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  Home > Genomes > Sarcophilus harrisii 76_7.0 > Plexin repeat domains


Plexin repeat superfamily domain assignments
in
Sarcophilus harrisii 76_7.0

Assignment details

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Sarcophilus harrisii 76_7.0 has 49 significant domains in 47 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSHAP00000000970   0.00000000000188   3-61   Plexin repeat  
ENSSHAP00000001095   0.000000000000907   506-558   Plexin repeat  
ENSSHAP00000001577   0.00000000000262   458-512   Plexin repeat  
ENSSHAP00000001578   0.00000000000279   480-534   Plexin repeat  
ENSSHAP00000001780   0.0000654   811-843   Plexin repeat  
ENSSHAP00000001781   0.0000628   754-786   Plexin repeat  
ENSSHAP00000001782   0.0000314   759-791   Plexin repeat  
ENSSHAP00000005379   0.0000000331   527-562   Plexin repeat  
ENSSHAP00000005448   0.00000000000968   513-561   Plexin repeat  
ENSSHAP00000006277   0.0000000000331   513-564   Plexin repeat  
ENSSHAP00000006278   0.0000000000244   493-544   Plexin repeat  
ENSSHAP00000007280   0.0000000576   506-538   Plexin repeat  
ENSSHAP00000008438   0.00000000000131   511-561   Plexin repeat  
  0.0000419   807-845   Plexin repeat  
ENSSHAP00000008439   0.00000732   109-147   Plexin repeat  
ENSSHAP00000010195   0.00000000000349   510-562   Plexin repeat  
ENSSHAP00000010461   0.000000000209   533-585   Plexin repeat  
ENSSHAP00000011392   0.000000000000955   477-525   Plexin repeat  
ENSSHAP00000011771   0.0000000000105   489-539   Plexin repeat  
ENSSHAP00000011772   0.00000000000863   430-480   Plexin repeat  
ENSSHAP00000011860   0.00000000000282   26-78   Plexin repeat  
ENSSHAP00000012632   0.000000000000162   20-78   Plexin repeat  
ENSSHAP00000013032   0.0000000000000523   512-565   Plexin repeat  
ENSSHAP00000013116   0.0000000000366   513-563   Plexin repeat  
ENSSHAP00000013181   0.00000000000114   427-478   Plexin repeat  
ENSSHAP00000013182   0.000000000275   444-475   Plexin repeat  
ENSSHAP00000013183   0.000000000262   422-453   Plexin repeat  
ENSSHAP00000015394   0.0000000106   453-488   Plexin repeat  
ENSSHAP00000015993   0.00000837   520-546   Plexin repeat  
ENSSHAP00000016216   0.000000000017   505-552   Plexin repeat  
ENSSHAP00000016217   0.00000000000011   492-546   Plexin repeat  
ENSSHAP00000016530   0.000000000349   428-468   Plexin repeat  
ENSSHAP00000016531   0.000000000331   414-454   Plexin repeat  
ENSSHAP00000016594   0.00000000000222   25-77   Plexin repeat  
ENSSHAP00000018555   0.0000000000000562   9-61   Plexin repeat  
  0.0000445   308-341   Plexin repeat  
ENSSHAP00000018708   0.000000000102   515-561   Plexin repeat  
ENSSHAP00000018990   0.00000000000541   492-543   Plexin repeat  
ENSSHAP00000019282   0.000000000000424   26-84   Plexin repeat  
ENSSHAP00000019436   0.000000000068   470-520   Plexin repeat  
ENSSHAP00000020984   0.0000000000000377   24-78   Plexin repeat  
ENSSHAP00000020985   0.0000000000000523   25-79   Plexin repeat  
ENSSHAP00000020995   0.000000000628   26-76   Plexin repeat  
ENSSHAP00000020996   0.000000000628   26-76   Plexin repeat  
ENSSHAP00000021280   0.00000000000183   520-567   Plexin repeat  
ENSSHAP00000021281   0.0000000000016   447-494   Plexin repeat  
ENSSHAP00000021752   0.00000000018   548-599   Plexin repeat  
ENSSHAP00000021753   0.000000000113   516-567   Plexin repeat  
ENSSHAP00000022043   0.000000000331   514-565   Plexin repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   45094 45094
No Yes Homo sapiens 76_38 Human 143 139
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 34 33
No Yes Gorilla gorilla 76_3.1 Western gorilla 58 54
No Yes Pongo abelii 76_2 Sumatran orangutan 43 40
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 42 40
No Yes Papio anubis 76 Olive baboon 47 45
No Yes Macaca mulatta 76_1 Rhesus monkey 66 63
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 90 87
No Yes Otolemur garnettii 76_3 Small-eared galago 39 37
No Yes Microcebus murinus 76_1 Gray mouse lemur 32 30
No Yes Rattus norvegicus 76_5.0 Norway rat 44 42
No Yes Mus musculus 76_38 House mouse 96 93
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 36 34
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 44 41
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 40 36
No Yes Cavia porcellus 76_3 Domestic guinea pig 42 40
No Yes Oryctolagus cuniculus 76_2 Rabbit 42 39
