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  Home > Genomes > NCBI 2017_08 genome > RUN domain-like domains


RUN domain-like superfamily domain assignments
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NCBI 2017_08 genome

Assignment details

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Showing sequences 1 to 3000 of 13864
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NCBI 2017_08 genome has 15193 significant domains in 13864 proteins.

     

Sequence ID   Evalue   Region   Family  
NP_001007417.1.45394   5.89e-46   22-184   RUN domain  
NP_001009677.1.100692   9.68e-41   15-186   RUN domain  
NP_001009677.1.4139   9.68e-41   15-186   RUN domain  
NP_001014357.1.45394   4.58e-52   68-231   RUN domain  
NP_001016214.1.99540   3.14e-49   33-197   RUN domain  
NP_001020298.1.100692   1.96e-53   66-231   RUN domain  
NP_001020298.1.4139   1.96e-53   66-231   RUN domain  
NP_001026095.1.86415   8.37e-41   11-185   RUN domain  
NP_001026143.1.86415   7.06e-46   25-187   RUN domain  
NP_001028322.1.92730   4.45e-32   4-161   RUN domain  
NP_001029232.2.92730   1.83e-22   2-86   RUN domain  
NP_001032519.1.87134   8.24e-54   66-231   RUN domain  
NP_001032519.1.92137   8.24e-54   66-231   RUN domain  
NP_001032798.1.92730   0.0000000012   999-1173   RUN domain  
NP_001035037.1.87134   8.37e-36   8-199   RUN domain  
NP_001035037.1.92137   8.37e-36   8-199   RUN domain  
NP_001035541.1.87134   5.23e-51   1-167   RUN domain  
NP_001035541.1.92137   5.23e-51   1-167   RUN domain  
NP_001035542.1.87134   5.23e-51   1-167   RUN domain  
NP_001035542.1.92137   5.23e-51   1-167   RUN domain  
NP_001035882.1.87134   2.62e-30   9-139   RUN domain  
NP_001035882.1.92137   2.62e-30   9-139   RUN domain  
NP_001039304.2.86415   7.45e-40   11-172   RUN domain  
NP_001040581.1.100692   6.28e-46   27-189   RUN domain  
NP_001040581.1.4139   6.28e-46   27-189   RUN domain  
NP_001041461.1.78797   9.55e-38   6-168   RUN domain  
NP_001069790.1.59421   1.31e-45   26-188   RUN domain  
NP_001069790.1.76553   1.31e-45   26-188   RUN domain  
NP_001070013.1.59421   0.000000000000575   560-592,626-714   RUN domain  
NP_001070013.1.76553   0.000000000000575   560-592,626-714   RUN domain  
NP_001070330.1.59421   9.15e-42   11-185   RUN domain  
NP_001070330.1.76553   9.15e-42   11-185   RUN domain  
NP_001070342.1.59421   2.88e-44   30-209   RUN domain  
NP_001070342.1.76553   2.88e-44   30-209   RUN domain  
NP_001072214.1.99540   1.44e-53   66-231   RUN domain  
NP_001072911.1.99540   1.11e-44   26-187   RUN domain  
NP_001075896.1.59421   0.00000000275   996-1170   RUN domain  
NP_001075896.1.76553   0.00000000275   996-1170   RUN domain  
NP_001077276.1.92730   0.00000000575   479-656   RUN domain  
NP_001077277.1.92730   0.00000000144   16-194   RUN domain  
NP_001087388.1.7800   1.96e-53   66-231   RUN domain  
NP_001091967.1.87134   7.72e-36   8-199   RUN domain  
NP_001091967.1.92137   7.72e-36   8-199   RUN domain  
NP_001091968.1.87134   7.06e-36   8-199   RUN domain  
NP_001091968.1.92137   7.06e-36   8-199   RUN domain  
NP_001091979.1.87134   2.22e-33   8-96,123-200   RUN domain  
NP_001091979.1.92137   2.22e-33   8-96,123-200   RUN domain  
NP_001093372.1.7800   0.00000000131   566-597,636-718   RUN domain  
NP_001094197.1.100692   7.06e-51   112-278   RUN domain  
NP_001094197.1.4139   7.06e-51   112-278   RUN domain  
NP_001095367.2.59421   9.02e-33   22-187   RUN domain  
NP_001095367.2.76553   9.02e-33   22-187   RUN domain  
NP_001095551.2.59421   7.72e-44   8-170   RUN domain  
NP_001095551.2.76553   7.72e-44   8-170   RUN domain  
NP_001098673.1.87134   0.0000000123   487-663   RUN domain  
NP_001098673.1.92137   0.0000000123   487-663   RUN domain  
NP_001098674.1.87134   0.0000107   487-619   RUN domain  
NP_001098674.1.92137   0.0000107   487-619   RUN domain  
NP_001098675.1.87134   0.00000000405   76-253   RUN domain  
NP_001098675.1.92137   0.00000000405   76-253   RUN domain  
NP_001099151.2.45394   5.23e-50   33-197   RUN domain  
NP_001099407.2.100692   5.62e-35   8-199   RUN domain  
NP_001099407.2.4139   5.62e-35   8-199   RUN domain  
NP_001100340.1.100692   7.32e-40   10-172   RUN domain  
NP_001100340.1.4139   7.32e-40   10-172   RUN domain  
NP_001100490.1.100692   1.02e-33   8-96,123-200   RUN domain  
NP_001100490.1.4139   1.02e-33   8-96,123-200   RUN domain  
NP_001101016.2.100692   7.19e-36   748-824,858-947   RUN domain  
  1.96e-26   1107-1280   RUN domain  
NP_001101016.2.4139   7.19e-36   748-824,858-947   RUN domain  
  1.96e-26   1107-1280   RUN domain  
NP_001102996.2.100692   1.96e-41   9-184   RUN domain  
