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  Home > Genomes > Erinaceus europaeus 69 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
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Erinaceus europaeus 69

Assignment details

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Erinaceus europaeus 69 has 185 significant domains in 40 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSEEUP00000000209   0.0000000013   32-93   Complement control module/SCR domain  
ENSEEUP00000000260   7.6e-21   186-250   Complement control module/SCR domain  
  0.0000000000000499   129-189   Complement control module/SCR domain  
  0.00000000513   65-123   Complement control module/SCR domain  
  0.00000328   2-67   Complement control module/SCR domain  
ENSEEUP00000000723   8.48e-17   392-450   Complement control module/SCR domain  
ENSEEUP00000001817   2.5e-16   79-147   Complement control module/SCR domain  
ENSEEUP00000002172   0.00000000000000153   125-186   Complement control module/SCR domain  
  0.000000000000216   1-74   Complement control module/SCR domain  
  0.0000889   64-98   Complement control module/SCR domain  
ENSEEUP00000002560   0.0000000000103   548-612   Complement control module/SCR domain  
  0.0000000834   604-660   Complement control module/SCR domain  
ENSEEUP00000004237   0.000000000000417   1-59   Complement control module/SCR domain  
  0.0000000000032   64-120   Complement control module/SCR domain  
ENSEEUP00000004338   0.0000000000000806   97-158   Complement control module/SCR domain  
  0.00000000000139   164-220   Complement control module/SCR domain  
  0.0000431   35-84   Complement control module/SCR domain  
ENSEEUP00000004814   0.00000000001   1982-2042   Complement control module/SCR domain  
ENSEEUP00000004912   0.000000000000459   359-429   Complement control module/SCR domain  
  0.0000000000236   301-362   Complement control module/SCR domain  
ENSEEUP00000005697   0.0000000000764   642-698   Complement control module/SCR domain  
ENSEEUP00000006343   0.0000000000347   1-62   Complement control module/SCR domain  
ENSEEUP00000006859   0.000000000667   742-800   Complement control module/SCR domain  
ENSEEUP00000007293   7.34e-20   1138-1200   Complement control module/SCR domain  
  0.000000000000459   1081-1141   Complement control module/SCR domain  
  0.000000000000537   626-683   Complement control module/SCR domain  
  0.000000000000537   688-743   Complement control module/SCR domain  
  0.00000000000498   904-963   Complement control module/SCR domain  
  0.00000000000537   1014-1075   Complement control module/SCR domain  
  0.0000000000057   143-205   Complement control module/SCR domain  
  0.0000000000183   804-859   Complement control module/SCR domain  
  0.00000000114   954-1018   Complement control module/SCR domain  
  0.00000000136   561-623   Complement control module/SCR domain  
  0.0000000017   267-328   Complement control module/SCR domain  
  0.00000000931   510-571   Complement control module/SCR domain  
  0.0000000223   392-449   Complement control module/SCR domain  
  0.0000000337   454-511   Complement control module/SCR domain  
  0.0000000708   864-913   Complement control module/SCR domain  
  0.00403   324-388   Complement control module/SCR domain  
  0.0058   752-798   Complement control module/SCR domain  
ENSEEUP00000007477   0.0000000000000351   718-775   Complement control module/SCR domain  
  0.00000000000283   846-905   Complement control module/SCR domain  
ENSEEUP00000007864   0.00000000000000639   116-178   Complement control module/SCR domain  
  0.0000000000389   261-314   Complement control module/SCR domain  
  0.0000000114   78-126   Complement control module/SCR domain  
ENSEEUP00000008094   5.67e-19   2154-2222   Complement control module/SCR domain  
  7.92e-18   2394-2462   Complement control module/SCR domain  
  3.64e-17   2211-2280   Complement control module/SCR domain  
  1.95e-16   2269-2342   Complement control module/SCR domain  
  7.15e-16   2570-2639   Complement control module/SCR domain  
  0.00000000000000236   2628-2685   Complement control module/SCR domain  
  0.000000000000025   175-243   Complement control module/SCR domain  
  0.0000000000000306   1561-1630   Complement control module/SCR domain  
  0.0000000000000334   866-930   Complement control module/SCR domain  
  0.0000000000000337   2447-2508   Complement control module/SCR domain  
  0.0000000000000542   2096-2158   Complement control module/SCR domain  
  0.000000000000057   2326-2388   Complement control module/SCR domain  
  0.000000000000181   1040-1104   Complement control module/SCR domain  
  0.000000000000361   1215-1278   Complement control module/SCR domain  
  0.00000000000058   1968-2029   Complement control module/SCR domain  
  0.000000000000648   1906-1974   Complement control module/SCR domain  