No Yes Ochotona princeps 76 American pika 29 27
No Yes Tupaia belangeri 76 Northern tree shrew 22 22
No Yes Sus scrofa 76_10.2 Pig 41 40
No Yes Bos taurus 76_3.1 Cattle 39 37
No Yes Ovis aries 76_3.1 Sheep 42 41
No Yes Vicugna pacos 76_1 Alpaca 14 14
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 37 35
No Yes Mustela putorius furo 76_1.0 Domestic ferret 41 38
No Yes Ailuropoda melanoleuca 76_1 Giant panda 49 46
No Yes Canis familiaris 76_3.1 Dog 51 47
No Yes Felis catus 76_6.2 Domestic cat 40 38
No Yes Equus caballus 76_2 Horse 54 47
No Yes Myotis lucifugus 76_2.0 Little brown bat 41 38
No Yes Pteropus vampyrus 76_1 Large flying fox 39 38
No Yes Sorex araneus 76_1 European shrew 23 23
No Yes Erinaceus europaeus 76 Western European hedgehog 22 21
No Yes Procavia capensis 76_1 Cape rock hyrax 34 33
No Yes Loxodonta africana 76_3 African savanna elephant 60 53
No Yes Echinops telfairi 76 Small Madagascar hedgehog 26 26
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 45 42
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 16 16
No Yes Macropus eugenii 76_1.0 Tammar wallaby 32 31
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 49 47
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 38 37
No Yes Ornithorhynchus anatinus 76_5 Platypus 30 30
No Yes Saccoglossus kowalevskii v3.0   12 12
No Yes Petromyzon marinus 76_7.0 Sea lamprey 17 17
No Yes Meleagris gallopavo 76_2 Turkey 36 34
No Yes Gallus gallus 76_4 Chicken 39 36
No Yes Anas platyrhynchos 76_1.0 Mallard 30 28
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 33 31
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 36 34
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 46 43
No Yes Anolis carolinensis 76_2.0 Green anole 40 37
No Yes Xenopus laevis African clawed frog 52 48
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 45 41
No Yes Latimeria chalumnae 76_1 Coelacanth 41 40
No Yes Lepisosteus oculatus 76 Spotted gar 59 56
No Yes Gadus morhua 76_1 Atlantic cod 56 53
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 77 73
No Yes Takifugu rubripes 76_4 Torafugu 308 286
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 75 70
No Yes Oryzias latipes 76_1 Japanese medaka 82 73
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 64 60
No Yes Poecilia formosa 76 Amazon molly 69 65
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 94 87
No Yes Astyanax mexicanus 76 Mexican tetra 60 56
No Yes Danio rerio 76_9 Zebrafish 103 100
No Yes Oikopleura dioica   6 6
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 17 17
No Yes Ciona intestinalis 76 Vase tunicate 6 6
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 34 32
No Yes Adineta vaga   6 6
No Yes Octopus bimaculoides 280   13 12
No Yes Crassostrea gigas 22 Pacific oyster 16 15
No Yes Lottia gigantea Owl limpet 12 10
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   8 7
No Yes Danaus plexippus OGS1.0 Monarch butterfly 9 9
No Yes Heliconius melpomene Postman butterfly 8 7
No Yes Bombyx mori Domestic silkworm 6 5
No Yes Nasonia vitripennis Jewel wasp 10 9
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 21 21
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 10 9
No Yes Linepithema humile v1.1 Argentine ant 9 9
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 9 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 9 8
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 7
No Yes Atta cephalotes v1.1   8 7
No Yes Camponotus floridanus v3.3 Florida carpenter ant 8 7
No Yes Lucilia cuprina Australian sheep blowfly 7 6
No Yes Drosophila grimshawi 1.3   10 9
No Yes Drosophila willistoni 1.3   9 8
No Yes Drosophila pseudoobscura 2.13   10 8
No Yes Drosophila persimilis 1.3   10 8
No Yes Drosophila suzukii   9 8
No Yes Drosophila yakuba 1.3   8 8
No Yes Drosophila simulans 1.3   6 6
No Yes Drosophila sechellia 1.3   9 8
No Yes Drosophila melanogaster 76_5 Fruit fly 27 25
No Yes Drosophila erecta 1.3   8 8
No Yes Drosophila ananassae 1.3   8 7
No Yes Drosophila virilis 1.2   8 8
No Yes Drosophila mojavensis 1.3   9 8
No Yes Megaselia scalaris 22   5 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 10 9
No Yes Culex pipiens quinquefasciatus Southern house mosquito 8 8
No Yes Anopheles darlingi 22 American malaria mosquito 5 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 9 8
No Yes Tribolium castaneum 3.0 Red flour beetle 8 7
No Yes Pediculus humanus corporis (Early assembly) Human body louse 8 8