NP_001102996.2.4139   1.96e-41   9-184   RUN domain  
NP_001103723.2.92730   5.36e-39   10-172   RUN domain  
NP_001106422.1.99540   4.58e-35   9-199   RUN domain  
NP_001121230.1.7800   3.92e-49   2-166   RUN domain  
NP_001121468.1.99540   3.66e-34   747-823,856-945   RUN domain  
  1.24e-27   1105-1279   RUN domain  
NP_001121949.1.46622   1.7e-40   95-257   RUN domain  
NP_001123335.1.78797   1.31e-47   51-211   RUN domain  
NP_001123837.1.99540   0.00000000000876   565-597,636-718   RUN domain  
NP_001124181.1.87134   5.62e-54   126-291   RUN domain  
NP_001124181.1.92137   5.62e-54   126-291   RUN domain  
NP_001124255.1.45394   4.71e-32   5-161   RUN domain  
NP_001125495.1.23681   0.000000000000759   563-595,632-717   RUN domain  
NP_001126704.1.23681   1.44e-48   9-173   RUN domain  
NP_001126835.1.23681   4.58e-43   26-193   RUN domain  
NP_001126891.1.23681   4.71e-54   66-231   RUN domain  
NP_001127352.1.23681   0.00000000196   3-179   RUN domain  
NP_001127535.1.23681   0.0000000379   8-51   RUN domain  
NP_001127877.1.87134   9.15e-46   31-193   RUN domain  
NP_001127877.1.92137   9.15e-46   31-193   RUN domain  
NP_001127878.1.87134   7.06e-46   31-193   RUN domain  
NP_001127878.1.92137   7.06e-46   31-193   RUN domain  
NP_001129007.1.23681   9.15e-46   31-193   RUN domain  
NP_001129471.1.87134   0.0000000235   995-1169   RUN domain  
NP_001129471.1.92137   0.0000000235   995-1169   RUN domain  
NP_001133360.1.97760   1.31e-49   100-263   RUN domain  
NP_001133598.1.97760   0.000000667   489-557   RUN domain  
NP_001134849.1.97760   6.15e-17   13-101   RUN domain  
NP_001135644.1.99540   1.16e-36   727-802,833-921   RUN domain  
  1.18e-29   1084-1260   RUN domain  
NP_001138297.1.87134   4.58e-43   26-193   RUN domain  
NP_001138297.1.92137   4.58e-43   26-193   RUN domain  
NP_001138298.1.87134   3.92e-45   26-188   RUN domain  
NP_001138298.1.92137   3.92e-45   26-188   RUN domain  
NP_001139114.1.87134   6.8e-22   1-127   RUN domain  
NP_001139114.1.92137   6.8e-22   1-127   RUN domain  
NP_001156437.1.92730   5.49e-35   8-199   RUN domain  
NP_001162058.1.100692   8.63e-49   9-173   RUN domain  
NP_001162058.1.4139   8.63e-49   9-173   RUN domain  
NP_001164112.1.92730   7.59e-44   8-170   RUN domain  
NP_001178451.1.59421   5.49e-54   124-289   RUN domain  
NP_001178451.1.76553   5.49e-54   124-289   RUN domain  
NP_001178696.1.100692   5.23e-32   4-161   RUN domain  
NP_001178696.1.4139   5.23e-32   4-161   RUN domain  
NP_001179345.1.59421   1.44e-31   4-161   RUN domain  
NP_001179345.1.76553   1.44e-31   4-161   RUN domain  
NP_001179350.1.59421   4.45e-32   11-189   RUN domain  
NP_001179350.1.76553   4.45e-32   11-189   RUN domain  
NP_001186967.1.92730   8.11e-32   23-188   RUN domain  
NP_001192417.1.59421   2.48e-38   733-809,840-928   RUN domain  
  2.62e-28   1091-1268   RUN domain  
NP_001192417.1.76553   2.48e-38   733-809,840-928   RUN domain  
  2.62e-28   1091-1268   RUN domain  
NP_001192610.1.59421   0.000000017   530-601   RUN domain  
NP_001192610.1.76553   0.000000017   530-601   RUN domain  
NP_001193636.1.59421   7.85e-49   9-173   RUN domain  
NP_001193636.1.76553   7.85e-49   9-173   RUN domain  
NP_001230183.1.87134   8.24e-36   748-824,858-947   RUN domain  
  0.0000000000628   1107-1212   RUN domain  
NP_001230183.1.92137   8.24e-36   748-824,858-947   RUN domain  
  0.0000000000628   1107-1212   RUN domain  
NP_001231644.1.46622   1.16e-32   22-187   RUN domain  
NP_001231848.1.45394   6.15e-50   99-263   RUN domain  
NP_001239276.1.92730   3.66e-43   26-193   RUN domain  
NP_001241660.1.92730   2.48e-35   8-199   RUN domain  
NP_001244198.1.86415   2.48e-52   95-260   RUN domain  
NP_001253595.1.72884   0.0000000157   995-1170   RUN domain  
NP_001254407.1.50509   3.92e-31   28-195   RUN domain  
NP_001254408.1.50509   3.92e-31   18-185   RUN domain  
NP_001255072.1.50509   9.81e-26   78-234   RUN domain  
NP_001259348.1.81976   0.000000405   92-203   RUN domain  
NP_001265154.1.87134   1.14e-29   5-115   RUN domain  
NP_001265154.1.92137   1.14e-29   5-115   RUN domain  
NP_001265156.1.87134   0.0000000379   16-161   RUN domain  
NP_001265156.1.92137   0.0000000379   16-161   RUN domain  
NP_001265157.1.87134   0.0000000123   50-188   RUN domain  
NP_001265157.1.92137   0.0000000123   50-188   RUN domain  
NP_001265158.1.87134   0.00000196   17-150   RUN domain  
NP_001265158.1.92137   0.00000196   17-150   RUN domain  
NP_001265159.1.87134   0.00000000301   17-194   RUN domain  
NP_001265159.1.92137   0.00000000301   17-194   RUN domain  
NP_001270186.1.63531   9.15e-46   31-193   RUN domain  
NP_001276703.1.92730   1.83e-52   116-281   RUN domain  
