alpha-D-mannose-specific plant lectins  
NbS00055687g0009.1   3.93e-23   517-626   alpha-D-mannose-specific plant lectins  
NbS00056580g0001.1   1.18e-26   83-193   alpha-D-mannose-specific plant lectins  
NbS00057692g0005.1   5.64e-20   93-218   alpha-D-mannose-specific plant lectins  
NbS00061054g0004.1   9.42e-26   74-185   alpha-D-mannose-specific plant lectins  
 
Weak hits:
NbS00008811g0004.1   0.000236   38-71   alpha-D-mannose-specific plant lectins  
NbS00009642g0019.1   0.000911   11-107   alpha-D-mannose-specific plant lectins  
NbS00016909g0009.1   0.0278   68-101   alpha-D-mannose-specific plant lectins  
NbS00017129g0016.1   0.0054   172-223   alpha-D-mannose-specific plant lectins  
NbS00021081g0014.1   0.0316   228-278   alpha-D-mannose-specific plant lectins  
NbS00025934g0008.1   0.00183   14-68,157-175   alpha-D-mannose-specific plant lectins  

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Select to display   Genome       Domains   Proteins
No Yes ALL   47837 47837
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Adineta vaga   2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 12 12
No Yes Daphnia pulex Common water flea 2 2
No Yes Mnemiopsis leidyi Sea walnut 10 8
No Yes Hydra vulgaris   4 3
No Yes Sphaeroforma arctica JP610   8 7
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   5 3
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   7 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   3 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   2 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Aspergillus zonatus v1.0   2 2
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Dictyostelium discoideum   5 5
No Yes Dictyostelium purpureum   10 4
No Yes Selaginella moellendorffii   230 225
No Yes Pinus taeda Loblolly pine 62 51
No Yes Picea abies Norway spruce 69 56
No Yes Eucalyptus grandis v201 Rose gum 370 345
No Yes Theobroma cacao B97-61/B2 v1 Cacao 142 127
No Yes Gossypium raimondii v221   155 141
No Yes Citrus clementina v165   155 147
No Yes Citrus sinensis v154 Sweet orange 173 160
No Yes Thellungiella halophila v173   51 48
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 82 73
No Yes Capsella rubella v183   46 44
No Yes Arabidopsis lyrata Lyrate rockcress 66 64
No Yes Arabidopsis thaliana 10 Thale cress 55 52
No Yes Carica papaya Papaya 44 40
No Yes Medicago truncatula Barrel medic 236 231
No Yes Phaseolus vulgaris v186 French bean 110 107
No Yes Glycine max v109 Soybean 164 155
No Yes Cucumis sativus v122 Cucumber 56 54
No Yes Fragaria vesca Wild strawberry 130 112
No Yes Malus domestica v196 Apple 326 293
No Yes Prunus persica v139 Peach 109 103
No Yes Linum usitatissimum v200 Flax 125 115
No Yes Manihot esculenta v147 Cassava 130 118
No Yes Populus trichocarpa v156 Black cottonwood 290 261
No Yes Vitis vinifera Wine grape 83 70
No Yes Mimulus guttatus v140 Spotted monkey flower 62 55
No Yes Solanum lycopersicum v.2.3 Tomato 102 94
No Yes Solanum tuberosum Potato 149 135
No Yes Actinidia chinensis Hongyang   84 70
No Yes Aquilegia coerulea v195   101 98
No Yes Triticum urartu 22   141 133
No Yes Triticum aestivum 22 Bread wheat 265 263
No Yes Aegilops tauschii 22   157 153
No Yes Brachypodium distachyon Stiff brome 93 93
No Yes Oryza barthii 22 African wild rice 183 132
No Yes Oryza meridionalis 22   141 126
No Yes Oryza glumaepatula 22   178 145
No Yes Oryza glaberrima African rice 109 106
No Yes Oryza punctata 22   153 122
No Yes Oryza nivara 22   188 150
No Yes Oryza brachyantha 22 Malo sina 91 87
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 155 147
No Yes Oryza sativa v193 Rice 154 146
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 87 83
No Yes Panicum virgatum v202 Switchgrass 133 128
No Yes Setaria italica v164 Foxtail millet 90 85
No Yes Zea mays subsp. mays Maize 75 74
No Yes Zea mays v181 Maize 81 80
No Yes Sorghum bicolor Sorghum 101 97
No Yes Musa balbisiana Balbis banana 89 74
No Yes Musa acuminata 22 Wild Malaysian banana 69 62
No Yes Amborella trichopoda 22   71 55
No Yes Physcomitrella patens   11 9
