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  Home > Genomes > NCBI plasmid sequences > Clostridium neurotoxins, "coiled-coil" domain domains


Clostridium neurotoxins, "coiled-coil" domain superfamily domain assignments
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NCBI plasmid sequences

Network of domain occurrence in all genomes

Assignment details

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NCBI plasmid sequences (Plasmids) has 16 significant domains in 16 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|169834607|ref|YP_001693307.1|NC_010379   3.79e-126   536-861   Clostridium neurotoxins, "coiled-coil" domain  
gi|169834701|ref|YP_001693308.1|NC_010379   6.28e-118   498-828   Clostridium neurotoxins, "coiled-coil" domain  
gi|169834914|ref|YP_001715702.1|NC_010418   2.62e-121   465-796   Clostridium neurotoxins, "coiled-coil" domain  
gi|169835008|ref|YP_001715703.1|NC_010418   3.53e-111   545-870   Clostridium neurotoxins, "coiled-coil" domain  
gi|187935807|ref|YP_001893660.1|NC_010680   1.44e-117   498-828   Clostridium neurotoxins, "coiled-coil" domain  
gi|187935837|ref|YP_001893661.1|NC_010680   1.16e-130   536-861   Clostridium neurotoxins, "coiled-coil" domain  
gi|229587275|ref|YP_002860313.1|NC_012654   1.7e-114   549-875   Clostridium neurotoxins, "coiled-coil" domain  
gi|229587276|ref|YP_002860314.1|NC_012654   9.29e-119   465-796   Clostridium neurotoxins, "coiled-coil" domain  
gi|229587402|ref|YP_002860440.1|NC_012654   1.14e-126   536-861   Clostridium neurotoxins, "coiled-coil" domain  
gi|229587403|ref|YP_002860441.1|NC_012654   6.28e-118   498-828   Clostridium neurotoxins, "coiled-coil" domain  
gi|28373188|ref|NP_783831.1|NC_004565   2.62e-116   559-884   Clostridium neurotoxins, "coiled-coil" domain  
gi|331270959|ref|YP_004385670.1|NC_015417   1.57e-113   499-828   Clostridium neurotoxins, "coiled-coil" domain  
gi|331270960|ref|YP_004385671.1|NC_015417   3.66e-111   545-869   Clostridium neurotoxins, "coiled-coil" domain  
gi|544674224|ref|WP_021107079.1|NZ_AOSX01000021   4.71e-120   465-796   Clostridium neurotoxins, "coiled-coil" domain  
gi|544674225|ref|WP_021107080.1|NZ_AOSX01000021   2.09e-120   534-864   Clostridium neurotoxins, "coiled-coil" domain  
gi|557606997|ref|YP_008774963.1|NC_022778   1.57e-116   559-884   Clostridium neurotoxins, "coiled-coil" domain  
 