NP_001276704.1.92730   1.16e-52   116-281   RUN domain  
NP_001276705.1.92730   1.02e-52   84-249   RUN domain  
NP_001276706.1.92730   1.02e-52   84-249   RUN domain  
NP_001278922.1.87134   6.93e-54   13-178   RUN domain  
NP_001278922.1.92137   6.93e-54   13-178   RUN domain  
NP_001278923.1.87134   5.1e-54   84-249   RUN domain  
NP_001278923.1.92137   5.1e-54   84-249   RUN domain  
NP_001285494.1.81976   1.31e-29   11-99,152-229   RUN domain  
NP_001287559.1.81976   1.07e-44   281-445   RUN domain  
NP_001287560.1.81976   1.2e-44   281-445   RUN domain  
NP_001288778.1.87134   0.0000000000301   480-506,543-628   RUN domain  
NP_001288778.1.92137   0.0000000000301   480-506,543-628   RUN domain  
NP_001295268.1.87134   9.29e-39   769-844,875-963   RUN domain  
  1.26e-28   1126-1303   RUN domain  
NP_001295268.1.92137   9.29e-39   769-844,875-963   RUN domain  
  1.26e-28   1126-1303   RUN domain  
NP_001298068.1.92730   7.45e-36   724-800,834-923   RUN domain  
  1.83e-26   1083-1256   RUN domain  
NP_001303548.1.81976   8.24e-45   281-445   RUN domain  
NP_001308310.1.87134   0.0000000314   531-603   RUN domain  
NP_001308310.1.92137   0.0000000314   531-603   RUN domain  
NP_001314780.1.45394   8.76e-39   16-188   RUN domain  
NP_001314781.1.45394   0.000000000144   16-121   RUN domain  
NP_006686.1.87134   3.66e-43   26-193   RUN domain  
NP_006686.1.92137   3.66e-43   26-193   RUN domain  
NP_055143.2.87134   0.00000000301   17-194   RUN domain  
NP_055143.2.92137   0.00000000301   17-194   RUN domain  
NP_055502.1.87134   4.18e-31   22-187   RUN domain  
NP_055502.1.92137   4.18e-31   22-187   RUN domain  
NP_055613.1.87134   4.32e-42   18-187   RUN domain  
NP_055613.1.92137   4.32e-42   18-187   RUN domain  
NP_055621.1.87134   0.0000000235   995-1169   RUN domain  
NP_055621.1.92137   0.0000000235   995-1169   RUN domain  
NP_055668.2.87134   2.35e-33   8-96,123-200   RUN domain  
NP_055668.2.92137   2.35e-33   8-96,123-200   RUN domain  
NP_055776.1.87134   4.71e-54   66-231   RUN domain  
NP_055776.1.92137   4.71e-54   66-231   RUN domain  
NP_055979.2.87134   6.67e-31   5-161   RUN domain  
NP_055979.2.92137   6.67e-31   5-161   RUN domain  
NP_056028.2.87134   8.76e-36   748-824,858-947   RUN domain  
  2.35e-26   1107-1280   RUN domain  
NP_056028.2.92137   8.76e-36   748-824,858-947   RUN domain  
  2.35e-26   1107-1280   RUN domain  
NP_056520.2.87134   0.000000000000759   563-595,632-717   RUN domain  
NP_056520.2.92137   0.000000000000759   563-595,632-717   RUN domain  
NP_058039.1.92730   4.32e-43   26-193   RUN domain  
NP_060457.4.87134   1.7e-48   44-208   RUN domain  
NP_060457.4.92137   1.7e-48   44-208   RUN domain  
NP_067469.1.92730   7.72e-36   748-824,858-947   RUN domain  
  1.96e-26   1107-1280   RUN domain  
NP_078789.2.87134   2.35e-40   10-172   RUN domain  
NP_078789.2.92137   2.35e-40   10-172   RUN domain  
NP_079434.3.87134   6.93e-51   109-275   RUN domain  
NP_079434.3.92137   6.93e-51   109-275   RUN domain  
NP_081701.2.92730   7.59e-49   9-173   RUN domain  
NP_081806.1.92730   9.42e-53   66-231   RUN domain  
NP_082464.2.92730   0.00000000719   616-793   RUN domain  
NP_083240.2.92730   1.44e-41   9-184   RUN domain  
NP_115543.3.87134   2.35e-42   8-184   RUN domain  
NP_115543.3.92137   2.35e-42   8-184   RUN domain  
NP_492018.1.50509   0.000000955   429-526   RUN domain  
NP_495437.2.50509   1.01e-30   763-838,1038-1128   RUN domain  
  2.09e-22   1308-1480   RUN domain  
NP_508136.2.50509   0.00000000471   363-415,450-536   RUN domain  
NP_509421.2.50509   0.000000811   607-640,694-763   RUN domain  
NP_569874.1.81976   0.00000222   516-548,635-702   RUN domain  
NP_572496.1.81976   0.000000405   92-203   RUN domain  
NP_597711.1.87134   7.59e-36   8-199   RUN domain  
NP_597711.1.92137   7.59e-36   8-199   RUN domain  
NP_598852.3.92730   0.000000000000445   563-595,629-717   RUN domain  
NP_608395.6.81976   1.31e-29   11-99,152-229   RUN domain  
NP_609607.1.81976   4.97e-30   29-211   RUN domain  
NP_611639.1.81976   3.4e-33   19-189   RUN domain  
NP_612147.1.87134   2.88e-43   31-210   RUN domain  
NP_612147.1.92137   2.88e-43   31-210   RUN domain  
NP_647620.1.81976   7.59e-33   845-918,999-1088   RUN domain  
  6.93e-24   1243-1312,1352-1438   RUN domain  
NP_650432.1.81976   0.000000000837   619-651,688-772   RUN domain  
NP_651545.2.81976   1.18e-44   328-492   RUN domain  
NP_659410.3.87134   9.02e-39   734-809,840-928   RUN domain  
  1.2e-28   1091-1268   RUN domain  
NP_659410.3.92137   9.02e-39   734-809,840-928   RUN domain  
  1.2e-28   1091-1268   RUN domain  
NP_683727.3.92730   5.36e-39   10-172   RUN domain  
