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  Home > Genomes > TargetDB > Intermediate filament protein, coiled coil region domains


Intermediate filament protein, coiled coil region superfamily domain assignments
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TargetDB

Assignment details

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TargetDB (Targets) has 100 significant domains in 54 proteins.

     

Sequence ID   Evalue   Region   Family  
CAA50178   0.0000000000000146   330-401   Intermediate filament protein, coiled coil region  
  0.000000000889   49-84   Intermediate filament protein, coiled coil region  
CAA50179   0.0000000000034   353-420   Intermediate filament protein, coiled coil region  
  0.00000000267   70-104   Intermediate filament protein, coiled coil region  
CAA50180   0.000000022   32-66   Intermediate filament protein, coiled coil region  
  0.0000863   312-378   Intermediate filament protein, coiled coil region  
CAA50181   0.000000000000174   335-405   Intermediate filament protein, coiled coil region  
  0.000000000105   50-84   Intermediate filament protein, coiled coil region  
CAA50182   6.1e-16   350-421   Intermediate filament protein, coiled coil region  
  0.0000000000251   68-103   Intermediate filament protein, coiled coil region  
CAA50184   0.00000000889   676-710   Intermediate filament protein, coiled coil region  
  0.000159   960-1020   Intermediate filament protein, coiled coil region  
DY3.2   0.00000000000855   323-386   Intermediate filament protein, coiled coil region  
  0.000000023   44-78   Intermediate filament protein, coiled coil region  
F10C1.2A   0.0000000000000146   330-401   Intermediate filament protein, coiled coil region  
  0.000000000889   49-84   Intermediate filament protein, coiled coil region  
F10C1.2B   0.0000000000000159   361-432   Intermediate filament protein, coiled coil region  
  0.000000000942   80-115   Intermediate filament protein, coiled coil region  
F10C1.7A   0.0000000000075   316-387   Intermediate filament protein, coiled coil region  
  0.000000126   38-73   Intermediate filament protein, coiled coil region  
F25E2.4   0.00000000126   54-87   Intermediate filament protein, coiled coil region  
  0.0000767   334-402   Intermediate filament protein, coiled coil region  
GO.43903   7.32e-20   67-144   Intermediate filament protein, coiled coil region  
HR4703   2.44e-23   321-398   Intermediate filament protein, coiled coil region  
  0.000000000068   90-124   Intermediate filament protein, coiled coil region  
  0.0000732   136-199   Intermediate filament protein, coiled coil region  
HR4755   2.27e-22   308-385   Intermediate filament protein, coiled coil region  
  0.000000000785   78-113   Intermediate filament protein, coiled coil region  
HR4755B   0.00000000011   10-45   Intermediate filament protein, coiled coil region  
HR4755C   4.88e-24   6-83   Intermediate filament protein, coiled coil region  
HR4755D   5.41e-24   5-82   Intermediate filament protein, coiled coil region  
HR4796   1.43e-25   328-406   Intermediate filament protein, coiled coil region  
  0.0000000000000115   101-138   Intermediate filament protein, coiled coil region  
HR5546   3.14e-17   320-387   Intermediate filament protein, coiled coil region  
  0.00000000942   31-64   Intermediate filament protein, coiled coil region  
HR5546B   6.8e-19   9-85   Intermediate filament protein, coiled coil region  
HR6421   1.15e-25   320-397   Intermediate filament protein, coiled coil region  
  0.00000000000575   90-124   Intermediate filament protein, coiled coil region  
  0.000000178   126-197   Intermediate filament protein, coiled coil region  
HR6421A   2.44e-27   6-83   Intermediate filament protein, coiled coil region  
HR6421C   1.92e-27   6-83   Intermediate filament protein, coiled coil region  
HR6421D   0.00000000309   6-77   Intermediate filament protein, coiled coil region  
HR6445   3.66e-26   312-390   Intermediate filament protein, coiled coil region  
  0.00000000293   82-116   Intermediate filament protein, coiled coil region  
HR6445A   9.07e-28   5-83   Intermediate filament protein, coiled coil region  
HR6445B   7.67e-28   6-84   Intermediate filament protein, coiled coil region  
HR6773   3.31e-24   399-476   Intermediate filament protein, coiled coil region  