  0.000000000000985   2690-2747   Complement control module/SCR domain  
  0.0000000000012   350-406   Complement control module/SCR domain  
  0.0000000000031   1389-1447   Complement control module/SCR domain  
  0.00000000000612   693-751   Complement control module/SCR domain  
  0.0000000000389   7-67   Complement control module/SCR domain  
  0.0000000000513   1732-1792   Complement control module/SCR domain  
  0.00000000445   523-583   Complement control module/SCR domain  
ENSEEUP00000008119   0.0000000000000181   411-483   Complement control module/SCR domain  
  0.00000000000445   471-532   Complement control module/SCR domain  
  0.000000000195   181-240   Complement control module/SCR domain  
ENSEEUP00000008279   0.000000105   226-284   Complement control module/SCR domain  
ENSEEUP00000008483   3.61e-16   717-774   Complement control module/SCR domain  
ENSEEUP00000009038   0.000000000000183   532-593   Complement control module/SCR domain  
  0.00000000000354   599-658   Complement control module/SCR domain  
  0.000000038   293-358   Complement control module/SCR domain  
ENSEEUP00000009227   0.00000000917   1-61   Complement control module/SCR domain  
ENSEEUP00000009372   6.21e-19   2815-2883   Complement control module/SCR domain  
  3.89e-17   3054-3122   Complement control module/SCR domain  
  7.56e-16   2872-2929   Complement control module/SCR domain  
  0.00000000000000208   485-556   Complement control module/SCR domain  
  0.00000000000000486   2222-2291   Complement control module/SCR domain  
  0.00000000000000486   3108-3168   Complement control module/SCR domain  
  0.00000000000000737   3350-3418   Complement control module/SCR domain  
  0.0000000000000208   2567-2640   Complement control module/SCR domain  
  0.0000000000000378   1009-1069   Complement control module/SCR domain  
  0.0000000000000445   1527-1591   Complement control module/SCR domain  
  0.0000000000000499   2629-2690   Complement control module/SCR domain  
  0.0000000000001   1699-1764   Complement control module/SCR domain  
  0.000000000000139   663-722   Complement control module/SCR domain  
  0.000000000000243   3230-3287   Complement control module/SCR domain  
  0.000000000000292   1876-1942   Complement control module/SCR domain  
  0.00000000000202   177-237   Complement control module/SCR domain  
  0.00000000000236   3409-3467   Complement control module/SCR domain  
  0.00000000000243   1182-1239   Complement control module/SCR domain  
  0.0000000000702   2393-2456   Complement control module/SCR domain  
  0.00000195   2992-3038   Complement control module/SCR domain  
  0.00000931   2050-2084   Complement control module/SCR domain  
ENSEEUP00000010373   0.000000000000153   78-141   Complement control module/SCR domain  
  0.000000000153   23-81   Complement control module/SCR domain  
  0.00000584   130-165   Complement control module/SCR domain  
ENSEEUP00000010570   2.08e-16   255-320   Complement control module/SCR domain  
  0.00000000000000124   424-496   Complement control module/SCR domain  
  0.00000000000000133   199-271   Complement control module/SCR domain  
  0.00000000000000513   542-607   Complement control module/SCR domain  
  0.0000000000000172   480-546   Complement control module/SCR domain  
  0.000000000000057   674-739   Complement control module/SCR domain  
  0.000000000000612   619-683   Complement control module/SCR domain  
  0.00000000000222   363-430   Complement control module/SCR domain  
ENSEEUP00000010636   0.000000000000057   266-332   Complement control module/SCR domain  
  0.000000000000612   211-276   Complement control module/SCR domain  
ENSEEUP00000010701   0.0000000000306   3141-3199   Complement control module/SCR domain  
ENSEEUP00000010726   0.00000000236   1293-1370   Complement control module/SCR domain  
  0.0000208   1236-1303   Complement control module/SCR domain  
  0.0000347   1365-1422   Complement control module/SCR domain  
ENSEEUP00000010859   4.99e-18   3092-3163   Complement control module/SCR domain  
  3.37e-17   2793-2860   Complement control module/SCR domain  
  7.69e-17   3152-3221   Complement control module/SCR domain  
  5.7e-16   3272-3340   Complement control module/SCR domain  
  8.62e-16   3033-3103   Complement control module/SCR domain  
  0.00000000000000153   383-452   Complement control module/SCR domain  
  0.0000000000000216   179-240   Complement control module/SCR domain  
  0.0000000000000432   2853-2920   Complement control module/SCR domain  
  0.0000000000000783   2529-2596   Complement control module/SCR domain  
  0.000000000000082   2909-2969   Complement control module/SCR domain  
  0.000000000000222   3204-3266   Complement control module/SCR domain  
  0.000000000000229   1250-1313   Complement control module/SCR domain  
  0.000000000000378   1425-1488   Complement control module/SCR domain  
