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alpha-D-mannose-specific plant lectins superfamily domain assignments
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Theobroma cacao Matina 1-6 v0.9

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Theobroma cacao Matina 1-6 v0.9 has 139 significant domains in 105 proteins.

     

Sequence ID   Evalue   Region   Family  
CGD0001977   2.22e-24   96-221   alpha-D-mannose-specific plant lectins  
CGD0001981   8.38e-19   92-163   alpha-D-mannose-specific plant lectins  
CGD0002009   1.83e-19   65-194   alpha-D-mannose-specific plant lectins  
CGD0002220   9.68e-21   844-978   alpha-D-mannose-specific plant lectins  
  2.62e-17   62-207   alpha-D-mannose-specific plant lectins  
  0.00000000252   167-262   alpha-D-mannose-specific plant lectins  
  0.000000576   940-1043   alpha-D-mannose-specific plant lectins  
CGD0002221   2.88e-24   67-203   alpha-D-mannose-specific plant lectins  
  0.00000000114   169-273   alpha-D-mannose-specific plant lectins  
CGD0002223   0.00000000000000589   67-152   alpha-D-mannose-specific plant lectins  
  0.00000000183   136-226   alpha-D-mannose-specific plant lectins  
CGD0003769   3.27e-19   72-200   alpha-D-mannose-specific plant lectins  
CGD0003794   1.15e-20   158-265   alpha-D-mannose-specific plant lectins  
CGD0004510   1.44e-23   105-249   alpha-D-mannose-specific plant lectins  
CGD0005731   2.49e-23   78-211   alpha-D-mannose-specific plant lectins  
  0.00458   237-285   alpha-D-mannose-specific plant lectins  
CGD0006926   0.00000000000000209   77-181   alpha-D-mannose-specific plant lectins  
CGD0009282   4.19e-21   84-183   alpha-D-mannose-specific plant lectins  
CGD0009283   1.57e-26   122-227   alpha-D-mannose-specific plant lectins  
CGD0009284   1.31e-20   110-216   alpha-D-mannose-specific plant lectins  
CGD0009303   1.44e-25   66-159,191-221   alpha-D-mannose-specific plant lectins  
CGD0011649   1.96e-17   1023-1145   alpha-D-mannose-specific plant lectins  
  3.27e-17   72-193   alpha-D-mannose-specific plant lectins  
  4.71e-17   1830-1919   alpha-D-mannose-specific plant lectins  
  0.000876   1904-2005   alpha-D-mannose-specific plant lectins  
  0.0133   154-256   alpha-D-mannose-specific plant lectins  
CGD0011650   1.03e-21   72-189   alpha-D-mannose-specific plant lectins  
  0.0000000264   149-254   alpha-D-mannose-specific plant lectins  
CGD0012431   0.000000000000314   66-192   alpha-D-mannose-specific plant lectins  
  0.00196   203-257,354-373   alpha-D-mannose-specific plant lectins  
CGD0015235   5.1e-22   100-226   alpha-D-mannose-specific plant lectins  
CGD0016737   5.76e-25   125-210   alpha-D-mannose-specific plant lectins  
CGD0018150   2.28e-17   88-205   alpha-D-mannose-specific plant lectins  
CGD0019472   1.44e-20   62-148,175-205   alpha-D-mannose-specific plant lectins  
CGD0019475   4.84e-18   63-136,163-193   alpha-D-mannose-specific plant lectins  
  0.0000209   153-257   alpha-D-mannose-specific plant lectins  
CGD0020707   1.57e-22   60-196   alpha-D-mannose-specific plant lectins  
  0.0122   226-289   alpha-D-mannose-specific plant lectins  
CGD0020840   0.0000000000209   92-192   alpha-D-mannose-specific plant lectins  
  0.0149   227-289   alpha-D-mannose-specific plant lectins  
CGD0021893   5.89e-29   120-262   alpha-D-mannose-specific plant lectins  
  5.76e-28   1630-1772   alpha-D-mannose-specific plant lectins  
  9.55e-27   2427-2570   alpha-D-mannose-specific plant lectins  
  2.22e-26   897-988   alpha-D-mannose-specific plant lectins  
  0.0641   305-344   alpha-D-mannose-specific plant lectins  
CGD0023481   2.22e-26   119-197,229-260   alpha-D-mannose-specific plant lectins  
CGD0023487   2.62e-19   232-310   alpha-D-mannose-specific plant lectins  