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Ectocarpus siliculosus   3 3
No Yes Fragilariopsis cylindrus   10 8
No Yes Paramecium tetraurelia   2 2
No Yes Tetrahymena thermophila SB210 1   10 4
No Yes Symbiodinium minutum clade B1 v1.2   5 2
No Yes Naegleria gruberi   11 9
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   5 4
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Catenulispora acidiphila DSM 44928   4 4
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   3 3
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinoplanes sp. N902-109   5 5
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Cellulomonas flavigena DSM 20109   5 2
No Yes Cellulomonas fimi ATCC 484   5 2
No Yes [Cellvibrio] gilvus ATCC 13127   4 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   2 1
No Yes Ruminococcus albus 7   2 2
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus mucilaginosus 3016   6 5
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   2 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Cupriavidus metallidurans CH34   2 1
No Yes Burkholderia thailandensis E264   2 1
No Yes Burkholderia pseudomallei 1106a   2 1
No Yes Burkholderia ambifaria AMMD   2 1
No Yes Burkholderia cenocepacia HI2424   5 2
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas protegens Pf-5   4 2
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 139 105
No Yes Hordeum vulgare 22 Domesticated barley 252 239
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 167 156
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Actinoplanes friuliensis DSM 7358   4 3
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Ruminococcus champanellensis 18P13   3 1
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Singulisphaera acidiphila DSM 18658   2 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. KJ006   2 1
No Yes Burkholderia thailandensis MSMB121   2 1
No Yes Burkholderia pseudomallei MSHR305   2 1
No Yes Burkholderia pseudomallei NCTC 13179   2 1
No Yes Burkholderia pseudomallei BPC006   2 1
No Yes Burkholderia pseudomallei 1026b   2 1
No Yes Burkholderia pseudomallei 668   2 1
No Yes Burkholderia pseudomallei 1710b   2 1
No Yes Burkholderia pseudomallei K96243   2 1
No Yes Burkholderia ambifaria MC40-6   2 1
No Yes Burkholderia cenocepacia MC0-3   5 2
No Yes Burkholderia cenocepacia AU 1054   5 2
No Yes Burkholderia cepacia GG4   2 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 1
No Yes Xanthomonas axonopodis Xac29-1   2 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas protegens CHA0   2 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Lotus japonicus (Early assembly)   58 56
No Yes Malus x domestica (Duplicate) Apple 326 293
No Yes Ricinus communis (Early assembly) Castor bean 95 81
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   117 100
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 101 93
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 102 94
No Yes Phoenix dactylifera (Early draft) Date palm 21 20
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Arabidopsis thaliana 10 Thale cress 50 47
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   6 6
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   16960 14433
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   5 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   8 7
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   4 3
No Yes STRING v9.0.5 (STRING)   1137 1051
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 2
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   16394 14728
No Yes Global Ocean Sampling Expedition (GOS)   50 44
No Yes NCBI plasmid sequences (Plasmids)   9 7
No Yes NCBI viral sequences (Viral)   5 5
No Yes PDB chains (SCOP 1.75) (PDB)   13 12
No Yes Protein Data Bank (all PDB sequenc)   142 120
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   308 302
No Yes TargetDB (Targets)   2 1
No Yes UniProt viral sequences (Viral)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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