  0.0000000000445   167-201   Intermediate filament protein, coiled coil region  
  0.000000012   206-277   Intermediate filament protein, coiled coil region  
NYSGRC-105990539   1.74e-23   318-395   Intermediate filament protein, coiled coil region  
  0.0000000000204   89-122   Intermediate filament protein, coiled coil region  
NYSGRC-109255249   7.67e-22   442-519   Intermediate filament protein, coiled coil region  
  0.00000000023   210-244   Intermediate filament protein, coiled coil region  
  0.00000324   250-320   Intermediate filament protein, coiled coil region  
NYSGRC-125490370   1.55e-21   327-399   Intermediate filament protein, coiled coil region  
  0.00000000256   87-122   Intermediate filament protein, coiled coil region  
NYSGRC-148277620   1.69e-19   324-401   Intermediate filament protein, coiled coil region  
  0.0000000146   94-129   Intermediate filament protein, coiled coil region  
NYSGRC-15431316   1.92e-22   394-471   Intermediate filament protein, coiled coil region  
  0.000000000011   164-198   Intermediate filament protein, coiled coil region  
  0.000439   200-272   Intermediate filament protein, coiled coil region  
NYSGRC-15431318   2.44e-22   343-413   Intermediate filament protein, coiled coil region  
  0.00000000152   102-135   Intermediate filament protein, coiled coil region  
NYSGRC-169164037   0.0000000000000174   410-469   Intermediate filament protein, coiled coil region  
  0.000000101   206-240   Intermediate filament protein, coiled coil region  
NYSGRC-169216428   0.000000000000162   432-495   Intermediate filament protein, coiled coil region  
  0.00141   257-279   Intermediate filament protein, coiled coil region  
NYSGRC-27734744   0.0000000732   115-148   Intermediate filament protein, coiled coil region  
NYSGRC-27894337   4.53e-24   298-376   Intermediate filament protein, coiled coil region  
  0.000000000115   68-104   Intermediate filament protein, coiled coil region  
NYSGRC-31559829   2.79e-20   311-389   Intermediate filament protein, coiled coil region  
  0.0000000288   77-111   Intermediate filament protein, coiled coil region  
NYSGRC-32483416   2.09e-23   331-408   Intermediate filament protein, coiled coil region  
  0.00000000068   96-129   Intermediate filament protein, coiled coil region  
NYSGRC-38176300   0.00000000453   241-312   Intermediate filament protein, coiled coil region  
  0.0000889   7-41   Intermediate filament protein, coiled coil region  
NYSGRC-4503979   2.09e-23   294-372   Intermediate filament protein, coiled coil region  
  0.00000000000033   68-104   Intermediate filament protein, coiled coil region  
NYSGRC-4557699   2.62e-22   357-435   Intermediate filament protein, coiled coil region  
  0.00000000146   123-158   Intermediate filament protein, coiled coil region  
NYSGRC-45597458   8.02e-19   395-472   Intermediate filament protein, coiled coil region  
  0.000000000115   163-197   Intermediate filament protein, coiled coil region  
  0.000408   208-273   Intermediate filament protein, coiled coil region  
NYSGRC-55749932   7.15e-25   333-411   Intermediate filament protein, coiled coil region  
  0.000000000000173   106-142   Intermediate filament protein, coiled coil region  
NYSGRC-94538345   6.28e-23   325-402   Intermediate filament protein, coiled coil region  
  0.000000000392   95-129   Intermediate filament protein, coiled coil region  
NYSGRC-9506669   5.93e-22   373-451   Intermediate filament protein, coiled coil region  
  0.00000000204   138-173   Intermediate filament protein, coiled coil region  
NYSGXRC-13050a   2.44e-24   308-386   Intermediate filament protein, coiled coil region  
  0.0000000022   78-112   Intermediate filament protein, coiled coil region  
NYSGXRC-13051a   7.15e-21   335-412   Intermediate filament protein, coiled coil region  
  0.000000000033   105-139   Intermediate filament protein, coiled coil region  
  0.000575   143-213   Intermediate filament protein, coiled coil region  
NYSGXRC-13151a   0.0000000000000327   250-319   Intermediate filament protein, coiled coil region  
  0.00000942   9-44   Intermediate filament protein, coiled coil region  
NYSGXRC-13151b   0.0000000000000327   250-319   Intermediate filament protein, coiled coil region  
  0.00000942   9-44   Intermediate filament protein, coiled coil region  
