SUPERFAMILY 1.75 HMM library and genome assignments server

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TROVE domain-like superfamily domain assignments
in
STRING v9.0.5

Assignment details

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STRING v9.0.5 (STRING) has 145 significant domains in 142 proteins.

     

Sequence ID   Evalue   Region   Family  
100226.SCO1905   3.79e-56   20-354   TROVE domain-like  
10090.ENSMUSP00000006444   3.66e-65   240-385,437-588,655-676   TROVE domain-like  
10090.ENSMUSP00000018343   1.83e-134   6-362   TROVE domain-like  
10116.ENSRNOP00000004701   1.57e-133   6-362   TROVE domain-like  
10116.ENSRNOP00000012235   1.24e-65   241-390,442-593   TROVE domain-like  
10141.ENSCPOP00000000591   5.62e-134   5-362   TROVE domain-like  
10141.ENSCPOP00000000961   2.35e-57   136-266,309-459,525-548   TROVE domain-like  
10141.ENSCPOP00000018466   8.11e-29   10-38,81-203   TROVE domain-like  
10141.ENSCPOP00000018966   1.12e-54   180-318,360-510,576-599   TROVE domain-like  
101510.RHA1_ro02091   1.57e-39   28-345   TROVE domain-like  
10228.JGI52303   3.01e-56   193-329,372-522,573-596   TROVE domain-like  
114615.BRADO3712   6.02e-37   43-315   TROVE domain-like  
121224.XP_002425190   3.92e-65   4-338   TROVE domain-like  
135651.CBN24574   1.7e-95   57-461   TROVE domain-like  
13616.ENSMODP00000008927   1.31e-60   150-297,349-499,563-586   TROVE domain-like  
13616.ENSMODP00000015278   1.7e-132   5-362   TROVE domain-like  
203119.Cthe_2764   1.15e-72   12-293   TROVE domain-like  
204669.Acid345_2911   3.14e-37   17-280   TROVE domain-like  
205922.Pfl01_1945   3.53e-77   10-318   TROVE domain-like  
220664.PFL_2303   1.83e-73   10-318   TROVE domain-like  
226186.BT_1766   1.31e-72   2-304   TROVE domain-like  
227882.SAV_6350   2.09e-49   21-354   TROVE domain-like  
243090.RB11421   9.68e-78   10-342   TROVE domain-like  
243230.DR_1262   8.76e-91   14-354   TROVE domain-like  
246196.MSMEG_1193   8.5e-101   12-379   TROVE domain-like  
246200.SPO0157   1.57e-80   57-361   TROVE domain-like  
247156.nfa39620   9.15e-46   24-351   TROVE domain-like  
269798.CHU_2908   5.36e-73   13-317   TROVE domain-like  
281687.CJA06956   7.19e-95   59-454   TROVE domain-like  
28377.ENSACAP00000008113   1.44e-21   4-108   TROVE domain-like  
28377.ENSACAP00000008115   2.88e-29   62-208   TROVE domain-like  
28377.ENSACAP00000008125   1.57e-131   5-362   TROVE domain-like  
288000.BBta_3746   3.79e-37   11-268   TROVE domain-like  
290402.Cbei_3557   2.22e-66   13-293   TROVE domain-like  
3055.JGI138565   2.09e-94   5-354   TROVE domain-like  
3055.JGI409048   4.45e-37   479-627   TROVE domain-like  
  1.05e-34   24-180   TROVE domain-like  
  5.75e-19   225-283   TROVE domain-like  
3055.JGI420578   9.68e-94   6-397   TROVE domain-like  
31033.ENSTRUP00000014381   8.5e-60   1-92,147-310   TROVE domain-like  
31033.ENSTRUP00000024258   1.31e-107   10-364   TROVE domain-like  
311403.Arad_4867   1.7e-70   15-319   TROVE domain-like  
31234.CRE30682   3.53e-98   54-290,328-468   TROVE domain-like  
316274.Haur_1146   9.94e-74   36-355   TROVE domain-like  
32049.SYNPCC7002_G0140   3.4e-107   12-356   TROVE domain-like  
321314.SC3451   7.45e-70   18-319   TROVE domain-like  
329726.AM1_0330   0.000000314   22-249   TROVE domain-like  
329726.AM1_2204   5.36e-104   11-354   TROVE domain-like  
349521.HCH_01566   5.1e-62   15-319   TROVE domain-like  
395961.Cyan7425_2589   0.000000000641   7-250   TROVE domain-like  
395962.Cyan8802_3958   7.19e-109   13-356   TROVE domain-like  
39946.BGIOSIBCE025934   0.0000353   148-256   TROVE domain-like  
39947.LOC_Os07g46770.1   0.0000353   148-256   TROVE domain-like  
402626.Rpic_2337   6.8e-34   19-303   TROVE domain-like  
41431.PCC8801_3906   1.01e-108   13-356   TROVE domain-like  
426355.Mrad2831_1806   8.37e-105   13-348   TROVE domain-like  
439851.SeD_A3891   8.5e-72   18-319   TROVE domain-like  
43989.cce_1093   2.48e-104   13-357   TROVE domain-like  