NP_728346.2.81976   2.22e-31   28-117,172-247   RUN domain  
NP_728624.1.81976   7.59e-33   845-918,999-1088   RUN domain  
  6.93e-24   1243-1312,1352-1438   RUN domain  
NP_733203.1.81976   8.89e-45   133-297   RUN domain  
NP_733204.1.81976   7.59e-45   133-297   RUN domain  
NP_766145.1.92730   7.06e-51   113-279   RUN domain  
NP_766154.2.92730   0.0000000314   532-603   RUN domain  
NP_766203.1.92730   7.98e-32   23-188   RUN domain  
NP_766306.2.92730   5.62e-35   8-199   RUN domain  
NP_775102.2.87134   0.0000000314   529-601   RUN domain  
NP_775102.2.92137   0.0000000314   529-601   RUN domain  
NP_796166.2.92730   6.41e-38   733-809,840-928   RUN domain  
  6.41e-29   1091-1268   RUN domain  
NP_898855.1.92730   1.83e-40   15-186   RUN domain  
NP_922934.2.92730   6.41e-34   8-96,123-200   RUN domain  
NP_940885.2.87134   3.53e-44   9-170   RUN domain  
NP_940885.2.92137   3.53e-44   9-170   RUN domain  
NP_941022.1.92730   6.41e-46   32-194   RUN domain  
NP_942053.2.100692   4.45e-43   26-193   RUN domain  
NP_942053.2.4139   4.45e-43   26-193   RUN domain  
NP_942082.2.100692   0.000000000000458   576-608,642-730   RUN domain  
NP_942082.2.4139   0.000000000000458   576-608,642-730   RUN domain  
NP_951012.2.92730   0.0000000012   999-1173   RUN domain  
NP_956443.1.45394   1.24e-46   26-186   RUN domain  
NP_989082.1.99540   1.22e-44   22-184   RUN domain  
NP_997809.1.45394   7.85e-38   770-846,877-965   RUN domain  
  1.7e-28   1126-1304   RUN domain  
NP_998495.1.45394   0.00000000000000288   558-599,633-721   RUN domain  
 
Weak hits:
NP_001093322.2.87134   0.0732   78-170   RUN domain  
NP_001093322.2.92137   0.0732   78-170   RUN domain  
NP_001138567.1.87134   0.0353   457-523   RUN domain  
NP_001138567.1.92137   0.0353   457-523   RUN domain  
NP_001293001.1.87134   0.0811   81-173   RUN domain  
NP_001293001.1.92137   0.0811   81-173   RUN domain  
NP_001297063.1.87134   0.0811   81-173   RUN domain  
NP_001297063.1.92137   0.0811   81-173   RUN domain  
NP_173618.1.80155   0.0068   62-119   RUN domain  
NP_593052.1.19918   0.0889   129-152   RUN domain  
NP_730652.1.81976   0.0124   12-98   RUN domain  
NP_794689.1.37326   0.0209   71-123   RUN domain  
WP_000002852.1.12358   0.00654   521-562   RUN domain  
WP_000002852.1.30173   0.00654   521-562   RUN domain  
WP_000002852.1.43672   0.00654   521-562   RUN domain  
WP_000002852.1.62032   0.00654   521-562   RUN domain  
WP_000002852.1.64658   0.00654   521-562   RUN domain  
WP_000002852.1.73636   0.00654   521-562   RUN domain  
WP_000002852.1.88851   0.00654   521-562   RUN domain  
WP_000002853.1.2215   0.0222   521-562   RUN domain  
WP_000002853.1.23176   0.0222   521-562   RUN domain  
WP_000002853.1.36110   0.0222   521-562   RUN domain  
WP_000002853.1.4761   0.0222   521-562   RUN domain  
WP_000002853.1.48451   0.0222   521-562   RUN domain  
WP_000002853.1.62549   0.0222   521-562   RUN domain  
WP_000002853.1.63241   0.0222   521-562   RUN domain  
WP_000002853.1.63796   0.0222   521-562   RUN domain  
WP_000002853.1.6454   0.0222   521-562   RUN domain  
WP_000002853.1.65080   0.0222   521-562   RUN domain  
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WP_021526059.1.60228   0.0667   28-73   RUN domain  
WP_021526059.1.61551   0.0667   28-73   RUN domain  
WP_021526059.1.62264   0.0667   28-73   RUN domain  
WP_021526059.1.72663   0.0667   28-73   RUN domain  
WP_021526059.1.99209   0.0667   28-73   RUN domain  
WP_021545901.1.84972   0.0353   62-112,152-178   RUN domain  
WP_022575197.1.52746   0.017   521-562   RUN domain  
WP_022575197.1.85656   0.017   521-562   RUN domain  
WP_022575483.1.52746   0.0405   259-331   RUN domain  
WP_022575483.1.85656   0.0405   259-331   RUN domain  
WP_023014033.1.42256   0.0392   520-561   RUN domain  
WP_023036268.1.8299   0.0183   50-111   RUN domain  
WP_023060570.1.21798   0.068   122-194   RUN domain  
WP_023187757.1.16785   0.0641   521-562   RUN domain  
WP_023187757.1.93557   0.0641   521-562   RUN domain  
WP_023265028.1.2887   0.0837   70-139   RUN domain  
WP_023266249.1.77687   0.0667   265-318   RUN domain  
WP_023294357.1.101964   0.00288   9-40   RUN domain  
WP_023294357.1.14407   0.00288   9-40   RUN domain  
WP_023294357.1.26600   0.00288   9-40   RUN domain  
WP_023294357.1.35323   0.00288   9-40   RUN domain  
WP_023294357.1.40423   0.00288   9-40   RUN domain  
WP_023294357.1.45695   0.00288   9-40   RUN domain  
WP_023294357.1.659   0.00288   9-40   RUN domain  
WP_023294357.1.79893   0.00288   9-40   RUN domain  
WP_023294357.1.89153   0.00288   9-40   RUN domain  