R04E5.10B   0.00000000126   52-85   Intermediate filament protein, coiled coil region  
  0.000000148   326-400   Intermediate filament protein, coiled coil region  
hsi002011078.1   1.36e-16   320-387   Intermediate filament protein, coiled coil region  
  0.00000000942   31-64   Intermediate filament protein, coiled coil region  
mmt007116409.1   4.01e-22   398-475   Intermediate filament protein, coiled coil region  
  0.0000000000136   164-198   Intermediate filament protein, coiled coil region  
  0.00000209   212-280   Intermediate filament protein, coiled coil region  
 
Weak hits:
232221   0.0549   484-525   Intermediate filament protein, coiled coil region  
AAD37359   0.0549   484-525   Intermediate filament protein, coiled coil region  
APC5912   0.0241   37-87   Intermediate filament protein, coiled coil region  
FR778B   0.0994   5-50   Intermediate filament protein, coiled coil region  
HR1678   0.00345   105-123   Intermediate filament protein, coiled coil region  
HR1679   0.00345   105-123   Intermediate filament protein, coiled coil region  
HR1885   0.0157   55-92   Intermediate filament protein, coiled coil region  
HR2363   0.0157   55-92   Intermediate filament protein, coiled coil region  
HR3550D   0.0228   27-86   Intermediate filament protein, coiled coil region  
HR4755A   0.0408   30-69   Intermediate filament protein, coiled coil region  
Lmaj003459AAA   0.0034   30-88   Intermediate filament protein, coiled coil region  
Lmaj005679AAA   0.0837   18-60   Intermediate filament protein, coiled coil region  
Lmaj005679AAC   0.0244   18-60   Intermediate filament protein, coiled coil region  
Lmaj006413AAA   0.0126   60-118   Intermediate filament protein, coiled coil region  
NYSGRC-169169312   0.000141   326-373   Intermediate filament protein, coiled coil region  
Pfal003587AAA   0.00243   16-75   Intermediate filament protein, coiled coil region  
Pfu-919635-001   0.0112   14-38   Intermediate filament protein, coiled coil region  
Tbru017957AAA   0.0277   92-146   Intermediate filament protein, coiled coil region  
Tcru018933AAA   0.0126   253-303   Intermediate filament protein, coiled coil region  
Tcru023716AAA   0.0298   58-109   Intermediate filament protein, coiled coil region  
aae001001223.1   0.0107   15-58   Intermediate filament protein, coiled coil region  

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View all assignments containing a Intermediate filament protein, coiled coil region domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   91545 91545
No Yes Homo sapiens 76_38 Human 312 169
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 180 85
No Yes Gorilla gorilla 76_3.1 Western gorilla 291 147
No Yes Pongo abelii 76_2 Sumatran orangutan 158 78
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 152 75
No Yes Papio anubis 76 Olive baboon 210 99
No Yes Macaca mulatta 76_1 Rhesus monkey 284 161
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 492 246
No Yes Otolemur garnettii 76_3 Small-eared galago 182 92
No Yes Microcebus murinus 76_1 Gray mouse lemur 130 67
No Yes Rattus norvegicus 76_5.0 Norway rat 163 82
No Yes Mus musculus 76_38 House mouse 188 94
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 117 63
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 129 61
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 139 71
No Yes Cavia porcellus 76_3 Domestic guinea pig 71 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 144 69
No Yes Ochotona princeps 76 American pika 119 61
No Yes Tupaia belangeri 76 Northern tree shrew 108 57
No Yes Sus scrofa 76_10.2 Pig 138 69
No Yes Bos taurus 76_3.1 Cattle 177 82
No Yes Ovis aries 76_3.1 Sheep 163 77
No Yes Vicugna pacos 76_1 Alpaca 58 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 84 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 139 69
No Yes Ailuropoda melanoleuca 76_1 Giant panda 172 87
No Yes Canis familiaris 76_3.1 Dog 206 107
No Yes Felis catus 76_6.2 Domestic cat 161 79
No Yes Equus caballus 76_2 Horse 190 92
No Yes Myotis lucifugus 76_2.0 Little brown bat 168 86
No Yes Pteropus vampyrus 76_1 Large flying fox 132 69
No Yes Sorex araneus 76_1 European shrew 75 46
No Yes Erinaceus europaeus 76 Western European hedgehog 115 60
No Yes Procavia capensis 76_1 Cape rock hyrax 109 59