44689.DDBDRAFT_0191760   4.05e-65   60-224,252-438   TROVE domain-like  
448385.sce2537   1.44e-26   121-343   TROVE domain-like  
448385.sce5600   1.57e-111   13-367   TROVE domain-like  
45351.JGI199545   4.45e-117   6-361   TROVE domain-like  
454166.SeAg_B3721   2.75e-72   18-319   TROVE domain-like  
454169.SeHA_C3828   2.88e-72   18-319   TROVE domain-like  
455632.SGR_5612   6.28e-44   26-357   TROVE domain-like  
460265.Mnod_7219   5.75e-105   14-348   TROVE domain-like  
471852.Tcur_0813   4.71e-37   21-346   TROVE domain-like  
476213.SPC_3589   1.19e-71   7-306   TROVE domain-like  
479432.Sros_7011   5.36e-78   14-377   TROVE domain-like  
479433.Caci_0322   3.01e-40   9-336   TROVE domain-like  
485917.Phep_0085   5.89e-65   9-333   TROVE domain-like  
485918.Cpin_7159   7.45e-65   10-312   TROVE domain-like  
491916.RHECIAT_PA0000346   1.19e-70   14-319   TROVE domain-like  
51511.ENSCSAVP00000014916   3.14e-33   32-216   TROVE domain-like  
51511.ENSCSAVP00000014924   1.83e-25   6-137   TROVE domain-like  
550537.SEN3346   8.5e-72   18-319   TROVE domain-like  
550538.SG3918   8.37e-70   18-319   TROVE domain-like  
5671.LinJ26.1070   9.02e-20   240-265,310-349,399-514   TROVE domain-like  
  0.0000000209   68-145   TROVE domain-like  
5691.Tb927.7.830   9.81e-27   71-206,237-384   TROVE domain-like  
5911.Q94818   9.15e-45   33-193,285-426   TROVE domain-like  
59729.ENSTGUP00000004266   2.09e-120   1-338   TROVE domain-like  
6238.CBG09566   2.75e-101   54-468   TROVE domain-like  
6239.C12D8.11.1   7.98e-99   54-289,327-467   TROVE domain-like  
632772.ROP_17620   1.44e-41   28-345   TROVE domain-like  
63737.Npun_F0915   7.06e-106   13-357   TROVE domain-like  
63737.Npun_F1209   0.00000000131   20-246   TROVE domain-like  
65393.PCC7424_4359   4.71e-106   13-357   TROVE domain-like  
69293.ENSGACP00000023510   8.24e-61   5-105,156-320   TROVE domain-like  
6945.ISCW012296-PA   3.01e-50   19-252   TROVE domain-like  
7070.XP_968421   5.1e-77   3-358   TROVE domain-like  
7159.AAEL003382-PA   3.66e-83   2-386   TROVE domain-like  
7165.AGAP001871-PA   3.01e-72   5-389   TROVE domain-like  
7176.CPIJ008929-PA   1.57e-77   2-47,80-215,244-414   TROVE domain-like  
7217.FBpp0125831   7.19e-48   98-429   TROVE domain-like  
7222.FBpp0158842   8.11e-36   87-375   TROVE domain-like  
7227.FBpp0070544   1.57e-65   73-409   TROVE domain-like  
7237.FBpp0279948   1.26e-68   116-457   TROVE domain-like  
7244.FBpp0229650   1.7e-45   4-327   TROVE domain-like  
7245.FBpp0261312   3.14e-58   82-426   TROVE domain-like  
7260.FBpp0245396   5.1e-38   8-335   TROVE domain-like  
7425.XP_001604397   9.29e-85   9-365   TROVE domain-like  
7460.XP_001119982   3.53e-75   8-293   TROVE domain-like  
7668.XP_001183959   6.02e-58   231-369,408-558,602-623   TROVE domain-like  
7668.XP_001185364   3.53e-91   5-348   TROVE domain-like  
7719.ENSCINP00000005618   1.57e-66   41-388   TROVE domain-like  
7739.JGI108871   2.35e-58   304-439,474-624,684-704   TROVE domain-like  
7739.JGI128562   5.1e-53   275-403,438-600   TROVE domain-like  
7739.JGI250194   1.06e-106   15-352   TROVE domain-like  
7739.JGI57459   5.36e-107   11-347   TROVE domain-like  
8090.ENSORLP00000003839   1.31e-56   8-112,161-309   TROVE domain-like  
8090.ENSORLP00000013735   6.28e-105   29-374   TROVE domain-like  
81824.JGI34670   1.14e-103   6-352   TROVE domain-like  
81824.JGI7351   1.96e-68   248-405,444-618   TROVE domain-like  
8364.ENSXETP00000035244   1.11e-53   5-139,187-337   TROVE domain-like  
8364.ENSXETP00000037511   1.44e-134   5-362   TROVE domain-like  
9031.ENSGALP00000003938   2.22e-119   2-341   TROVE domain-like  
9258.ENSOANP00000004698   5.89e-132   12-368   TROVE domain-like  
9258.ENSOANP00000019888   6.41e-32   13-38,94-235   TROVE domain-like  
9361.ENSDNOP00000001675   1.11e-77   20-252   TROVE domain-like  
9361.ENSDNOP00000015394   1.57e-39   51-192,242-328   TROVE domain-like  
  0.0811   365-391   TROVE domain-like  
9544.ENSMMUP00000021364   3.14e-62   232-381,431-581,646-669   TROVE domain-like  
