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  Home > Genomes > Pongo abelii 69_2 > Intermediate filament protein, coiled coil region domains


Intermediate filament protein, coiled coil region superfamily domain assignments
in
Pongo abelii 69_2

Assignment details

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Pongo abelii 69_2 has 153 significant domains in 75 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000000845   4.36e-18   306-382   Intermediate filament protein, coiled coil region  
  0.0000000628   30-62   Intermediate filament protein, coiled coil region  
ENSPPYP00000002084   0.00000000000012   182-250   Intermediate filament protein, coiled coil region  
ENSPPYP00000003046   4.53e-25   324-402   Intermediate filament protein, coiled coil region  
  0.0000000000134   92-128   Intermediate filament protein, coiled coil region  
ENSPPYP00000004775   0.00000000000068   457-525   Intermediate filament protein, coiled coil region  
  0.00162   77-107   Intermediate filament protein, coiled coil region  
ENSPPYP00000005117   3.31e-23   324-402   Intermediate filament protein, coiled coil region  
  0.000000000000167   95-131   Intermediate filament protein, coiled coil region  
ENSPPYP00000005180   2.09e-20   315-389   Intermediate filament protein, coiled coil region  
  0.0000000162   81-116   Intermediate filament protein, coiled coil region  
  0.000434   118-193   Intermediate filament protein, coiled coil region  
ENSPPYP00000005181   2.44e-23   321-398   Intermediate filament protein, coiled coil region  
  0.0000000000262   90-124   Intermediate filament protein, coiled coil region  
  0.0000429   136-199   Intermediate filament protein, coiled coil region  
ENSPPYP00000005182   1.73e-16   254-328   Intermediate filament protein, coiled coil region  
  0.0000000000178   25-59   Intermediate filament protein, coiled coil region  
ENSPPYP00000005183   1.2e-20   340-417   Intermediate filament protein, coiled coil region  
  0.0000000000319   110-144   Intermediate filament protein, coiled coil region  
  0.0023   148-218   Intermediate filament protein, coiled coil region  
ENSPPYP00000005185   9.59e-22   351-428   Intermediate filament protein, coiled coil region  
  0.0000000000251   121-155   Intermediate filament protein, coiled coil region  
  0.000628   158-229   Intermediate filament protein, coiled coil region  
ENSPPYP00000005186   3.14e-22   349-426   Intermediate filament protein, coiled coil region  
  0.0000000000785   119-153   Intermediate filament protein, coiled coil region  
  0.000012   156-227   Intermediate filament protein, coiled coil region  
ENSPPYP00000005187   1.74e-24   380-457   Intermediate filament protein, coiled coil region  
  0.0000000000178   148-182   Intermediate filament protein, coiled coil region  
  0.000000034   187-258   Intermediate filament protein, coiled coil region  
ENSPPYP00000005188   1.13e-23   394-471   Intermediate filament protein, coiled coil region  
  0.0000000000162   162-196   Intermediate filament protein, coiled coil region  
  0.00000000146   201-273   Intermediate filament protein, coiled coil region  
ENSPPYP00000005189   3.31e-24   399-476   Intermediate filament protein, coiled coil region  
  0.0000000000445   167-201   Intermediate filament protein, coiled coil region  
  0.000000012   206-277   Intermediate filament protein, coiled coil region  
ENSPPYP00000005191   1.67e-21   361-437   Intermediate filament protein, coiled coil region  
  0.0000000000277   129-163   Intermediate filament protein, coiled coil region  
  0.0000000398   170-239   Intermediate filament protein, coiled coil region  
ENSPPYP00000005192   5.58e-23   370-448   Intermediate filament protein, coiled coil region  
  0.0000000000167   139-173   Intermediate filament protein, coiled coil region  
  0.000000141   180-248   Intermediate filament protein, coiled coil region  
ENSPPYP00000005193   0.0000000000225   124-158   Intermediate filament protein, coiled coil region  
  0.0000012   165-234   Intermediate filament protein, coiled coil region  
ENSPPYP00000005194   1.29e-22   409-486   Intermediate filament protein, coiled coil region  
