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  Home > Genomes > Canis familiaris 69_3.1 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Canis familiaris 69_3.1

Assignment details

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Canis familiaris 69_3.1 has 292 significant domains in 48 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCAFP00000000985   0.000000000000681   87-144   Complement control module/SCR domain  
  0.000000000000702   599-660   Complement control module/SCR domain  
  0.00000000000389   665-721   Complement control module/SCR domain  
  0.0000128   24-93   Complement control module/SCR domain  
  0.0000167   545-585   Complement control module/SCR domain  
ENSCAFP00000001127   6.34e-21   3171-3242   Complement control module/SCR domain  
  1.48e-18   2816-2880   Complement control module/SCR domain  
  2.7e-18   2873-2941   Complement control module/SCR domain  
  6.12e-18   3112-3182   Complement control module/SCR domain  
  6.48e-18   2932-2998   Complement control module/SCR domain  
  2.08e-17   3055-3123   Complement control module/SCR domain  
  4.17e-17   2757-2826   Complement control module/SCR domain  
  7.15e-17   3231-3300   Complement control module/SCR domain  
  0.00000000000000189   2223-2292   Complement control module/SCR domain  
  0.00000000000000222   2630-2697   Complement control module/SCR domain  
  0.0000000000000025   3290-3346   Complement control module/SCR domain  
  0.00000000000000278   2987-3048   Complement control module/SCR domain  
  0.0000000000000032   485-556   Complement control module/SCR domain  
  0.00000000000000347   3351-3419   Complement control module/SCR domain  
  0.0000000000000264   2568-2641   Complement control module/SCR domain  
  0.0000000000000378   1009-1069   Complement control module/SCR domain  
  0.0000000000000378   2051-2113   Complement control module/SCR domain  
  0.0000000000000432   1527-1591   Complement control module/SCR domain  
  0.0000000000001   1700-1765   Complement control module/SCR domain  
  0.000000000000139   663-722   Complement control module/SCR domain  
  0.000000000000167   1182-1244   Complement control module/SCR domain  
  0.00000000000032   1877-1943   Complement control module/SCR domain  
  0.000000000000553   177-238   Complement control module/SCR domain  
  0.0000000000013   1353-1415   Complement control module/SCR domain  
  0.00000000000195   3410-3468   Complement control module/SCR domain  
  0.00000000000337   834-901   Complement control module/SCR domain  
  0.00000000000389   2702-2764   Complement control module/SCR domain  
  0.0000000000702   2394-2457   Complement control module/SCR domain  
ENSCAFP00000001882   0.00000000000389   2247-2307   Complement control module/SCR domain  
ENSCAFP00000003307   0.0000000000107   36-97   Complement control module/SCR domain  
ENSCAFP00000004347   3.61e-19   1915-1984   Complement control module/SCR domain  
  4.45e-19   2214-2283   Complement control module/SCR domain  
  2.36e-18   1857-1926   Complement control module/SCR domain  
  2.36e-18   2031-2099   Complement control module/SCR domain  
  3.2e-18   2842-2911   Complement control module/SCR domain  
  4.86e-18   2900-2969   Complement control module/SCR domain  
  1.53e-17   3308-3377   Complement control module/SCR domain  
  3.2e-17   2449-2519   Complement control module/SCR domain  
  3.2e-17   2958-3027   Complement control module/SCR domain  
  1.39e-16   1752-1815   Complement control module/SCR domain  
  1.39e-16   2566-2635   Complement control module/SCR domain  
  2.78e-16   2508-2577   Complement control module/SCR domain  
  4.45e-16   2742-2795   Complement control module/SCR domain  
  6.81e-16   3132-3199   Complement control module/SCR domain  
  0.00000000000000153   2333-2401   Complement control module/SCR domain  
  0.00000000000000431   3016-3081   Complement control module/SCR domain  
  0.00000000000000486   2784-2845   Complement control module/SCR domain  
  0.0000000000000128   2624-2692   Complement control module/SCR domain  
  0.0000000000000208   3485-3544   Complement control module/SCR domain  
  0.0000000000000445   1974-2036   Complement control module/SCR domain  
  0.0000000000000486   437-503   Complement control module/SCR domain  
  0.0000000000000695   3367-3432   Complement control module/SCR domain  