No Yes Loxodonta africana 76_3 African savanna elephant 188 90
No Yes Echinops telfairi 76 Small Madagascar hedgehog 103 57
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 177 77
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 60 39
No Yes Macropus eugenii 76_1.0 Tammar wallaby 118 66
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 160 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 121 63
No Yes Ornithorhynchus anatinus 76_5 Platypus 151 82
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 56 36
No Yes Meleagris gallopavo 76_2 Turkey 97 50
No Yes Gallus gallus 76_4 Chicken 73 39
No Yes Anas platyrhynchos 76_1.0 Mallard 56 34
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 53 37
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 88 48
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 69 43
No Yes Anolis carolinensis 76_2.0 Green anole 102 54
No Yes Xenopus laevis African clawed frog 367 182
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 121 64
No Yes Latimeria chalumnae 76_1 Coelacanth 82 41
No Yes Lepisosteus oculatus 76 Spotted gar 101 50
No Yes Gadus morhua 76_1 Atlantic cod 113 64
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 103 58
No Yes Takifugu rubripes 76_4 Torafugu 397 197
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 153 79
No Yes Oryzias latipes 76_1 Japanese medaka 128 67
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 88 49
No Yes Poecilia formosa 76 Amazon molly 105 48
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 116 59
No Yes Astyanax mexicanus 76 Mexican tetra 115 58
No Yes Danio rerio 76_9 Zebrafish 200 107
No Yes Oikopleura dioica   8 4
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 19 11
No Yes Ciona intestinalis 76 Vase tunicate 12 7
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 5 4
No Yes Adineta vaga   63 35
No Yes Octopus bimaculoides 280   17 12
No Yes Crassostrea gigas 22 Pacific oyster 7 4
No Yes Lottia gigantea Owl limpet 11 6
No Yes Helobdella robusta   21 12
No Yes Capitella sp. I   3 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 2 1
No Yes Bombyx mori Domestic silkworm 2 2
No Yes Nasonia vitripennis Jewel wasp 2 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 4 4
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 1
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1
No Yes Atta cephalotes v1.1   2 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 2
No Yes Lucilia cuprina Australian sheep blowfly 4 2
No Yes Drosophila grimshawi 1.3   4 2
No Yes Drosophila willistoni 1.3   4 2
No Yes Drosophila pseudoobscura 2.13   4 2
No Yes Drosophila persimilis 1.3   4 3
No Yes Drosophila suzukii   4 2
No Yes Drosophila yakuba 1.3   4 2
No Yes Drosophila simulans 1.3   2 1
No Yes Drosophila sechellia 1.3   4 2
No Yes Drosophila melanogaster 76_5 Fruit fly 10 5
No Yes Drosophila erecta 1.3   4 2
No Yes Drosophila ananassae 1.3   4 2
No Yes Drosophila virilis 1.2   4 2
No Yes Drosophila mojavensis 1.3   4 2
No Yes Megaselia scalaris 22   2 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 4 2
No Yes Anopheles darlingi 22 American malaria mosquito 4 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 4 2
No Yes Tribolium castaneum 3.0 Red flour beetle 2 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 1
No Yes Acyrthosiphon pisum Pea aphid 5 3
No Yes Rhodnius prolixus 22   2 1
No Yes Daphnia pulex Common water flea 3 2
No Yes Strigamia maritima 22   2 1
No Yes Sarcoptes scabiei   2 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 1
No Yes Pristionchus pacificus   11 7
No Yes Meloidogyne incognita Southern root-knot nematode 10 5
No Yes Meloidogyne hapla   3 2
No Yes Onchocerca volvulus 22   10 5
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 14 10
No Yes Caenorhabditis japonica   17 10
No Yes Caenorhabditis brenneri   24 13
No Yes Caenorhabditis remanei   24 13
No Yes Caenorhabditis elegans 76_235 Roundworm 48 25
No Yes Caenorhabditis briggsae 2   25 14
No Yes Trichinella spiralis 22   8 5
No Yes Hymenolepis microstoma   7 4
No Yes Echinococcus multilocularis   6 4
No Yes Echinococcus granulosus   6 4
No Yes Taenia solium Pork tapeworm 6 4
No Yes Schistosoma mansoni   6 4
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   4 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 1
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   4 2