  0.0000000000392   177-211   Intermediate filament protein, coiled coil region  
  0.00000837   222-287   Intermediate filament protein, coiled coil region  
ENSPPYP00000005195   2.62e-22   293-370   Intermediate filament protein, coiled coil region  
  0.0000204   119-175   Intermediate filament protein, coiled coil region  
ENSPPYP00000005196   5.58e-19   400-477   Intermediate filament protein, coiled coil region  
  0.00000000012   168-202   Intermediate filament protein, coiled coil region  
  0.00035   213-278   Intermediate filament protein, coiled coil region  
ENSPPYP00000005197   1.05e-23   414-491   Intermediate filament protein, coiled coil region  
  0.0000000000146   182-216   Intermediate filament protein, coiled coil region  
  0.00000575   226-289   Intermediate filament protein, coiled coil region  
ENSPPYP00000005198   1.24e-23   421-498   Intermediate filament protein, coiled coil region  
  0.0000000000167   187-221   Intermediate filament protein, coiled coil region  
  0.00000262   233-299   Intermediate filament protein, coiled coil region  
ENSPPYP00000005199   2.62e-22   442-519   Intermediate filament protein, coiled coil region  
  0.0000000000523   210-244   Intermediate filament protein, coiled coil region  
  0.00000293   250-320   Intermediate filament protein, coiled coil region  
ENSPPYP00000005200   2.09e-20   359-430   Intermediate filament protein, coiled coil region  
  0.0000000000183   141-175   Intermediate filament protein, coiled coil region  
  0.0000000523   183-253   Intermediate filament protein, coiled coil region  
ENSPPYP00000005201   3.14e-22   336-413   Intermediate filament protein, coiled coil region  
  0.0000000000889   104-138   Intermediate filament protein, coiled coil region  
  0.0000732   147-218   Intermediate filament protein, coiled coil region  
ENSPPYP00000005202   9.94e-26   280-357   Intermediate filament protein, coiled coil region  
  0.00000000000497   50-84   Intermediate filament protein, coiled coil region  
  0.000000146   86-157   Intermediate filament protein, coiled coil region  
ENSPPYP00000005204   2.27e-22   308-385   Intermediate filament protein, coiled coil region  
  0.000000000785   78-113   Intermediate filament protein, coiled coil region  
ENSPPYP00000005891   2.79e-24   122-199   Intermediate filament protein, coiled coil region  
ENSPPYP00000007723   0.000000000000017   244-317   Intermediate filament protein, coiled coil region  
  0.0000282   10-43   Intermediate filament protein, coiled coil region  
ENSPPYP00000009147   1.17e-24   229-307   Intermediate filament protein, coiled coil region  
ENSPPYP00000009349   8.37e-24   294-372   Intermediate filament protein, coiled coil region  
  0.00000000000033   68-104   Intermediate filament protein, coiled coil region  
ENSPPYP00000009461   3.14e-26   346-424   Intermediate filament protein, coiled coil region  
  0.00000000418   117-150   Intermediate filament protein, coiled coil region  
ENSPPYP00000009462   2.44e-24   308-386   Intermediate filament protein, coiled coil region  
  0.0000000022   78-112   Intermediate filament protein, coiled coil region  
ENSPPYP00000009463   2.62e-25   334-412   Intermediate filament protein, coiled coil region  
  0.00000000209   103-137   Intermediate filament protein, coiled coil region  
ENSPPYP00000009464   8.02e-25   271-349   Intermediate filament protein, coiled coil region  
  0.0000000012   41-75   Intermediate filament protein, coiled coil region  
ENSPPYP00000009465   1.27e-22   325-402   Intermediate filament protein, coiled coil region  
  0.000000000246   95-129   Intermediate filament protein, coiled coil region  
ENSPPYP00000009466   2.96e-22   334-405   Intermediate filament protein, coiled coil region  
  0.000000105   94-129   Intermediate filament protein, coiled coil region  
ENSPPYP00000009467   2.44e-22   343-413   Intermediate filament protein, coiled coil region  
  0.00000000152   102-135   Intermediate filament protein, coiled coil region  
ENSPPYP00000009469   1.71e-22   343-413   Intermediate filament protein, coiled coil region  
  0.00000000183   102-135   Intermediate filament protein, coiled coil region  