  0.000000000000598   3076-3142   Complement control module/SCR domain  
  0.000000000000764   376-447   Complement control module/SCR domain  
  0.00000000000153   2272-2336   Complement control module/SCR domain  
  0.00000000000292   2088-2156   Complement control module/SCR domain  
  0.00000000000473   1698-1764   Complement control module/SCR domain  
  0.000000000025   3190-3257   Complement control module/SCR domain  
  0.0000000000375   2392-2460   Complement control module/SCR domain  
  0.000000000107   3426-3493   Complement control module/SCR domain  
  0.000000000264   3250-3313   Complement control module/SCR domain  
  0.000000000486   2153-2219   Complement control module/SCR domain  
  0.0000128   496-560   Complement control module/SCR domain  
  0.000584   727-780   Complement control module/SCR domain  
ENSCAFP00000004476   0.00000000000089   176-246   Complement control module/SCR domain  
  0.00000000000584   236-296   Complement control module/SCR domain  
ENSCAFP00000004788   0.0000301   750-803   Complement control module/SCR domain  
ENSCAFP00000005199   0.000000000181   1272-1335   Complement control module/SCR domain  
  0.00000000375   1208-1280   Complement control module/SCR domain  
  0.0000000124   1146-1212   Complement control module/SCR domain  
  0.00000334   1077-1150   Complement control module/SCR domain  
ENSCAFP00000010233   0.0000000000000681   240-310   Complement control module/SCR domain  
ENSCAFP00000012846   1.48e-19   2403-2471   Complement control module/SCR domain  
  2.7e-18   2460-2529   Complement control module/SCR domain  
  3.1e-18   2759-2830   Complement control module/SCR domain  
  6.39e-18   2643-2711   Complement control module/SCR domain  
  2.5e-16   2700-2770   Complement control module/SCR domain  
  2.64e-16   2520-2588   Complement control module/SCR domain  
  0.00000000000000236   72-144   Complement control module/SCR domain  
  0.0000000000000025   2877-2934   Complement control module/SCR domain  
  0.0000000000000027   2939-3007   Complement control module/SCR domain  
  0.00000000000000334   1114-1178   Complement control module/SCR domain  
  0.00000000000000904   2819-2888   Complement control module/SCR domain  
  0.0000000000000236   251-312   Complement control module/SCR domain  
  0.0000000000000256   2155-2228   Complement control module/SCR domain  
  0.0000000000000264   421-488   Complement control module/SCR domain  
  0.0000000000000431   939-1009   Complement control module/SCR domain  
  0.0000000000000737   1464-1527   Complement control module/SCR domain  
  0.0000000000000751   2343-2407   Complement control module/SCR domain  
  0.0000000000000834   2575-2637   Complement control module/SCR domain  
  0.000000000000167   596-656   Complement control module/SCR domain  
  0.000000000000208   1810-1879   Complement control module/SCR domain  
  0.00000000000025   1288-1351   Complement control module/SCR domain  
  0.000000000000361   1638-1702   Complement control module/SCR domain  
  0.00000000000104   2217-2284   Complement control module/SCR domain  
  0.00000000000297   769-829   Complement control module/SCR domain  
  0.0000000000405   1981-2045   Complement control module/SCR domain  
  0.000000000057   2998-3056   Complement control module/SCR domain  
  0.0000000000778   2300-2355   Complement control module/SCR domain  
ENSCAFP00000015145   2.62e-18   1171-1233   Complement control module/SCR domain  
  0.00000000000000256   144-216   Complement control module/SCR domain  
  0.000000000000103   85-155   Complement control module/SCR domain  
  0.00000000000292   1113-1172   Complement control module/SCR domain  
  0.00000000000367   685-741   Complement control module/SCR domain  
  0.00000000000715   624-680   Complement control module/SCR domain  
  0.000000000012   1046-1106   Complement control module/SCR domain  
  0.000000000017   927-989   Complement control module/SCR domain  
  0.0000000000629   558-620   Complement control module/SCR domain  
  0.00000000027   864-938   Complement control module/SCR domain  
  0.000000000391   805-860   Complement control module/SCR domain  
  0.000000000823   987-1049   Complement control module/SCR domain  
  0.00000000157   205-264   Complement control module/SCR domain  
  0.00000000364   505-568   Complement control module/SCR domain  
  0.00000000393   262-325   Complement control module/SCR domain  