CGD0024041   2.09e-26   82-209   alpha-D-mannose-specific plant lectins  
  0.000000000196   175-275   alpha-D-mannose-specific plant lectins  
CGD0024699   9.16e-24   81-169   alpha-D-mannose-specific plant lectins  
CGD0026001   1.7e-30   72-181   alpha-D-mannose-specific plant lectins  
CGD0026002   1.18e-24   78-186   alpha-D-mannose-specific plant lectins  
CGD0026004   1.24e-28   847-956   alpha-D-mannose-specific plant lectins  
  1.16e-26   67-178   alpha-D-mannose-specific plant lectins  
  1.7e-25   1452-1549   alpha-D-mannose-specific plant lectins  
CGD0026005   1.1e-25   75-179   alpha-D-mannose-specific plant lectins  
  4.45e-20   949-1057   alpha-D-mannose-specific plant lectins  
CGD0026008   9.81e-29   78-184   alpha-D-mannose-specific plant lectins  
CGD0026011   4.45e-25   98-202   alpha-D-mannose-specific plant lectins  
CGD0026012   1.2e-26   66-172   alpha-D-mannose-specific plant lectins  
CGD0026016   1.96e-26   73-152,184-215   alpha-D-mannose-specific plant lectins  
CGD0026032   2.88e-28   79-186   alpha-D-mannose-specific plant lectins  
  1.31e-25   913-1019   alpha-D-mannose-specific plant lectins  
CGD0026039   8.51e-26   428-506,538-569   alpha-D-mannose-specific plant lectins  
CGD0026302   6.54e-28   74-168,196-211   alpha-D-mannose-specific plant lectins  
CGD0026694   1.7e-28   104-215   alpha-D-mannose-specific plant lectins  
CGD0026700   1.31e-27   73-184   alpha-D-mannose-specific plant lectins  
CGD0026707   6.28e-29   73-184   alpha-D-mannose-specific plant lectins  
CGD0026845   1.05e-27   64-158,190-219   alpha-D-mannose-specific plant lectins  
CGD0026927   1.96e-25   70-179   alpha-D-mannose-specific plant lectins  
CGD0026930   3.4e-25   57-152,184-214   alpha-D-mannose-specific plant lectins  
CGD0026933   6.54e-26   57-184   alpha-D-mannose-specific plant lectins  
CGD0026936   2.75e-24   72-181   alpha-D-mannose-specific plant lectins  
CGD0026939   0.000000352   57-104   alpha-D-mannose-specific plant lectins  
CGD0026945   2.09e-26   72-181   alpha-D-mannose-specific plant lectins  
CGD0027015   5.89e-23   769-858,890-919   alpha-D-mannose-specific plant lectins  
  5.1e-22   40-147   alpha-D-mannose-specific plant lectins  
CGD0027022   4.45e-30   73-183   alpha-D-mannose-specific plant lectins  
CGD0027024   1.7e-19   722-829   alpha-D-mannose-specific plant lectins  
  2.75e-19   77-189   alpha-D-mannose-specific plant lectins  
  0.00000000000000275   614-673   alpha-D-mannose-specific plant lectins  
CGD0027026   2.09e-21   63-156,184-215   alpha-D-mannose-specific plant lectins  
CGD0027042   4.71e-26   60-169   alpha-D-mannose-specific plant lectins  
CGD0027043   2.36e-30   875-982   alpha-D-mannose-specific plant lectins  
  1.83e-25   94-168,200-229   alpha-D-mannose-specific plant lectins  
CGD0027044   1.31e-26   635-741   alpha-D-mannose-specific plant lectins  
  0.0000000000000968   69-133   alpha-D-mannose-specific plant lectins  
  0.0000338   873-913   alpha-D-mannose-specific plant lectins  
  0.0000496   874-887,919-950   alpha-D-mannose-specific plant lectins  
  0.000157   789-835   alpha-D-mannose-specific plant lectins  
CGD0027045   4.19e-26   81-183   alpha-D-mannose-specific plant lectins  
CGD0027046   3.53e-28   72-181   alpha-D-mannose-specific plant lectins  
CGD0027048   1.83e-19   74-178   alpha-D-mannose-specific plant lectins  
CGD0027049   8.24e-26   73-170   alpha-D-mannose-specific plant lectins  
CGD0027050   1.26e-27   64-159,191-221   alpha-D-mannose-specific plant lectins  
CGD0027051   5.37e-17   111-160,192-223   alpha-D-mannose-specific plant lectins  
CGD0027052   0.000000345   263-307   alpha-D-mannose-specific plant lectins  
  0.0000146   267-278,310-341   alpha-D-mannose-specific plant lectins  
  0.00114   17-58   alpha-D-mannose-specific plant lectins  