9544.ENSMMUP00000029814   5.49e-71   5-199   TROVE domain-like  
9598.ENSPTRP00000002997   3.53e-135   5-362   TROVE domain-like  
9598.ENSPTRP00000010340   6.15e-63   233-381,431-581,646-669   TROVE domain-like  
9600.ENSPPYP00000000451   6.41e-135   5-362   TROVE domain-like  
9600.ENSPPYP00000006332   1.2e-63   233-381,431-581,646-669   TROVE domain-like  
9606.ENSP00000262715   9.15e-63   233-381,431-581,646-669   TROVE domain-like  
9606.ENSP00000356411   3.53e-135   5-362   TROVE domain-like  
9615.ENSCAFP00000008059   4.05e-56   213-352,404-554   TROVE domain-like  
9615.ENSCAFP00000015535   4.84e-135   14-371   TROVE domain-like  
9685.ENSFCAP00000006433   8.63e-62   247-385,434-584,652-674   TROVE domain-like  
9685.ENSFCAP00000009435   1.31e-134   5-362   TROVE domain-like  
9796.ENSECAP00000009299   1.03e-62   225-362,414-564,632-655   TROVE domain-like  
9796.ENSECAP00000016412   1.44e-132   6-362   TROVE domain-like  
9823.ENSSSCP00000002340   1.22e-26   28-179   TROVE domain-like  
9823.ENSSSCP00000011517   6.02e-131   5-363   TROVE domain-like  
9913.ENSBTAP00000001564   3.66e-60   242-387,438-588,656-679   TROVE domain-like  
9913.ENSBTAP00000018350   7.85e-135   14-371   TROVE domain-like  
99287.STM3521   2.88e-72   18-319   TROVE domain-like  
9986.ENSOCUP00000002000   1.83e-60   178-327,379-529,599-620   TROVE domain-like  
9986.ENSOCUP00000011029   3.66e-132   6-362   TROVE domain-like  
99883.ENSTNIP00000006849   1.44e-25   40-183   TROVE domain-like  
99883.ENSTNIP00000006850   7.32e-32   9-114   TROVE domain-like  
99883.ENSTNIP00000010622   1.22e-112   8-364   TROVE domain-like  
 
Weak hits:
10090.ENSMUSP00000054515   0.0131   12-102   TROVE domain-like  
10090.ENSMUSP00000106090   0.0144   69-216   TROVE domain-like  
10090.ENSMUSP00000109395   0.0968   292-388   TROVE domain-like  
10116.ENSRNOP00000012287   0.0144   69-216   TROVE domain-like  
10116.ENSRNOP00000020282   0.068   253-349   TROVE domain-like  
10116.ENSRNOP00000037810   0.00732   13-58   TROVE domain-like  
10116.ENSRNOP00000042748   0.0314   29-85   TROVE domain-like  
114615.BRADO1161   0.0327   216-292   TROVE domain-like  
122586.NMB1750   0.0119   90-201   TROVE domain-like  
135651.CBN19641   0.0392   466-596   TROVE domain-like  
13616.ENSMODP00000031818   0.0123   400-454   TROVE domain-like  
15368.BRADI1G12110.1   0.0458   28-107   TROVE domain-like  
15368.BRADI4G04800.1   0.0112   21-114   TROVE domain-like  
160488.PP_4885   0.0275   79-158   TROVE domain-like  
164328.JGI83458   0.00994   468-520   TROVE domain-like  
177437.HRM2_38710   0.0876   884-998   TROVE domain-like  
190485.XCC1829   0.00706   14-117   TROVE domain-like  
196162.Noca_4461   0.0196   15-101   TROVE domain-like  
199310.c1528   0.0301   38-89   TROVE domain-like  
216895.VV2_0557   0.0667   196-289   TROVE domain-like  
223283.PSPTO_0009   0.0589   294-404   TROVE domain-like  
223283.PSPTO_B0002   0.0589   294-404   TROVE domain-like  
243160.BMAA1612   0.0405   250-330   TROVE domain-like  
246197.MXAN_2625   0.00889   11-77   TROVE domain-like  
267377.MMP1192   0.000484   258-329   TROVE domain-like  
271848.BTH_II0768   0.0471   267-330   TROVE domain-like  
272560.BPSS1602   0.0275   276-355   TROVE domain-like  
28377.ENSACAP00000017030   0.0034   312-368   TROVE domain-like  
2850.JGI49738   0.0523   63-141   TROVE domain-like  
288000.BBta_6892   0.051   263-386   TROVE domain-like  
28985.Q6CY59   0.0157   313-373   TROVE domain-like  
290338.CKO_02303   0.0732   117-161   TROVE domain-like  
297246.lpp0337   0.0222   22-60   TROVE domain-like  
29760.GSVIVG00026251001   0.0549   48-154   TROVE domain-like  
29760.GSVIVG00029243001   0.085   270-351   TROVE domain-like  
3055.JGI206495   0.0523   482-547   TROVE domain-like  
31234.CRE17253   0.0759   121-193   TROVE domain-like  
31234.CRE17255   0.00641   63-183   TROVE domain-like  
31234.CRE17256   0.00123   122-201   TROVE domain-like  
314565.XC_2360   0.00706   14-117   TROVE domain-like  