ENSPPYP00000009471   3.31e-22   296-367   Intermediate filament protein, coiled coil region  
  0.0000000209   56-88   Intermediate filament protein, coiled coil region  
ENSPPYP00000009472   2.44e-22   295-366   Intermediate filament protein, coiled coil region  
  0.0000000199   55-87   Intermediate filament protein, coiled coil region  
ENSPPYP00000009473   5.41e-22   294-365   Intermediate filament protein, coiled coil region  
  0.0000000398   54-86   Intermediate filament protein, coiled coil region  
ENSPPYP00000009491   1.92e-21   327-399   Intermediate filament protein, coiled coil region  
  0.00000000204   87-122   Intermediate filament protein, coiled coil region  
ENSPPYP00000009492   1.69e-19   324-401   Intermediate filament protein, coiled coil region  
  0.0000000272   94-129   Intermediate filament protein, coiled coil region  
ENSPPYP00000009493   1.74e-23   299-377   Intermediate filament protein, coiled coil region  
  0.000837   79-103   Intermediate filament protein, coiled coil region  
ENSPPYP00000009495   4.36e-24   367-445   Intermediate filament protein, coiled coil region  
  0.00000000188   134-169   Intermediate filament protein, coiled coil region  
ENSPPYP00000009496   9.24e-21   318-396   Intermediate filament protein, coiled coil region  
  0.0000000131   84-118   Intermediate filament protein, coiled coil region  
ENSPPYP00000009497   1.17e-20   316-394   Intermediate filament protein, coiled coil region  
  0.00000000785   82-116   Intermediate filament protein, coiled coil region  
ENSPPYP00000009498   9.94e-21   315-393   Intermediate filament protein, coiled coil region  
  0.0000000214   81-115   Intermediate filament protein, coiled coil region  
ENSPPYP00000009499   2.79e-20   311-389   Intermediate filament protein, coiled coil region  
  0.0000000068   77-111   Intermediate filament protein, coiled coil region  
ENSPPYP00000009500   6.1e-23   367-445   Intermediate filament protein, coiled coil region  
  0.00000000199   132-167   Intermediate filament protein, coiled coil region  
ENSPPYP00000009501   4.88e-20   67-144   Intermediate filament protein, coiled coil region  
ENSPPYP00000009902   1.27e-22   284-361   Intermediate filament protein, coiled coil region  
  0.000000033   83-116   Intermediate filament protein, coiled coil region  
ENSPPYP00000010034   1.92e-24   250-328   Intermediate filament protein, coiled coil region  
  0.00000000178   65-99   Intermediate filament protein, coiled coil region  
ENSPPYP00000010059   6.1e-22   386-464   Intermediate filament protein, coiled coil region  
  0.000000246   155-190   Intermediate filament protein, coiled coil region  
ENSPPYP00000010060   8.55e-26   346-424   Intermediate filament protein, coiled coil region  
  0.00000000418   117-150   Intermediate filament protein, coiled coil region  
  0.0246   191-229   Intermediate filament protein, coiled coil region  
ENSPPYP00000010064   1.38e-25   224-302   Intermediate filament protein, coiled coil region  
ENSPPYP00000012305   0.000000000000785   149-223   Intermediate filament protein, coiled coil region  
  0.000301   2-34   Intermediate filament protein, coiled coil region  
ENSPPYP00000013041   1.92e-23   330-407   Intermediate filament protein, coiled coil region  
  0.000000000628   95-128   Intermediate filament protein, coiled coil region  
ENSPPYP00000014193   1.92e-19   281-358   Intermediate filament protein, coiled coil region  
  0.0000214   67-100   Intermediate filament protein, coiled coil region  
ENSPPYP00000014736   0.00000000000000576   57-128   Intermediate filament protein, coiled coil region  
ENSPPYP00000015787   0.00000000000000314   372-442   Intermediate filament protein, coiled coil region  
ENSPPYP00000015941   0.0000000000837   30-65   Intermediate filament protein, coiled coil region  
ENSPPYP00000016203   0.0000000000785   35-69   Intermediate filament protein, coiled coil region  
  0.00000000942   261-330   Intermediate filament protein, coiled coil region  
  0.00000356   71-145   Intermediate filament protein, coiled coil region  
ENSPPYP00000017583   9.07e-18   283-358   Intermediate filament protein, coiled coil region  
  0.0000000309   58-94   Intermediate filament protein, coiled coil region  