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Amborella trichopoda 22   2 2
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Trichomonas vaginalis   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 238 119
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 4 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 4 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 14 10
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 34 18
No Yes Homo sapiens 75_37 (old version GRC) Human 313 169
No Yes Homo sapiens (NCBI version) Human 185 86
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 157 72
No Yes Loa loa v3.3 (Request) Eye worm 11 6
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 8 7
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 7 5
No Yes Homo sapiens 69_37 Human 184 85
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 152 72
No Yes Gorilla gorilla 69_3.1 Western gorilla 208 106
No Yes Pongo abelii 69_2 Sumatran orangutan 153 75
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 136 66
No Yes Macaca mulatta 69_1 Rhesus monkey 220 122
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 154
No Yes Otolemur garnettii 69_3 Small-eared galago 179 91
No Yes Microcebus murinus 69_1 Gray mouse lemur 130 67
No Yes Rattus norvegicus 69_3.4 Norway rat 145 73
No Yes Mus musculus 69_38 House mouse 159 74
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 117 63
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 126 60
No Yes Cavia porcellus 69_3 Domestic guinea pig 69 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 122 60
No Yes Ochotona princeps 69 American pika 119 61
No Yes Tupaia belangeri 69 Northern tree shrew 108 57
No Yes Sus scrofa 69_10.2 Pig 131 64
No Yes Bos taurus 69_3.1 Cattle 166 77
No Yes Vicugna pacos 69_1 Alpaca 58 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 84 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 139 69
No Yes Ailuropoda melanoleuca 69_1 Giant panda 153 77
No Yes Canis familiaris 69_3.1 Dog 149 76
No Yes Felis catus 69 Domestic cat 116 63
No Yes Equus caballus 69_2 Horse 165 81
No Yes Myotis lucifugus 69_2.0 Little brown bat 167 85
No Yes Pteropus vampyrus 69_1 Large flying fox 132 69
No Yes Sorex araneus 69_1 European shrew 75 46
No Yes Erinaceus europaeus 69 Western European hedgehog 115 60
No Yes Procavia capensis 69_1 Cape rock hyrax 109 59
No Yes Loxodonta africana 69_3 African savanna elephant 123 60
No Yes Echinops telfairi 69 Small Madagascar hedgehog 103 57
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 85 53
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 60 39
No Yes Macropus eugenii 69_1.0 Tammar wallaby 118 66
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 141 69
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 116 60
No Yes Ornithorhynchus anatinus 69_5 Platypus 125 70
No Yes Petromyzon marinus 69_7.0 Sea lamprey 53 33
No Yes Meleagris gallopavo 69_2 Turkey 56 32
No Yes Gallus gallus 69_2 Chicken 62 35
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 49 34
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 60 39
No Yes Anolis carolinensis 69_2.0 Green anole 82 44
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 96 50
No Yes Latimeria chalumnae 69_1 Coelacanth 77 39
No Yes Gadus morhua 69_1 Atlantic cod 89 52
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 90 51
No Yes Takifugu rubripes 69_4 Torafugu 90 46
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 85 44
No Yes Oryzias latipes 69_1 Japanese medaka 88 48
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 88 49
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 98 50
No Yes Danio rerio 69_9 Zebrafish 128 65
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 12 6
No Yes Ciona intestinalis 69 Vase tunicate 12 7
No Yes Drosophila melanogaster 69_5 Fruit fly 4 2
No Yes Caenorhabditis elegans 69_215 Roundworm 21 11
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   37582 19325
No Yes Protozoadb 2010_08 (Protozoadb)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3252 1692
No Yes Uniprot 2018_03 genome   24274 12807
No Yes Global Ocean Sampling Expedition (GOS)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   31 31
No Yes TargetDB (Targets)   100 54

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.