CGD0027061   7.33e-28   659-769   alpha-D-mannose-specific plant lectins  
  0.0000000000000288   72-167   alpha-D-mannose-specific plant lectins  
CGD0027062   3.53e-29   73-182   alpha-D-mannose-specific plant lectins  
CGD0027064   2.62e-27   72-181   alpha-D-mannose-specific plant lectins  
CGD0027065   1.16e-26   71-172   alpha-D-mannose-specific plant lectins  
CGD0027067   1.11e-25   72-181   alpha-D-mannose-specific plant lectins  
CGD0027068   1.23e-26   83-192   alpha-D-mannose-specific plant lectins  
CGD0027069   2.75e-27   68-178   alpha-D-mannose-specific plant lectins  
CGD0027070   0.00000000000000109   17-94   alpha-D-mannose-specific plant lectins  
CGD0027071   4.58e-27   91-200   alpha-D-mannose-specific plant lectins  
CGD0027072   1.44e-25   71-180   alpha-D-mannose-specific plant lectins  
CGD0027074   6.81e-28   74-184   alpha-D-mannose-specific plant lectins  
CGD0027078   8.38e-29   81-190   alpha-D-mannose-specific plant lectins  
CGD0027110   8.77e-29   74-184   alpha-D-mannose-specific plant lectins  
CGD0027113   3.8e-28   73-182   alpha-D-mannose-specific plant lectins  
CGD0027310   1.01e-19   935-1024   alpha-D-mannose-specific plant lectins  
  1.44e-17   165-254   alpha-D-mannose-specific plant lectins  
  1.44e-17   1726-1815,1909-1924   alpha-D-mannose-specific plant lectins  
CGD0027815   2.75e-18   104-228   alpha-D-mannose-specific plant lectins  
CGD0027995   7.72e-30   72-166,194-210   alpha-D-mannose-specific plant lectins  
CGD0027998   2.36e-29   93-171,199-219   alpha-D-mannose-specific plant lectins  
CGD0028377   7.72e-25   71-202   alpha-D-mannose-specific plant lectins  
CGD0028638   1.7e-26   75-184   alpha-D-mannose-specific plant lectins  
CGD0028640   3.4e-27   76-184   alpha-D-mannose-specific plant lectins  
CGD0028642   4.84e-25   75-183   alpha-D-mannose-specific plant lectins  
CGD0029037   4.45e-23   169-302   alpha-D-mannose-specific plant lectins  
  0.000000144   264-361   alpha-D-mannose-specific plant lectins  
  0.000051   59-95   alpha-D-mannose-specific plant lectins  
CGD0029041   2.09e-22   73-206   alpha-D-mannose-specific plant lectins  
  0.0000000332   169-260   alpha-D-mannose-specific plant lectins  
CGD0029365   4.45e-16   212-296,323-345   alpha-D-mannose-specific plant lectins  
CGD0029576   1.7e-21   67-210   alpha-D-mannose-specific plant lectins  
CGD0029578   3.01e-25   77-208   alpha-D-mannose-specific plant lectins  
  0.0209   212-271   alpha-D-mannose-specific plant lectins  
CGD0030900   3.8e-28   77-187   alpha-D-mannose-specific plant lectins  
CGD0031776   1.7e-22   59-184   alpha-D-mannose-specific plant lectins  
CGD0032452   3.66e-20   78-184   alpha-D-mannose-specific plant lectins  
CGD0033078   9.75e-21   62-214   alpha-D-mannose-specific plant lectins  
CGD0033088   1.15e-20   61-207   alpha-D-mannose-specific plant lectins  
  0.00036   166-266   alpha-D-mannose-specific plant lectins  
CGD0033089   3.14e-25   64-210   alpha-D-mannose-specific plant lectins  
CGD0033091   2.49e-23   64-199   alpha-D-mannose-specific plant lectins  
CGD0033092   2.62e-23   62-192   alpha-D-mannose-specific plant lectins  
  0.0683   170-250   alpha-D-mannose-specific plant lectins  
CGD0033093   3.01e-21   64-152   alpha-D-mannose-specific plant lectins  
CGD0033094   0.0000000000017   23-96   alpha-D-mannose-specific plant lectins  
  0.00000183   73-167   alpha-D-mannose-specific plant lectins  
CGD0033106   3.66e-27   65-212   alpha-D-mannose-specific plant lectins  
  0.00000694   175-265   alpha-D-mannose-specific plant lectins  
CGD0033283   5.76e-28   9-118   alpha-D-mannose-specific plant lectins  
CGD0033607   9.55e-23   106-230   alpha-D-mannose-specific plant lectins  
  0.0000000259   198-300   alpha-D-mannose-specific plant lectins  
 
Weak hits:
CGD0015395   0.0384   2-37   alpha-D-mannose-specific plant lectins  
CGD0026338   0.0122   92-138   alpha-D-mannose-specific plant lectins  
CGD0029026   0.00197   57-143   alpha-D-mannose-specific plant lectins  
CGD0032351   0.0048   53-92   alpha-D-mannose-specific plant lectins  
CGD0033285   0.00312   16-58   alpha-D-mannose-specific plant lectins  

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Select to display   Genome       Domains   Proteins
No Yes ALL   47837 47837
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Adineta vaga   2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 12 12
No Yes Daphnia pulex Common water flea 2 2
No Yes Mnemiopsis leidyi Sea walnut 10 8
No Yes Hydra vulgaris   4 3
No Yes Sphaeroforma arctica JP610   8 7
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   5 3
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   7 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   3 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   2 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Aspergillus zonatus v1.0   2 2
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Dictyostelium discoideum   5 5
No Yes Dictyostelium purpureum   10 4
No Yes Selaginella moellendorffii   230 225
No Yes Pinus taeda Loblolly pine 62 51
No Yes Picea abies Norway spruce 69 56
No Yes Eucalyptus grandis v201 Rose gum 370 345
No Yes Theobroma cacao B97-61/B2 v1 Cacao 142 127
No Yes Gossypium raimondii v221   155 141
No Yes Citrus clementina v165   155 147
No Yes Citrus sinensis v154 Sweet orange 173 160
No Yes Thellungiella halophila v173   51 48
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 82 73
No Yes Capsella rubella v183   46 44
No Yes Arabidopsis lyrata Lyrate rockcress 66 64
No Yes Arabidopsis thaliana 10 Thale cress 55 52
No Yes Carica papaya Papaya 44 40
No Yes Medicago truncatula Barrel medic 236 231
No Yes Phaseolus vulgaris v186 French bean 110 107
No Yes Glycine max v109 Soybean 164 155
No Yes Cucumis sativus v122 Cucumber 56 54
No Yes Fragaria vesca Wild strawberry 130 112
No Yes Malus domestica v196 Apple 326 293
No Yes Prunus persica v139 Peach 109 103
No Yes Linum usitatissimum v200 Flax 125 115
No Yes Manihot esculenta v147 Cassava 130 118
No Yes Populus trichocarpa v156 Black cottonwood 290 261
No Yes Vitis vinifera Wine grape 83 70
No Yes Mimulus guttatus v140 Spotted monkey flower 62 55
No Yes Solanum lycopersicum v.2.3 Tomato 102 94
No Yes Solanum tuberosum Potato 149 135
No Yes Actinidia chinensis Hongyang   84 70
No Yes Aquilegia coerulea v195   101 98
No Yes Triticum urartu 22   141 133
No Yes Triticum aestivum 22 Bread wheat 265 263
No Yes Aegilops tauschii 22   157 153
No Yes Brachypodium distachyon Stiff brome 93 93
No Yes Oryza barthii 22 African wild rice 183 132
No Yes Oryza meridionalis 22   141 126
No Yes Oryza glumaepatula 22   178 145
No Yes Oryza glaberrima African rice 109 106
No Yes Oryza punctata 22   153 122
No Yes Oryza nivara 22   188 150
No Yes Oryza brachyantha 22 Malo sina 91 87
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 155 147
No Yes Oryza sativa v193 Rice 154 146
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 87 83
No Yes Panicum virgatum v202 Switchgrass 133 128
No Yes Setaria italica v164 Foxtail millet 90 85
No Yes Zea mays subsp. mays Maize 75 74
No Yes Zea mays v181 Maize 81 80
No Yes Sorghum bicolor Sorghum 101 97
No Yes Musa balbisiana Balbis banana 89 74
No Yes Musa acuminata 22 Wild Malaysian banana 69 62
No Yes Amborella trichopoda 22   71 55
No Yes Physcomitrella patens   11 9
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Ectocarpus siliculosus   3 3
No Yes Fragilariopsis cylindrus   10 8
No Yes Paramecium tetraurelia   2 2
No Yes Tetrahymena thermophila SB210 1   10 4
No Yes Symbiodinium minutum clade B1 v1.2   5 2