ENSPPYP00000017590   3.14e-17   320-387   Intermediate filament protein, coiled coil region  
  0.00000000942   31-64   Intermediate filament protein, coiled coil region  
ENSPPYP00000020674   2.44e-25   329-407   Intermediate filament protein, coiled coil region  
  0.00000000000167   99-135   Intermediate filament protein, coiled coil region  
ENSPPYP00000020675   1.74e-23   318-395   Intermediate filament protein, coiled coil region  
  0.0000000000204   89-122   Intermediate filament protein, coiled coil region  
ENSPPYP00000022691   1.48e-22   308-380   Intermediate filament protein, coiled coil region  
  0.00000136   73-106   Intermediate filament protein, coiled coil region  
ENSPPYP00000022900   0.000000000000106   234-309   Intermediate filament protein, coiled coil region  
  0.00000732   11-38   Intermediate filament protein, coiled coil region  
  0.0000105   53-111   Intermediate filament protein, coiled coil region  
ENSPPYP00000022983   1.52e-20   291-367   Intermediate filament protein, coiled coil region  
  0.00000000628   78-112   Intermediate filament protein, coiled coil region  
ENSPPYP00000023649   1.1e-26   107-185   Intermediate filament protein, coiled coil region  
ENSPPYP00000023692   0.00000000506   241-312   Intermediate filament protein, coiled coil region  
  0.0000889   7-41   Intermediate filament protein, coiled coil region  
ENSPPYP00000024067   7.32e-26   71-149   Intermediate filament protein, coiled coil region  
ENSPPYP00000024280   1.22e-18   321-397   Intermediate filament protein, coiled coil region  
  0.0000000209   45-78   Intermediate filament protein, coiled coil region  
 
Weak hits:
ENSPPYP00000004539   0.00889   19-74   Intermediate filament protein, coiled coil region  
ENSPPYP00000007764   0.0243   4-63   Intermediate filament protein, coiled coil region  
ENSPPYP00000020066   0.034   178-229   Intermediate filament protein, coiled coil region  
ENSPPYP00000023884   0.000654   397-460   Intermediate filament protein, coiled coil region  

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Select to display   Genome       Domains   Proteins
No Yes ALL   91545 91545
No Yes Homo sapiens 76_38 Human 312 169
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 180 85
No Yes Gorilla gorilla 76_3.1 Western gorilla 291 147
No Yes Pongo abelii 76_2 Sumatran orangutan 158 78
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 152 75
No Yes Papio anubis 76 Olive baboon 210 99
No Yes Macaca mulatta 76_1 Rhesus monkey 284 161
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 492 246
No Yes Otolemur garnettii 76_3 Small-eared galago 182 92
No Yes Microcebus murinus 76_1 Gray mouse lemur 130 67
No Yes Rattus norvegicus 76_5.0 Norway rat 163 82
No Yes Mus musculus 76_38 House mouse 188 94
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 117 63
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 129 61
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 139 71
No Yes Cavia porcellus 76_3 Domestic guinea pig 71 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 144 69
No Yes Ochotona princeps 76 American pika 119 61
No Yes Tupaia belangeri 76 Northern tree shrew 108 57
No Yes Sus scrofa 76_10.2 Pig 138 69
No Yes Bos taurus 76_3.1 Cattle 177 82
No Yes Ovis aries 76_3.1 Sheep 163 77
No Yes Vicugna pacos 76_1 Alpaca 58 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 84 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 139 69
No Yes Ailuropoda melanoleuca 76_1 Giant panda 172 87
No Yes Canis familiaris 76_3.1 Dog 206 107
No Yes Felis catus 76_6.2 Domestic cat 161 79
No Yes Equus caballus 76_2 Horse 190 92
No Yes Myotis lucifugus 76_2.0 Little brown bat 168 86
No Yes Pteropus vampyrus 76_1 Large flying fox 132 69
No Yes Sorex araneus 76_1 European shrew 75 46
No Yes Erinaceus europaeus 76 Western European hedgehog 115 60
No Yes Procavia capensis 76_1 Cape rock hyrax 109 59
No Yes Loxodonta africana 76_3 African savanna elephant 188 90
No Yes Echinops telfairi 76 Small Madagascar hedgehog 103 57
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 177 77
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 60 39
No Yes Macropus eugenii 76_1.0 Tammar wallaby 118 66