316274.Haur_0283   0.00732   84-140   TROVE domain-like  
320372.BURPS1710b_A0658   0.0405   250-330   TROVE domain-like  
320373.BURPS668_A2259   0.0458   276-355   TROVE domain-like  
320389.BMA10247_A0656   0.0458   276-355   TROVE domain-like  
3218.JGI87244   0.00785   21-178   TROVE domain-like  
326427.Cagg_2054   0.0915   351-457   TROVE domain-like  
335284.Pcryo_0955   0.0222   236-321   TROVE domain-like  
357348.BURPS1106A_A2176   0.0458   276-355   TROVE domain-like  
366394.Smed_1491   0.00262   51-128   TROVE domain-like  
3694.estExt_fgenesh4_pm.C_LG_I1179   0.0915   331-413   TROVE domain-like  
3694.eugene3.02020019   0.0209   164-227   TROVE domain-like  
391008.Smal_1264   0.0353   240-328   TROVE domain-like  
391038.Bphy_4275   0.00615   16-74   TROVE domain-like  
397945.Aave_0593   0.0301   182-240   TROVE domain-like  
39946.BGIOSIBCE015477   0.00732   168-244   TROVE domain-like  
39947.LOC_Os04g38960.1   0.00471   32-107   TROVE domain-like  
399549.Msed_2101   0.0157   297-337   TROVE domain-like  
399550.Smar_1420   0.00889   19-96   TROVE domain-like  
402880.MmarC5_0398   0.00353   258-329   TROVE domain-like  
412022.BMA10229_1977   0.0458   276-355   TROVE domain-like  
412694.BALH_0272   0.0144   38-82   TROVE domain-like  
426117.M446_2534   0.0418   107-207   TROVE domain-like  
426368.MmarC7_0439   0.00123   258-329   TROVE domain-like  
445932.Emin_0827   0.0772   100-196   TROVE domain-like  
455632.SGR_5667   0.0575   238-321   TROVE domain-like  
4558.Sb02g042745.1   0.0157   91-142   TROVE domain-like  
4558.Sb06g019170.1   0.0183   36-106   TROVE domain-like  
4558.Sb06g027100.1   0.0785   153-238   TROVE domain-like  
460265.Mnod_2719   0.0196   49-147   TROVE domain-like  
479436.Vpar_0673   0.00471   41-227   TROVE domain-like  
4896.SPBC18H10.11c-1   0.0327   365-416   TROVE domain-like  
509169.xccb100_2117   0.00706   14-117   TROVE domain-like  
525904.Tter_2021   0.00955   195-260   TROVE domain-like  
546414.Deide_17550   0.0575   166-242   TROVE domain-like  
5476.CAL0006126   0.0314   533-573   TROVE domain-like  
5518.FG02766.1   0.0628   1189-1261   TROVE domain-like  
559307.ZYRO0G04796g   0.0497   104-237   TROVE domain-like  
5722.A2EMY5   0.0128   356-440   TROVE domain-like  
5833.PF08_0081-1   0.0327   391-441   TROVE domain-like  
5911.XP_001031660   0.0183   566-659   TROVE domain-like  
6035.ECU07_0190   0.0929   20-94   TROVE domain-like  
62928.azo3430   0.00641   5-93   TROVE domain-like  
65393.PCC7424_4606   0.0392   97-166   TROVE domain-like  
67593.JGI133874   0.00275   118-190   TROVE domain-like  
70448.Q01EH9   0.0379   130-192   TROVE domain-like  
7222.FBpp0147161   0.0863   39-135   TROVE domain-like  
7237.FBpp0285520   0.00353   33-82   TROVE domain-like  
7237.FBpp0285870   0.0157   521-570   TROVE domain-like  
7244.FBpp0230991   0.017   457-534   TROVE domain-like  
7460.XP_392142   0.0301   89-181   TROVE domain-like  
7668.XP_786914   0.0732   152-248   TROVE domain-like  
76869.PputGB1_1625   0.0536   251-285   TROVE domain-like  
7739.JGI244566   0.0157   92-214   TROVE domain-like  
7955.ENSDARP00000048365   0.0144   1245-1322   TROVE domain-like  
8090.ENSORLP00000001612   0.0196   133-225   TROVE domain-like  
81824.JGI33477   0.0262   380-419   TROVE domain-like  
9031.ENSGALP00000005313   0.0275   7-145   TROVE domain-like  
9258.ENSOANP00000002182   0.0196   78-143   TROVE domain-like  
9258.ENSOANP00000009269   0.0732   169-231   TROVE domain-like  
9258.ENSOANP00000020514   0.00432   64-114   TROVE domain-like  
9544.ENSMMUP00000002949   0.0131   69-124   TROVE domain-like  
9544.ENSMMUP00000012877   0.0144   69-216   TROVE domain-like  
9544.ENSMMUP00000019534   0.0667   253-343   TROVE domain-like  
9598.ENSPTRP00000012052   0.0144   69-216   TROVE domain-like  
9598.ENSPTRP00000021085   0.0209   166-245   TROVE domain-like  
9598.ENSPTRP00000048860   0.0654   253-343   TROVE domain-like  
9600.ENSPPYP00000004676   0.017   48-121   TROVE domain-like  