WP_023294357.1.92155   0.00288   9-40   RUN domain  
WP_023294357.1.92822   0.00288   9-40   RUN domain  
WP_023294357.1.98949   0.00288   9-40   RUN domain  
WP_023444902.1.35692   0.0484   70-128   RUN domain  
WP_023463881.1.23888   0.0902   135-198   RUN domain  
WP_023485254.1.2936   0.00942   228-279   RUN domain  
WP_023485254.1.32865   0.00942   228-279   RUN domain  
WP_023485254.1.33316   0.00942   228-279   RUN domain  
WP_023485254.1.35586   0.00942   228-279   RUN domain  
WP_023485254.1.96379   0.00942   228-279   RUN domain  
WP_023565574.1.19100   0.0366   27-107   RUN domain  
WP_023632222.1.17606   0.0837   174-226   RUN domain  
WP_023789736.1.100365   0.0183   138-198   RUN domain  
WP_023893649.1.95389   0.0144   119-210   RUN domain  
WP_023896187.1.64177   0.0209   521-562   RUN domain  
WP_023975796.1.41106   0.0706   221-248   RUN domain  
WP_023975796.1.95078   0.0706   221-248   RUN domain  
WP_024436568.1.46337   0.0209   521-562   RUN domain  
WP_024436568.1.5300   0.0209   521-562   RUN domain  
WP_024436568.1.54712   0.0209   521-562   RUN domain  
WP_024436568.1.80347   0.0209   521-562   RUN domain  
WP_024436568.1.92128   0.0209   521-562   RUN domain  
WP_024652402.1.19682   0.0222   71-124   RUN domain  
WP_024652402.1.49784   0.0222   71-124   RUN domain  
WP_024652402.1.58699   0.0222   71-124   RUN domain  
WP_025211532.1.31021   0.012   71-125   RUN domain  
WP_025464218.1.10577   0.0641   521-562   RUN domain  
WP_025464218.1.17255   0.0641   521-562   RUN domain  
WP_025464218.1.19026   0.0641   521-562   RUN domain  
WP_025464218.1.22540   0.0641   521-562   RUN domain  
WP_025464218.1.24130   0.0641   521-562   RUN domain  
WP_025464218.1.27093   0.0641   521-562   RUN domain  
WP_025464218.1.28666   0.0641   521-562   RUN domain  
WP_025464218.1.32082   0.0641   521-562   RUN domain  
WP_025464218.1.33112   0.0641   521-562   RUN domain  
WP_025464218.1.33990   0.0641   521-562   RUN domain  
WP_025464218.1.34672   0.0641   521-562   RUN domain  
WP_025464218.1.41946   0.0641   521-562   RUN domain  
WP_025464218.1.44518   0.0641   521-562   RUN domain  
WP_025464218.1.44895   0.0641   521-562   RUN domain  
WP_025464218.1.46031   0.0641   521-562   RUN domain  
WP_025464218.1.47968   0.0641   521-562   RUN domain  
WP_025464218.1.49456   0.0641   521-562   RUN domain  
WP_025464218.1.5089   0.0641   521-562   RUN domain  
WP_025464218.1.54053   0.0641   521-562   RUN domain  
WP_025464218.1.5629   0.0641   521-562   RUN domain  
WP_025464218.1.60333   0.0641   521-562   RUN domain  
WP_025464218.1.65610   0.0641   521-562   RUN domain  
WP_025464218.1.68333   0.0641   521-562   RUN domain  
WP_025464218.1.70636   0.0641   521-562   RUN domain  
WP_025464218.1.72314   0.0641   521-562   RUN domain  
WP_025464218.1.74047   0.0641   521-562   RUN domain  
WP_025464218.1.77264   0.0641   521-562   RUN domain  
WP_025464218.1.79603   0.0641   521-562   RUN domain  
WP_025464218.1.83027   0.0641   521-562   RUN domain  
WP_025464218.1.83233   0.0641   521-562   RUN domain  
WP_025464218.1.84196   0.0641   521-562   RUN domain  
WP_025464218.1.8589   0.0641   521-562   RUN domain  
WP_025464218.1.86200   0.0641   521-562   RUN domain  
WP_025464218.1.90508   0.0641   521-562   RUN domain  
WP_025464218.1.93042   0.0641   521-562   RUN domain  
WP_025464218.1.9318   0.0641   521-562   RUN domain  
WP_025464218.1.97698   0.0641   521-562   RUN domain  
WP_025464218.1.98696   0.0641   521-562   RUN domain  
WP_025464218.1.98783   0.0641   521-562   RUN domain  
WP_031949393.1.34452   0.0889   521-562   RUN domain  
WP_031950993.1.11989   0.0209   521-562   RUN domain  
WP_031950993.1.15651   0.0209   521-562   RUN domain  
WP_031950993.1.23997   0.0209   521-562   RUN domain  
WP_031950993.1.26715   0.0209   521-562   RUN domain  
WP_031950993.1.32374   0.0209   521-562   RUN domain  
WP_031950993.1.34045   0.0209   521-562   RUN domain  
WP_031950993.1.35242   0.0209   521-562   RUN domain  
WP_031950993.1.40645   0.0209   521-562   RUN domain  
WP_031950993.1.42708   0.0209   521-562   RUN domain  
WP_031950993.1.50815   0.0209   521-562   RUN domain  
WP_031950993.1.51640   0.0209   521-562   RUN domain  
WP_031950993.1.54266   0.0209   521-562   RUN domain  
WP_031950993.1.63303   0.0209   521-562   RUN domain  
WP_031950993.1.65866   0.0209   521-562   RUN domain  
WP_031950993.1.67601   0.0209   521-562   RUN domain  
WP_031950993.1.70197   0.0209   521-562   RUN domain  
WP_031950993.1.73727   0.0209   521-562   RUN domain  
WP_031950993.1.7521   0.0209   521-562   RUN domain  
WP_031950993.1.7606   0.0209   521-562   RUN domain  