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 160 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 121 63
No Yes Ornithorhynchus anatinus 76_5 Platypus 151 82
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 56 36
No Yes Meleagris gallopavo 76_2 Turkey 97 50
No Yes Gallus gallus 76_4 Chicken 73 39
No Yes Anas platyrhynchos 76_1.0 Mallard 56 34
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 53 37
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 88 48
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 69 43
No Yes Anolis carolinensis 76_2.0 Green anole 102 54
No Yes Xenopus laevis African clawed frog 367 182
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 121 64
No Yes Latimeria chalumnae 76_1 Coelacanth 82 41
No Yes Lepisosteus oculatus 76 Spotted gar 101 50
No Yes Gadus morhua 76_1 Atlantic cod 113 64
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 103 58
No Yes Takifugu rubripes 76_4 Torafugu 397 197
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 153 79
No Yes Oryzias latipes 76_1 Japanese medaka 128 67
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 88 49
No Yes Poecilia formosa 76 Amazon molly 105 48
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 116 59
No Yes Astyanax mexicanus 76 Mexican tetra 115 58
No Yes Danio rerio 76_9 Zebrafish 200 107
No Yes Oikopleura dioica   8 4
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 19 11
No Yes Ciona intestinalis 76 Vase tunicate 12 7
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 5 4
No Yes Adineta vaga   63 35
No Yes Octopus bimaculoides 280   17 12
No Yes Crassostrea gigas 22 Pacific oyster 7 4
No Yes Lottia gigantea Owl limpet 11 6
No Yes Helobdella robusta   21 12
No Yes Capitella sp. I   3 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 2 1
No Yes Bombyx mori Domestic silkworm 2 2
No Yes Nasonia vitripennis Jewel wasp 2 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 4 4
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 1
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1
No Yes Atta cephalotes v1.1   2 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 2
No Yes Lucilia cuprina Australian sheep blowfly 4 2
No Yes Drosophila grimshawi 1.3   4 2
No Yes Drosophila willistoni 1.3   4 2
No Yes Drosophila pseudoobscura 2.13   4 2
No Yes Drosophila persimilis 1.3   4 3
No Yes Drosophila suzukii   4 2
No Yes Drosophila yakuba 1.3   4 2
No Yes Drosophila simulans 1.3   2 1
No Yes Drosophila sechellia 1.3   4 2
No Yes Drosophila melanogaster 76_5 Fruit fly 10 5
No Yes Drosophila erecta 1.3   4 2
No Yes Drosophila ananassae 1.3   4 2
No Yes Drosophila virilis 1.2   4 2
No Yes Drosophila mojavensis 1.3   4 2
No Yes Megaselia scalaris 22   2 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 4 2
No Yes Anopheles darlingi 22 American malaria mosquito 4 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 4 2
No Yes Tribolium castaneum 3.0 Red flour beetle 2 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 1
No Yes Acyrthosiphon pisum Pea aphid 5 3
No Yes Rhodnius prolixus 22   2 1
No Yes Daphnia pulex Common water flea 3 2
No Yes Strigamia maritima 22   2 1
No Yes Sarcoptes scabiei   2 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 1
No Yes Pristionchus pacificus   11 7
No Yes Meloidogyne incognita Southern root-knot nematode 10 5
No Yes Meloidogyne hapla   3 2
No Yes Onchocerca volvulus 22   10 5
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 14 10
No Yes Caenorhabditis japonica   17 10
No Yes Caenorhabditis brenneri   24 13
No Yes Caenorhabditis remanei   24 13
No Yes Caenorhabditis elegans 76_235 Roundworm 48 25
No Yes Caenorhabditis briggsae 2   25 14
No Yes Trichinella spiralis 22   8 5
No Yes Hymenolepis microstoma   7 4
No Yes Echinococcus multilocularis   6 4
No Yes Echinococcus granulosus   6 4
No Yes Taenia solium Pork tapeworm 6 4
No Yes Schistosoma mansoni   6 4
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   4 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 1
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   4 2
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Amborella trichopoda 22   2 2