9600.ENSPPYP00000022027   0.0641   253-343   TROVE domain-like  
9606.ENSP00000299259   0.0144   69-216   TROVE domain-like  
9606.ENSP00000307781   0.0654   229-319   TROVE domain-like  
9615.ENSCAFP00000021903   0.0144   69-216   TROVE domain-like  
9615.ENSCAFP00000029714   0.068   253-349   TROVE domain-like  
9615.ENSCAFP00000029744   0.0523   369-438   TROVE domain-like  
9796.ENSECAP00000009789   0.0562   292-388   TROVE domain-like  
9913.ENSBTAP00000017862   0.0144   69-216   TROVE domain-like  
9913.ENSBTAP00000020325   0.0994   253-353   TROVE domain-like  
9913.ENSBTAP00000051729   0.0144   69-216   TROVE domain-like  
9986.ENSOCUP00000005579   0.0144   69-216   TROVE domain-like  
9986.ENSOCUP00000014219   0.0745   292-388   TROVE domain-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   10740 10740
No Yes Homo sapiens 76_38 Human 13 13
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 3 3
No Yes Pongo abelii 76_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 2
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 5 5
No Yes Otolemur garnettii 76_3 Small-eared galago 2 2
No Yes Microcebus murinus 76_1 Gray mouse lemur 3 2
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 2 2
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 3 2
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 3 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Cavia porcellus 76_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Ochotona princeps 76 American pika 2 2
No Yes Tupaia belangeri 76 Northern tree shrew 3 2
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 2 2
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 2
No Yes Canis familiaris 76_3.1 Dog 2 2
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 2 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 3 2
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 3 2
No Yes Loxodonta africana 76_3 African savanna elephant 2 2
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 3 2
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 2
No Yes Saccoglossus kowalevskii v3.0   2 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 76_2.0 Green anole 2 2
No Yes Xenopus laevis African clawed frog 10 10
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 3 2
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 3 3
No Yes Takifugu rubripes 76_4 Torafugu 4 4
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 76_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 2 2
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 3 3
No Yes Danio rerio 76_9 Zebrafish 6 6
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 4 4
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 3
No Yes Adineta vaga   4 4
No Yes Octopus bimaculoides 280   3 3
No Yes Crassostrea gigas 22 Pacific oyster 9 8
No Yes Lottia gigantea Owl limpet 2 2
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   2 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 1 1
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 5 5
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Strigamia maritima 22   2 2
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   4 2
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   5 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   2 2
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   2 2
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   2 2
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   3 2
No Yes Monosiga brevicollis   2 2
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   2 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Oryza meridionalis 22   1 1
No Yes Oryza punctata 22   2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   5 3
No Yes Cyanophora paradoxa   1 1
No Yes Leishmania mexicana 2.4   2 1
No Yes Leishmania major strain Friedlin   2 1
No Yes Leishmania infantum JPCM5 2.4   2 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   2 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Paramecium tetraurelia   3 3