  0.0000000526   24-89   Complement control module/SCR domain  
  0.000000183   452-509   Complement control module/SCR domain  
  0.000000264   387-441   Complement control module/SCR domain  
  0.000669   324-382   Complement control module/SCR domain  
  0.0148   764-799   Complement control module/SCR domain  
ENSCAFP00000016597   1.33e-18   264-345   Complement control module/SCR domain  
  3.06e-16   83-148   Complement control module/SCR domain  
  0.0000000000000361   140-214   Complement control module/SCR domain  
  0.00000000000183   205-265   Complement control module/SCR domain  
  0.0000000000288   23-85   Complement control module/SCR domain  
ENSCAFP00000016788   3.89e-19   580-646   Complement control module/SCR domain  
  6.95e-19   452-527   Complement control module/SCR domain  
  0.0000000000000283   206-268   Complement control module/SCR domain  
  0.000000000000328   333-388   Complement control module/SCR domain  
  0.00000000000324   273-327   Complement control module/SCR domain  
  0.00000000000564   395-454   Complement control module/SCR domain  
  0.0000000000131   522-577   Complement control module/SCR domain  
  0.00000000459   91-148   Complement control module/SCR domain  
  0.0000000734   154-214   Complement control module/SCR domain  
  0.000000786   30-95   Complement control module/SCR domain  
ENSCAFP00000017158   6.25e-18   587-656   Complement control module/SCR domain  
  1.04e-17   967-1039   Complement control module/SCR domain  
  1.53e-17   76-148   Complement control module/SCR domain  
  9.31e-17   1415-1480   Complement control module/SCR domain  
  3.06e-16   1028-1096   Complement control module/SCR domain  
  3.24e-16   527-598   Complement control module/SCR domain  
  4.73e-16   392-461   Complement control module/SCR domain  
  5e-16   270-335   Complement control module/SCR domain  
  0.00000000000000195   137-205   Complement control module/SCR domain  
  0.00000000000000278   839-901   Complement control module/SCR domain  
  0.00000000000000625   1283-1351   Complement control module/SCR domain  
  0.00000000000000959   1731-1800   Complement control module/SCR domain  
  0.0000000000000113   1161-1222   Complement control module/SCR domain  
  0.0000000000000119   723-786   Complement control module/SCR domain  
  0.0000000000000148   335-403   Complement control module/SCR domain  
  0.0000000000000148   1807-1872   Complement control module/SCR domain  
  0.0000000000000208   467-537   Complement control module/SCR domain  
  0.000000000000031   209-270   Complement control module/SCR domain  
  0.0000000000000806   664-732   Complement control module/SCR domain  
  0.000000000000584   1863-1925   Complement control module/SCR domain  
  0.00000000000222   1227-1294   Complement control module/SCR domain  
  0.00000000000432   1103-1165   Complement control module/SCR domain  
  0.000000000513   906-971   Complement control module/SCR domain  
  0.000000000877   1359-1430   Complement control module/SCR domain  
  0.00000000229   16-81   Complement control module/SCR domain  
  0.000000236   804-850   Complement control module/SCR domain  
ENSCAFP00000017211   2.56e-16   158-220   Complement control module/SCR domain  
  8.36e-16   222-293   Complement control module/SCR domain  
  8.63e-16   96-168   Complement control module/SCR domain  
  0.00000000000122   408-470   Complement control module/SCR domain  
  0.0000000000175   284-356   Complement control module/SCR domain  
  0.000000000472   34-106   Complement control module/SCR domain  
  0.000000027   347-413   Complement control module/SCR domain  
ENSCAFP00000017232   0.0000000000000148   736-801   Complement control module/SCR domain  
  0.000000000000695   795-857   Complement control module/SCR domain  
  0.00000000000118   863-922   Complement control module/SCR domain  
  0.0000000000138   383-444   Complement control module/SCR domain  
  0.000000000931   558-622   Complement control module/SCR domain  
ENSCAFP00000017937   0.00000000222   74-130   Complement control module/SCR domain  
  0.00000347   27-74   Complement control module/SCR domain  
ENSCAFP00000018883   0.0000000000114   696-753   Complement control module/SCR domain  
ENSCAFP00000020355   1.33e-16   535-597   Complement control module/SCR domain  
  0.000000000000222   478-537   Complement control module/SCR domain  