No Yes Naegleria gruberi   11 9
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   5 4
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Catenulispora acidiphila DSM 44928   4 4
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   3 3
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinoplanes sp. N902-109   5 5
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Cellulomonas flavigena DSM 20109   5 2
No Yes Cellulomonas fimi ATCC 484   5 2
No Yes [Cellvibrio] gilvus ATCC 13127   4 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   2 1
No Yes Ruminococcus albus 7   2 2
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus mucilaginosus 3016   6 5
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   2 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Cupriavidus metallidurans CH34   2 1
No Yes Burkholderia thailandensis E264   2 1
No Yes Burkholderia pseudomallei 1106a   2 1
No Yes Burkholderia ambifaria AMMD   2 1
No Yes Burkholderia cenocepacia HI2424   5 2
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas protegens Pf-5   4 2
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 139 105
No Yes Hordeum vulgare 22 Domesticated barley 252 239
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 167 156
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Actinoplanes friuliensis DSM 7358   4 3
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Ruminococcus champanellensis 18P13   3 1
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Singulisphaera acidiphila DSM 18658   2 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. KJ006   2 1
No Yes Burkholderia thailandensis MSMB121   2 1
No Yes Burkholderia pseudomallei MSHR305   2 1
No Yes Burkholderia pseudomallei NCTC 13179   2 1
No Yes Burkholderia pseudomallei BPC006   2 1
No Yes Burkholderia pseudomallei 1026b   2 1
No Yes Burkholderia pseudomallei 668   2 1
No Yes Burkholderia pseudomallei 1710b   2 1
No Yes Burkholderia pseudomallei K96243   2 1
No Yes Burkholderia ambifaria MC40-6   2 1
No Yes Burkholderia cenocepacia MC0-3   5 2
No Yes Burkholderia cenocepacia AU 1054   5 2
No Yes Burkholderia cepacia GG4   2 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 1
No Yes Xanthomonas axonopodis Xac29-1   2 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas protegens CHA0   2 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Lotus japonicus (Early assembly)   58 56
No Yes Malus x domestica (Duplicate) Apple 326 293
No Yes Ricinus communis (Early assembly) Castor bean 95 81
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   117 100
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 101 93
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 102 94
No Yes Phoenix dactylifera (Early draft) Date palm 21 20
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Arabidopsis thaliana 10 Thale cress 50 47
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   6 6
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   16960 14433
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   5 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   8 7
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   4 3
No Yes STRING v9.0.5 (STRING)   1137 1051
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 2
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   16394 14728
No Yes Global Ocean Sampling Expedition (GOS)   50 44
No Yes NCBI plasmid sequences (Plasmids)   9 7
No Yes NCBI viral sequences (Viral)   5 5
No Yes PDB chains (SCOP 1.75) (PDB)   13 12
No Yes Protein Data Bank (all PDB sequenc)   142 120
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   308 302
No Yes TargetDB (Targets)   2 1
No Yes UniProt viral sequences (Viral)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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