Weak hits:
gi|10954423|ref|NP_067561.1|NC_002579   0.00196   5-40   Clostridium neurotoxins, "coiled-coil" domain  
gi|157149611|ref|YP_001456654.1|NC_009795   0.0589   105-163   Clostridium neurotoxins, "coiled-coil" domain  
gi|157149635|ref|YP_001456688.1|NC_009796   0.0562   80-142   Clostridium neurotoxins, "coiled-coil" domain  
gi|169823548|ref|YP_001691051.1|NC_010371   0.0968   19-87   Clostridium neurotoxins, "coiled-coil" domain  
gi|203288327|ref|YP_002223377.1|NC_011246   0.0942   27-80   Clostridium neurotoxins, "coiled-coil" domain  
gi|203288512|ref|YP_002223419.1|NC_011247   0.00288   179-258   Clostridium neurotoxins, "coiled-coil" domain  
gi|203288513|ref|YP_002223420.1|NC_011247   0.00249   241-330   Clostridium neurotoxins, "coiled-coil" domain  
gi|203288594|ref|YP_002223501.1|NC_011247   0.0942   27-80   Clostridium neurotoxins, "coiled-coil" domain  
gi|209401021|ref|YP_002268577.1|NC_011352   0.0106   99-149   Clostridium neurotoxins, "coiled-coil" domain  
gi|219048285|ref|YP_002455505.1|NC_011787   0.00157   28-114   Clostridium neurotoxins, "coiled-coil" domain  
gi|219857322|ref|YP_002474167.1|NC_011839   0.017   99-153   Clostridium neurotoxins, "coiled-coil" domain  
gi|307591465|ref|YP_003900264.1|NC_014534   0.0085   13-76   Clostridium neurotoxins, "coiled-coil" domain  
gi|307592468|ref|YP_003900059.1|NC_014533   0.0262   11-74   Clostridium neurotoxins, "coiled-coil" domain  
gi|332288046|ref|YP_004169232.1|NC_014937   0.0719   45-169   Clostridium neurotoxins, "coiled-coil" domain  
gi|332687296|ref|YP_004457069.1|NC_015517   0.0432   106-155   Clostridium neurotoxins, "coiled-coil" domain  
gi|336055426|ref|YP_004563712.1|NC_015603   0.00353   100-153   Clostridium neurotoxins, "coiled-coil" domain  
gi|377808769|ref|YP_005005784.1|NC_016608   0.00693   101-153   Clostridium neurotoxins, "coiled-coil" domain  
gi|384183809|ref|YP_005569443.1|NC_017202   0.0719   45-169   Clostridium neurotoxins, "coiled-coil" domain  
gi|386859060|ref|YP_006259069.1|NC_017778   0.0314   179-278   Clostridium neurotoxins, "coiled-coil" domain  
gi|386859061|ref|YP_006259070.1|NC_017778   0.00051   200-314   Clostridium neurotoxins, "coiled-coil" domain  
gi|386859139|ref|YP_006259148.1|NC_017778   0.0968   27-80   Clostridium neurotoxins, "coiled-coil" domain  
gi|387908787|ref|YP_006331081.1|NC_017919   0.0916   55-91   Clostridium neurotoxins, "coiled-coil" domain  
gi|399140252|ref|YP_006546353.1|NC_018265   0.0641   226-276   Clostridium neurotoxins, "coiled-coil" domain  
gi|399140326|ref|YP_006546427.1|NC_018265   0.0201   17-122   Clostridium neurotoxins, "coiled-coil" domain  
gi|399140337|ref|YP_006546438.1|NC_018265   0.0201   17-122   Clostridium neurotoxins, "coiled-coil" domain  
gi|407702530|ref|YP_006815680.1|NC_018687   0.0746   394-510   Clostridium neurotoxins, "coiled-coil" domain  
gi|407702546|ref|YP_006815695.1|NC_018688   0.0746   394-510   Clostridium neurotoxins, "coiled-coil" domain  
gi|449092656|ref|YP_007425096.1|NC_020239   0.0719   45-169   Clostridium neurotoxins, "coiled-coil" domain  
gi|452202812|ref|YP_007492192.1|NC_020393   0.0719   45-169   Clostridium neurotoxins, "coiled-coil" domain  
gi|472279591|ref|YP_007655242.1|NC_020820   0.0131   99-150   Clostridium neurotoxins, "coiled-coil" domain  
gi|490050486|ref|WP_003952833.1|NZ_CM000914   0.0602   248-274   Clostridium neurotoxins, "coiled-coil" domain  
gi|490050486|ref|WP_003952833.1|NZ_CM001019   0.0602   248-274   Clostridium neurotoxins, "coiled-coil" domain  
gi|513843245|ref|YP_008122661.1|NC_021516   0.0131   98-152   Clostridium neurotoxins, "coiled-coil" domain  
gi|532360768|ref|YP_008450596.1|NC_022114   0.0131   99-151   Clostridium neurotoxins, "coiled-coil" domain  
gi|54307216|ref|YP_133746.1|NC_006377   0.0432   100-153   Clostridium neurotoxins, "coiled-coil" domain  
gi|56121871|ref|YP_145787.1|NC_006493   0.0497   66-123   Clostridium neurotoxins, "coiled-coil" domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   905 905
No Yes Clostridium tetani E88   1 1
No Yes Clostridium botulinum A str. ATCC 3502   2 2
No Yes Clostridium tetani genome 12124569   1 1
No Yes Clostridium botulinum H04402 065   2 2
No Yes Clostridium botulinum BKT015925   2 2
No Yes Clostridium botulinum F str. 230613   2 2
No Yes Clostridium botulinum F str. Langeland   2 2
No Yes Clostridium botulinum E3 str. Alaska E43   2 2
No Yes Clostridium botulinum B1 str. Okra   2 2
No Yes Clostridium botulinum Ba4 str. 657   4 4
No Yes Clostridium botulinum A2 str. Kyoto   2 2
No Yes Clostridium botulinum A3 str. Loch Maree   2 2
No Yes Clostridium botulinum A str. Hall   2 2
No Yes Clostridium botulinum A str. ATCC 19397   2 2
No Yes Mouse Gut Community lean1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   385 385
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   23 23
No Yes Uniprot 2018_03 genome   312 312
No Yes Global Ocean Sampling Expedition (GOS)   5 5
No Yes NCBI plasmid sequences (Plasmids)   16 16
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   48 48
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   65 65
No Yes UniProt viral sequences (Viral)   7 7

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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