  0.000000000000485   121-178   Complement control module/SCR domain  
  0.000000000486   176-240   Complement control module/SCR domain  
  0.00000000334   298-355   Complement control module/SCR domain  
  0.0000000076   63-119   Complement control module/SCR domain  
  0.0000000459   3-64   Complement control module/SCR domain  
  0.000105   356-412   Complement control module/SCR domain  
  0.00783   420-471   Complement control module/SCR domain  
ENSCAFP00000020424   0.0000000000000032   300-370   Complement control module/SCR domain  
ENSCAFP00000020517   1.39e-16   723-780   Complement control module/SCR domain  
ENSCAFP00000020979   0.000000000000202   1245-1305   Complement control module/SCR domain  
ENSCAFP00000020996   0.0000000000737   1311-1385   Complement control module/SCR domain  
  0.00000278   1254-1320   Complement control module/SCR domain  
  0.00000375   1377-1435   Complement control module/SCR domain  
  0.00607   1190-1254   Complement control module/SCR domain  
ENSCAFP00000021026   0.00000000000121   390-469   Complement control module/SCR domain  
  0.00000000000334   322-393   Complement control module/SCR domain  
ENSCAFP00000021036   0.0000000000000139   226-288   Complement control module/SCR domain  
  0.0000000000000222   103-174   Complement control module/SCR domain  
  0.000000000000324   157-228   Complement control module/SCR domain  
  0.000000000222   42-106   Complement control module/SCR domain  
ENSCAFP00000021199   0.000000000000334   365-435   Complement control module/SCR domain  
  0.0000000000236   307-368   Complement control module/SCR domain  
ENSCAFP00000022347   5e-16   310-384   Complement control module/SCR domain  
  0.00000000000000167   250-317   Complement control module/SCR domain  
  0.0000000000000082   374-447   Complement control module/SCR domain  
  0.0000000000000292   431-498   Complement control module/SCR domain  
  0.000000000000306   188-253   Complement control module/SCR domain  
  0.0000000000057   496-557   Complement control module/SCR domain  
ENSCAFP00000022356   0.0000000000000361   252-318   Complement control module/SCR domain  
  0.0000000000133   197-262   Complement control module/SCR domain  
ENSCAFP00000024385   0.000000000513   41-102   Complement control module/SCR domain  
ENSCAFP00000024595   0.0000000000528   811-870   Complement control module/SCR domain  
ENSCAFP00000024620   6.12e-16   300-369   Complement control module/SCR domain  
  0.0000000000000153   366-436   Complement control module/SCR domain  
ENSCAFP00000025819   0.00000000000000361   116-178   Complement control module/SCR domain  
  0.0000000000000195   263-322   Complement control module/SCR domain  
  0.00000000236   78-126   Complement control module/SCR domain  
ENSCAFP00000027446   0.000000000432   646-709   Complement control module/SCR domain  
  0.000000162   701-756   Complement control module/SCR domain  
ENSCAFP00000027458   0.00000000000417   572-636   Complement control module/SCR domain  
  0.0000000542   627-683   Complement control module/SCR domain  
ENSCAFP00000027819   0.00000000000000229   703-768   Complement control module/SCR domain  
  0.000000000000917   762-824   Complement control module/SCR domain  
  0.00000000000973   349-413   Complement control module/SCR domain  
  0.00000000000996   829-889   Complement control module/SCR domain  
  0.0000000000695   525-589   Complement control module/SCR domain  
ENSCAFP00000029992   0.0000000192   35-95   Complement control module/SCR domain  
ENSCAFP00000033637   1.53e-16   262-328   Complement control module/SCR domain  
  0.0000000000000011   200-266   Complement control module/SCR domain  
  0.00000000000000125   698-763   Complement control module/SCR domain  
  0.00000000000000139   317-383   Complement control module/SCR domain  
  0.00000000000000667   503-569   Complement control module/SCR domain  
  0.0000000000000107   565-630   Complement control module/SCR domain  
  0.0000000000000153   441-507   Complement control module/SCR domain  
  0.0000000000000167   386-449   Complement control module/SCR domain  
  0.0000000000000292   643-709   Complement control module/SCR domain  
ENSCAFP00000034006   0.00000000000102   39-104   Complement control module/SCR domain  
ENSCAFP00000034607   3.2e-16   106-182   Complement control module/SCR domain  
  0.0000000000000162   173-243   Complement control module/SCR domain  