WP_031950993.1.76698   0.0209   521-562   RUN domain  
WP_031950993.1.836   0.0209   521-562   RUN domain  
WP_031950993.1.88133   0.0209   521-562   RUN domain  
WP_031950993.1.93948   0.0209   521-562   RUN domain  
WP_031950993.1.94948   0.0209   521-562   RUN domain  
WP_031950993.1.96930   0.0209   521-562   RUN domain  
WP_031952827.1.57066   0.0405   259-331   RUN domain  
WP_031952827.1.67584   0.0405   259-331   RUN domain  
WP_031953719.1.57066   0.0183   521-562   RUN domain  
WP_031953719.1.67584   0.0183   521-562   RUN domain  
WP_031953921.1.21662   0.0209   521-562   RUN domain  
WP_031953921.1.45418   0.0209   521-562   RUN domain  
WP_031956221.1.370   0.0418   123-195   RUN domain  
WP_031956464.1.29521   0.0183   521-562   RUN domain  
WP_031956464.1.370   0.0183   521-562   RUN domain  
WP_031961317.1.11924   0.0209   521-562   RUN domain  
WP_031961317.1.22104   0.0209   521-562   RUN domain  
WP_031961317.1.25810   0.0209   521-562   RUN domain  
WP_031961317.1.27531   0.0209   521-562   RUN domain  
WP_031961317.1.34986   0.0209   521-562   RUN domain  
WP_031961317.1.37007   0.0209   521-562   RUN domain  
WP_031961317.1.37212   0.0209   521-562   RUN domain  
WP_031961317.1.37695   0.0209   521-562   RUN domain  
WP_031961317.1.43380   0.0209   521-562   RUN domain  
WP_031961317.1.4426   0.0209   521-562   RUN domain  
WP_031961317.1.44538   0.0209   521-562   RUN domain  
WP_031961317.1.46209   0.0209   521-562   RUN domain  
WP_031961317.1.47475   0.0209   521-562   RUN domain  
WP_031961317.1.52644   0.0209   521-562   RUN domain  
WP_031961317.1.60371   0.0209   521-562   RUN domain  
WP_031961317.1.6519   0.0209   521-562   RUN domain  
WP_031961317.1.69458   0.0209   521-562   RUN domain  
WP_031961317.1.70739   0.0209   521-562   RUN domain  
WP_031961317.1.73820   0.0209   521-562   RUN domain  
WP_031961317.1.76216   0.0209   521-562   RUN domain  
WP_031961317.1.78988   0.0209   521-562   RUN domain  
WP_031961317.1.85101   0.0209   521-562   RUN domain  
WP_031961317.1.87156   0.0209   521-562   RUN domain  
WP_031961317.1.87717   0.0209   521-562   RUN domain  
WP_031961317.1.9   0.0209   521-562   RUN domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   29812 29812
No Yes Homo sapiens 76_38 Human 82 77
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 23 21
No Yes Gorilla gorilla 76_3.1 Western gorilla 30 28
No Yes Pongo abelii 76_2 Sumatran orangutan 23 20
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 22 19
No Yes Papio anubis 76 Olive baboon 22 20
No Yes Macaca mulatta 76_1 Rhesus monkey 27 24
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 46 43
No Yes Otolemur garnettii 76_3 Small-eared galago 21 19
No Yes Microcebus murinus 76_1 Gray mouse lemur 20 17
No Yes Rattus norvegicus 76_5.0 Norway rat 25 23
No Yes Mus musculus 76_38 House mouse 48 45
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 18 16
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 20 18
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 23 20
No Yes Cavia porcellus 76_3 Domestic guinea pig 19 18
No Yes Oryctolagus cuniculus 76_2 Rabbit 21 19
No Yes Ochotona princeps 76 American pika 19 17
No Yes Tupaia belangeri 76 Northern tree shrew 17 14
No Yes Sus scrofa 76_10.2 Pig 24 22
No Yes Bos taurus 76_3.1 Cattle 26 25
No Yes Ovis aries 76_3.1 Sheep 24 21
No Yes Vicugna pacos 76_1 Alpaca 12 10
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 21 19
No Yes Mustela putorius furo 76_1.0 Domestic ferret 19 17
No Yes Ailuropoda melanoleuca 76_1 Giant panda 21 19
No Yes Canis familiaris 76_3.1 Dog 34 30
No Yes Felis catus 76_6.2 Domestic cat 18 16
No Yes Equus caballus 76_2 Horse 24 22
No Yes Myotis lucifugus 76_2.0 Little brown bat 21 19
No Yes Pteropus vampyrus 76_1 Large flying fox 20 18
No Yes Sorex araneus 76_1 European shrew 13 13
No Yes Erinaceus europaeus 76 Western European hedgehog 13 12
No Yes Procavia capensis 76_1 Cape rock hyrax 20 18
No Yes Loxodonta africana 76_3 African savanna elephant 29 27
No Yes Echinops telfairi 76 Small Madagascar hedgehog 17 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 30 28
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 13 11
No Yes Macropus eugenii 76_1.0 Tammar wallaby 20 17
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 24 22
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 22 20
No Yes Ornithorhynchus anatinus 76_5 Platypus 25 24
No Yes Saccoglossus kowalevskii v3.0   21 18
No Yes Petromyzon marinus 76_7.0 Sea lamprey 14 13
No Yes Meleagris gallopavo 76_2 Turkey 19 17
No Yes Gallus gallus 76_4 Chicken 20 18
No Yes Anas platyrhynchos 76_1.0 Mallard 18 16
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 25 23