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Trichomonas vaginalis   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 238 119
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 4 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 4 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 14 10
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 34 18
No Yes Homo sapiens 75_37 (old version GRC) Human 313 169
No Yes Homo sapiens (NCBI version) Human 185 86
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 157 72
No Yes Loa loa v3.3 (Request) Eye worm 11 6
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 8 7
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 7 5
No Yes Homo sapiens 69_37 Human 184 85
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 152 72
No Yes Gorilla gorilla 69_3.1 Western gorilla 208 106
No Yes Pongo abelii 69_2 Sumatran orangutan 153 75
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 136 66
No Yes Macaca mulatta 69_1 Rhesus monkey 220 122
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 154
No Yes Otolemur garnettii 69_3 Small-eared galago 179 91
No Yes Microcebus murinus 69_1 Gray mouse lemur 130 67
No Yes Rattus norvegicus 69_3.4 Norway rat 145 73
No Yes Mus musculus 69_38 House mouse 159 74
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 117 63
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 126 60
No Yes Cavia porcellus 69_3 Domestic guinea pig 69 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 122 60
No Yes Ochotona princeps 69 American pika 119 61
No Yes Tupaia belangeri 69 Northern tree shrew 108 57
No Yes Sus scrofa 69_10.2 Pig 131 64
No Yes Bos taurus 69_3.1 Cattle 166 77
No Yes Vicugna pacos 69_1 Alpaca 58 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 84 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 139 69
No Yes Ailuropoda melanoleuca 69_1 Giant panda 153 77
No Yes Canis familiaris 69_3.1 Dog 149 76
No Yes Felis catus 69 Domestic cat 116 63
No Yes Equus caballus 69_2 Horse 165 81
No Yes Myotis lucifugus 69_2.0 Little brown bat 167 85
No Yes Pteropus vampyrus 69_1 Large flying fox 132 69
No Yes Sorex araneus 69_1 European shrew 75 46
No Yes Erinaceus europaeus 69 Western European hedgehog 115 60
No Yes Procavia capensis 69_1 Cape rock hyrax 109 59
No Yes Loxodonta africana 69_3 African savanna elephant 123 60
No Yes Echinops telfairi 69 Small Madagascar hedgehog 103 57
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 85 53
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 60 39
No Yes Macropus eugenii 69_1.0 Tammar wallaby 118 66
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 141 69
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 116 60
No Yes Ornithorhynchus anatinus 69_5 Platypus 125 70
No Yes Petromyzon marinus 69_7.0 Sea lamprey 53 33
No Yes Meleagris gallopavo 69_2 Turkey 56 32
No Yes Gallus gallus 69_2 Chicken 62 35
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 49 34
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 60 39
No Yes Anolis carolinensis 69_2.0 Green anole 82 44
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 96 50
No Yes Latimeria chalumnae 69_1 Coelacanth 77 39
No Yes Gadus morhua 69_1 Atlantic cod 89 52
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 90 51
No Yes Takifugu rubripes 69_4 Torafugu 90 46
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 85 44
No Yes Oryzias latipes 69_1 Japanese medaka 88 48
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 88 49
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 98 50
No Yes Danio rerio 69_9 Zebrafish 128 65
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 12 6
No Yes Ciona intestinalis 69 Vase tunicate 12 7
No Yes Drosophila melanogaster 69_5 Fruit fly 4 2
No Yes Caenorhabditis elegans 69_215 Roundworm 21 11
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   37582 19325
No Yes Protozoadb 2010_08 (Protozoadb)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3252 1692
No Yes Uniprot 2018_03 genome   24274 12807
No Yes Global Ocean Sampling Expedition (GOS)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   31 31
No Yes TargetDB (Targets)   100 54

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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