  0.0000000000000944   234-299   Complement control module/SCR domain  
  0.00000000852   45-116   Complement control module/SCR domain  
ENSCAFP00000036452   1.39e-17   158-230   Complement control module/SCR domain  
  0.00000000000000625   219-280   Complement control module/SCR domain  
  0.0000000000367   94-163   Complement control module/SCR domain  
  0.0000000000567   33-98   Complement control module/SCR domain  
ENSCAFP00000038337   1.48e-16   126-188   Complement control module/SCR domain  
  0.0000000000000236   75-137   Complement control module/SCR domain  
  0.0000000000334   17-82   Complement control module/SCR domain  
ENSCAFP00000038780   0.000000000256   124-185   Complement control module/SCR domain  
  0.000000163   26-82   Complement control module/SCR domain  
ENSCAFP00000038839   0.00000000000000113   265-327   Complement control module/SCR domain  
  0.000000000000144   619-677   Complement control module/SCR domain  
  0.000000000000153   679-740   Complement control module/SCR domain  
  0.00000000000288   747-813   Complement control module/SCR domain  
  0.0000000485   440-505   Complement control module/SCR domain  
ENSCAFP00000039553   3.47e-18   2511-2579   Complement control module/SCR domain  
  7.78e-18   2751-2818   Complement control module/SCR domain  
  9.58e-18   2867-2938   Complement control module/SCR domain  
  1.35e-17   2927-2996   Complement control module/SCR domain  
  5.13e-17   2568-2635   Complement control module/SCR domain  
  5.56e-16   3047-3115   Complement control module/SCR domain  
  0.00000000000000334   178-250   Complement control module/SCR domain  
  0.00000000000000445   2808-2878   Complement control module/SCR domain  
  0.00000000000000998   1919-1987   Complement control module/SCR domain  
  0.0000000000000104   2263-2336   Complement control module/SCR domain  
  0.0000000000000148   2326-2393   Complement control module/SCR domain  
  0.0000000000000417   2453-2515   Complement control module/SCR domain  
  0.0000000000000514   1746-1808   Complement control module/SCR domain  
  0.0000000000000959   2684-2744   Complement control module/SCR domain  
  0.000000000000195   2627-2694   Complement control module/SCR domain  
  0.000000000000202   1046-1109   Complement control module/SCR domain  
  0.000000000000208   702-762   Complement control module/SCR domain  
  0.000000000000229   1221-1284   Complement control module/SCR domain  
  0.000000000000278   2979-3041   Complement control module/SCR domain  
  0.000000000000514   356-418   Complement control module/SCR domain  
  0.00000000000058   1395-1462   Complement control module/SCR domain  
  0.00000000000283   2089-2153   Complement control module/SCR domain  
  0.00000000000459   527-595   Complement control module/SCR domain  
  0.00000000000514   1572-1635   Complement control module/SCR domain  
  0.00000000000985   875-937   Complement control module/SCR domain  
  0.0000000000139   2397-2459   Complement control module/SCR domain  
  0.0000000000222   3106-3163   Complement control module/SCR domain  
ENSCAFP00000040477   5.94e-16   523-584   Complement control module/SCR domain  
  0.000000000000229   465-523   Complement control module/SCR domain  
  0.000000000000661   221-278   Complement control module/SCR domain  
  0.0000000000351   403-458   Complement control module/SCR domain  
  0.0000000000459   282-338   Complement control module/SCR domain  
  0.00000000283   105-158   Complement control module/SCR domain  
  0.0000000058   161-218   Complement control module/SCR domain  
  0.00000662   38-103   Complement control module/SCR domain  
  0.0000553   344-397   Complement control module/SCR domain  
ENSCAFP00000041952   0.000000000089   3299-3357   Complement control module/SCR domain  
ENSCAFP00000042329   1.95e-16   81-149   Complement control module/SCR domain  
ENSCAFP00000043017   0.000000000000195   130-202   Complement control module/SCR domain  
  0.000000000446   192-252   Complement control module/SCR domain  
  0.0000000996   71-129   Complement control module/SCR domain  
 
Weak hits:
ENSCAFP00000006915   0.0125   2-39   Complement control module/SCR domain  
ENSCAFP00000020784   0.000618   197-239   Complement control module/SCR domain  
ENSCAFP00000041384   0.00137   197-239   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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