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 21 19
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 18 16
No Yes Anolis carolinensis 76_2.0 Green anole 21 20
No Yes Xenopus laevis African clawed frog 9 9
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 26 23
No Yes Latimeria chalumnae 76_1 Coelacanth 19 18
No Yes Lepisosteus oculatus 76 Spotted gar 26 24
No Yes Gadus morhua 76_1 Atlantic cod 24 21
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 28 27
No Yes Takifugu rubripes 76_4 Torafugu 72 65
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 30 26
No Yes Oryzias latipes 76_1 Japanese medaka 26 23
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 24 22
No Yes Poecilia formosa 76 Amazon molly 23 21
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 41 35
No Yes Astyanax mexicanus 76 Mexican tetra 22 20
No Yes Danio rerio 76_9 Zebrafish 41 37
No Yes Oikopleura dioica   7 6
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 17 17
No Yes Ciona intestinalis 76 Vase tunicate 9 9
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 15 14
No Yes Adineta vaga   31 29
No Yes Octopus bimaculoides 280   27 24
No Yes Crassostrea gigas 22 Pacific oyster 11 10
No Yes Lottia gigantea Owl limpet 13 12
No Yes Helobdella robusta   10 9
No Yes Capitella sp. I   15 14
No Yes Danaus plexippus OGS1.0 Monarch butterfly 9 8
No Yes Heliconius melpomene Postman butterfly 9 8
No Yes Bombyx mori Domestic silkworm 9 8
No Yes Nasonia vitripennis Jewel wasp 6 6
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 21 17
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 11 10
No Yes Linepithema humile v1.1 Argentine ant 10 9
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 10 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 6 6
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 11 10
No Yes Atta cephalotes v1.1   11 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 11 10
No Yes Lucilia cuprina Australian sheep blowfly 10 9
No Yes Drosophila grimshawi 1.3   10 9
No Yes Drosophila willistoni 1.3   10 9
No Yes Drosophila pseudoobscura 2.13   13 12
No Yes Drosophila persimilis 1.3   10 9
No Yes Drosophila suzukii   11 10
No Yes Drosophila yakuba 1.3   10 9
No Yes Drosophila simulans 1.3   9 8
No Yes Drosophila sechellia 1.3   9 8
No Yes Drosophila melanogaster 76_5 Fruit fly 15 13
No Yes Drosophila erecta 1.3   10 9
No Yes Drosophila ananassae 1.3   11 10
No Yes Drosophila virilis 1.2   10 9
No Yes Drosophila mojavensis 1.3   10 9
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 8 7
No Yes Culex pipiens quinquefasciatus Southern house mosquito 8 7
No Yes Anopheles darlingi 22 American malaria mosquito 6 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 7 6
No Yes Tribolium castaneum 3.0 Red flour beetle 10 9
No Yes Pediculus humanus corporis (Early assembly) Human body louse 12 11
No Yes Acyrthosiphon pisum Pea aphid 5 5
No Yes Rhodnius prolixus 22   11 10
No Yes Daphnia pulex Common water flea 9 8
No Yes Strigamia maritima 22   12 11
No Yes Sarcoptes scabiei   7 6
No Yes Tetranychus urticae Two-spotted spider mite 5 4
No Yes Ixodes scapularis (Preliminary) Black-legged tick 7 7
No Yes Pristionchus pacificus   5 4
No Yes Meloidogyne incognita Southern root-knot nematode 8 7
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   8 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 14 13
No Yes Caenorhabditis japonica   5 4
No Yes Caenorhabditis brenneri   7 7
No Yes Caenorhabditis remanei   8 7
No Yes Caenorhabditis elegans 76_235 Roundworm 8 7
No Yes Caenorhabditis briggsae 2   7 6
No Yes Trichinella spiralis 22   6 6
No Yes Hymenolepis microstoma   9 8
No Yes Echinococcus multilocularis   9 8
No Yes Echinococcus granulosus   8 7
No Yes Taenia solium Pork tapeworm 9 8
No Yes Schistosoma mansoni   13 10
No Yes Mnemiopsis leidyi Sea walnut 9 8
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   10 10
No Yes Nematostella vectensis 1.0 Starlet sea anemone 13 12
No Yes Hydra vulgaris   10 10
No Yes Amphimedon queenslandica   11 10
No Yes Trichoplax adhaerens   9 9
No Yes Proterospongia sp. ATCC 50818   10 9
No Yes Monosiga brevicollis   7 7
No Yes Sphaeroforma arctica JP610   5 5
No Yes Capsaspora owczarzaki ATCC 30864   12 11
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Dictyostelium discoideum   4 4
No Yes Dictyostelium purpureum   4 4
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 1
No Yes Micromonas sp. RCC299   1 1
No Yes Thecamonas trahens ATCC 50062   11 11
No Yes Bigelowiella natans CCMP2755 22   4 4
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   2 2
No Yes Pythium iwayamai DAOM BR242034 22   5 5