  0.000000000000783   1598-1665   Complement control module/SCR domain  
  0.00000000000334   910-967   Complement control module/SCR domain  
  0.00000000000486   732-800   Complement control module/SCR domain  
  0.00000000000667   3331-3390   Complement control module/SCR domain  
  0.00000000000723   1775-1838   Complement control module/SCR domain  
  0.000000000027   1080-1142   Complement control module/SCR domain  
  0.0000000000337   2292-2356   Complement control module/SCR domain  
  0.0000000000806   564-623   Complement control module/SCR domain  
  0.00000653   2587-2645   Complement control module/SCR domain  
ENSEEUP00000012411   0.00000000000292   177-247   Complement control module/SCR domain  
  0.0000000000334   237-296   Complement control module/SCR domain  
ENSEEUP00000012763   0.00000000167   1242-1312   Complement control module/SCR domain  
  0.000347   1304-1338   Complement control module/SCR domain  
  0.000375   1106-1145   Complement control module/SCR domain  
  0.00547   1218-1246   Complement control module/SCR domain  
ENSEEUP00000012764   0.0000000000000236   228-286   Complement control module/SCR domain  
  0.0000000778   23-83   Complement control module/SCR domain  
ENSEEUP00000012974   1.67e-17   1669-1738   Complement control module/SCR domain  
  3.75e-17   1609-1680   Complement control module/SCR domain  
  4.45e-17   2570-2638   Complement control module/SCR domain  
  1.17e-16   1785-1853   Complement control module/SCR domain  
  0.00000000000000109   1727-1794   Complement control module/SCR domain  
  0.00000000000000526   2378-2444   Complement control module/SCR domain  
  0.00000000000000526   2466-2522   Complement control module/SCR domain  
  0.00000000000000612   1506-1568   Complement control module/SCR domain  
  0.00000000000000931   2513-2574   Complement control module/SCR domain  
  0.0000000000000783   3212-3271   Complement control module/SCR domain  
  0.000000000000115   255-318   Complement control module/SCR domain  
  0.000000000000125   1968-2021   Complement control module/SCR domain  
  0.000000000000751   1452-1517   Complement control module/SCR domain  
  0.00000000000167   199-270   Complement control module/SCR domain  
  0.00000000000403   3094-3150   Complement control module/SCR domain  
  0.00000000000903   1906-1979   Complement control module/SCR domain  
  0.0000000000103   1842-1910   Complement control module/SCR domain  
  0.0000000001   2336-2383   Complement control module/SCR domain  
  0.0000000236   2622-2676   Complement control module/SCR domain  
  0.000000306   2973-3026   Complement control module/SCR domain  
  0.000032   2944-2984   Complement control module/SCR domain  
  0.000104   550-603   Complement control module/SCR domain  
ENSEEUP00000013140   3.54e-19   453-530   Complement control module/SCR domain  
  5.24e-19   581-648   Complement control module/SCR domain  
  0.00000000000132   396-456   Complement control module/SCR domain  
  0.00000000000328   205-261   Complement control module/SCR domain  
  0.0000000000106   273-327   Complement control module/SCR domain  
  0.000000000315   522-578   Complement control module/SCR domain  
  0.00000000183   335-381   Complement control module/SCR domain  
  0.0000000486   154-214   Complement control module/SCR domain  
ENSEEUP00000013368   0.000000000000324   168-227   Complement control module/SCR domain  
  0.00000025   110-167   Complement control module/SCR domain  
ENSEEUP00000013434   0.0000000000000208   190-252   Complement control module/SCR domain  
  0.0000000000000783   129-198   Complement control module/SCR domain  
  0.0000000017   2-55   Complement control module/SCR domain  
  0.000000503   97-138   Complement control module/SCR domain  
ENSEEUP00000013590   0.00000000000000175   420-485   Complement control module/SCR domain  
  0.00000000000059   479-541   Complement control module/SCR domain  
  0.00000000000122   546-606   Complement control module/SCR domain  
  0.0000000000836   242-306   Complement control module/SCR domain  
ENSEEUP00000013655   1.7e-17   43-108   Complement control module/SCR domain  
  0.000000000000229   100-174   Complement control module/SCR domain  
  0.00000000000181   163-221   Complement control module/SCR domain  
  0.0000000208   1-53   Complement control module/SCR domain  
ENSEEUP00000013835   0.00000000000361   293-359   Complement control module/SCR domain  
ENSEEUP00000014365   0.000000000195   810-869   Complement control module/SCR domain  
 
Weak hits:
ENSEEUP00000005091   0.0183   306-347   Complement control module/SCR domain  
ENSEEUP00000005134   0.000217   185-232   Complement control module/SCR domain  
ENSEEUP00000008214   0.00864   221-257   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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