No Yes Tetrahymena thermophila SB210 1   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Acaryochloris marina MBIC11017   2 2
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Rivularia sp. PCC 7116   2 2
No Yes Calothrix sp. PCC 7507   2 2
No Yes Nostoc sp. PCC 7107   2 2
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7524   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces scabiei 87.22   2 2
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Propionibacterium propionicum F0230a   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus radiodurans R1   1 1
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Ruminococcus albus 7   1 1
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Clostridium cellulovorans 743B   1 1
No Yes Paenibacillus mucilaginosus 3016   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Fibrella aestuarina   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   1 1
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Simkania negevensis Z   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Babela massiliensis   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Sphingobium sp. SYK-6   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   2 2
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Thermus oshimai JL-2   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Paenibacillus mucilaginosus K02   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Sorangium cellulosum So0157-2   2 2
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 14 14
No Yes Homo sapiens (NCBI version) Human 6 6
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 4 4
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 2
No Yes Homo sapiens 69_37 Human 2 2
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 2
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 3 2
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 3 2
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 2
No Yes Cavia porcellus 69_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 2
No Yes Ochotona princeps 69 American pika 2 2
No Yes Tupaia belangeri 69 Northern tree shrew 3 2
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 2 2
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 2 2
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 3 2
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 3 2
No Yes Loxodonta africana 69_3 African savanna elephant 2 2
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 3 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 69_2.0 Green anole 2 2
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 2 1
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 3 3
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 69_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes 3_050719R (meta-genome)   3 3
No Yes 4_050719Q (meta-genome)   6 6
No Yes 5_050719P (meta-genome)   7 7
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   4 4
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   13 13
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   6 6
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   6900 6882
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes Protozoadb 2010_08 (Protozoadb)   7 4
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   11 11
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   10 10
No Yes STRING v9.0.5 (STRING)   145 142
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   7 7
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   4 4
No Yes Uniprot 2018_03 genome   2444 2383
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   28 28
No Yes NCBI plasmid sequences (Plasmids)   8 8
No Yes NCBI viral sequences (Viral)   19 19
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   6 6
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   11 11
No Yes TargetDB (Targets)   7 7
No Yes The Salmonella enterica Pan-genome (meta-genome)   18 18
No Yes UniProt viral sequences (Viral)   9 9

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