No Yes Pythium arrhenomanes ATCC 12531 22   4 4
No Yes Pythium ultimum v1.7-2   4 4
No Yes Pythium aphanidermatum DAOM BR444 22   4 4
No Yes Pythium irregulare DAOM BR486 22   4 4
No Yes Pythium vexans DAOM BR484 22   4 4
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phytophthora sojae 1.1   3 3
No Yes Phytophthora infestans T30-4   3 3
No Yes Phytophthora capsici   3 3
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Paramecium tetraurelia   1 1
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Naegleria gruberi   4 4
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   4 4
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 34 30
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 14 12
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 9 8
No Yes Ascaris suum Victoria/Ghent Pig roundworm 6 6
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 7 6
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 85 79
No Yes Homo sapiens (NCBI version) Human 39 37
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 21 19
No Yes Heliconius numata (Incomplete)   3 3
No Yes Loa loa v3.3 (Request) Eye worm 10 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 9 8
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 8 7
No Yes Homo sapiens 69_37 Human 23 21
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 22 20
No Yes Gorilla gorilla 69_3.1 Western gorilla 23 21
No Yes Pongo abelii 69_2 Sumatran orangutan 20 18
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 19 17
No Yes Macaca mulatta 69_1 Rhesus monkey 18 16
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 21 19
No Yes Otolemur garnettii 69_3 Small-eared galago 20 18
No Yes Microcebus murinus 69_1 Gray mouse lemur 20 17
No Yes Rattus norvegicus 69_3.4 Norway rat 18 17
No Yes Mus musculus 69_38 House mouse 21 19
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 18 16
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 19 17
No Yes Cavia porcellus 69_3 Domestic guinea pig 19 18
No Yes Oryctolagus cuniculus 69_2 Rabbit 21 19
No Yes Ochotona princeps 69 American pika 19 17
No Yes Tupaia belangeri 69 Northern tree shrew 17 14
No Yes Sus scrofa 69_10.2 Pig 20 18
No Yes Bos taurus 69_3.1 Cattle 20 19
No Yes Vicugna pacos 69_1 Alpaca 12 10
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 21 19
No Yes Mustela putorius furo 69_1.0 Domestic ferret 19 17
No Yes Ailuropoda melanoleuca 69_1 Giant panda 21 19
No Yes Canis familiaris 69_3.1 Dog 21 19
No Yes Felis catus 69 Domestic cat 16 14
No Yes Equus caballus 69_2 Horse 21 19
No Yes Myotis lucifugus 69_2.0 Little brown bat 21 19
No Yes Pteropus vampyrus 69_1 Large flying fox 20 18
No Yes Sorex araneus 69_1 European shrew 13 13
No Yes Erinaceus europaeus 69 Western European hedgehog 13 12
No Yes Procavia capensis 69_1 Cape rock hyrax 20 18
No Yes Loxodonta africana 69_3 African savanna elephant 21 19
No Yes Echinops telfairi 69 Small Madagascar hedgehog 17 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 17 15
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 13 11
No Yes Macropus eugenii 69_1.0 Tammar wallaby 20 17
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 20 18
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 19 17
No Yes Ornithorhynchus anatinus 69_5 Platypus 21 20
No Yes Petromyzon marinus 69_7.0 Sea lamprey 8 7
No Yes Meleagris gallopavo 69_2 Turkey 17 15
No Yes Gallus gallus 69_2 Chicken 18 16
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 23 21
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 17 15
No Yes Anolis carolinensis 69_2.0 Green anole 19 18
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 18 16
No Yes Latimeria chalumnae 69_1 Coelacanth 17 16
No Yes Gadus morhua 69_1 Atlantic cod 24 21
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 22 21
No Yes Takifugu rubripes 69_4 Torafugu 26 23
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 23 20
No Yes Oryzias latipes 69_1 Japanese medaka 21 18
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 24 22
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 25 22
No Yes Danio rerio 69_9 Zebrafish 25 23
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 7 7
No Yes Ciona intestinalis 69 Vase tunicate 9 9
No Yes Drosophila melanogaster 69_5 Fruit fly 10 9
No Yes Caenorhabditis elegans 69_215 Roundworm 7 6
No Yes NCBI 2017_08 genome   15193 13864
No Yes STRING v9.0.5 (STRING)   759 692
No Yes Uniprot 2018_03 genome   8028 7280
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   12 12
No Yes TargetDB (Targets)   22 20

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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