No Yes Acyrthosiphon pisum Pea aphid 8 8
No Yes Rhodnius prolixus 22   6 5
No Yes Daphnia pulex Common water flea 9 8
No Yes Strigamia maritima 22   9 8
No Yes Sarcoptes scabiei   7 6
No Yes Tetranychus urticae Two-spotted spider mite 7 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 7 6
No Yes Pristionchus pacificus   4 3
No Yes Meloidogyne incognita Southern root-knot nematode 3 3
No Yes Meloidogyne hapla   2 2
No Yes Onchocerca volvulus 22   7 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 5 5
No Yes Caenorhabditis japonica   6 6
No Yes Caenorhabditis brenneri   9 8
No Yes Caenorhabditis remanei   6 6
No Yes Caenorhabditis elegans 76_235 Roundworm 11 11
No Yes Caenorhabditis briggsae 2   6 6
No Yes Trichinella spiralis 22   9 9
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   3 3
No Yes Echinococcus granulosus   3 3
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   3 3
No Yes Mnemiopsis leidyi Sea walnut 9 9
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   9 9
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 8
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   20 20
No Yes Trichoplax adhaerens   6 6
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   3 3
No Yes Cyanophora paradoxa   1 1
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 53 48
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 21 20
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 9 8
No Yes Ascaris suum Victoria/Ghent Pig roundworm 5 5
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 6 6
No Yes Homo sapiens 75_37 (old version GRC) Human 164 159
No Yes Homo sapiens (NCBI version) Human 67 64
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 42 40
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 7 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 7 7
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Homo sapiens 69_37 Human 43 40
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 34 33
No Yes Gorilla gorilla 69_3.1 Western gorilla 40 38
No Yes Pongo abelii 69_2 Sumatran orangutan 41 38
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 39 37
No Yes Macaca mulatta 69_1 Rhesus monkey 40 37
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 43 42
No Yes Otolemur garnettii 69_3 Small-eared galago 39 37
No Yes Microcebus murinus 69_1 Gray mouse lemur 32 30
No Yes Rattus norvegicus 69_3.4 Norway rat 41 39
No Yes Mus musculus 69_38 House mouse 42 40
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 36 34
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 39
No Yes Cavia porcellus 69_3 Domestic guinea pig 41 39
No Yes Oryctolagus cuniculus 69_2 Rabbit 38 36
No Yes Ochotona princeps 69 American pika 29 27
No Yes Tupaia belangeri 69 Northern tree shrew 22 22
No Yes Sus scrofa 69_10.2 Pig 28 27
No Yes Bos taurus 69_3.1 Cattle 38 36
No Yes Vicugna pacos 69_1 Alpaca 14 14
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 37 35
No Yes Mustela putorius furo 69_1.0 Domestic ferret 41 38
No Yes Ailuropoda melanoleuca 69_1 Giant panda 40 38
No Yes Canis familiaris 69_3.1 Dog 42 39
No Yes Felis catus 69 Domestic cat 29 28
No Yes Equus caballus 69_2 Horse 40 37
No Yes Myotis lucifugus 69_2.0 Little brown bat 41 38
No Yes Pteropus vampyrus 69_1 Large flying fox 39 38
No Yes Sorex araneus 69_1 European shrew 23 23
No Yes Erinaceus europaeus 69 Western European hedgehog 22 21
No Yes Procavia capensis 69_1 Cape rock hyrax 34 33
No Yes Loxodonta africana 69_3 African savanna elephant 40 37
No Yes Echinops telfairi 69 Small Madagascar hedgehog 26 26
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 20 19
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 16 16
No Yes Macropus eugenii 69_1.0 Tammar wallaby 32 31
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 37 35
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 37 36
No Yes Ornithorhynchus anatinus 69_5 Platypus 28 28
No Yes Petromyzon marinus 69_7.0 Sea lamprey 16 16
No Yes Meleagris gallopavo 69_2 Turkey 33 31
No Yes Gallus gallus 69_2 Chicken 33 31
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 33 31
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 33 31
No Yes Anolis carolinensis 69_2.0 Green anole 39 37
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 37 34
No Yes Latimeria chalumnae 69_1 Coelacanth 34 33
No Yes Gadus morhua 69_1 Atlantic cod 52 49
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 56 54
No Yes Takifugu rubripes 69_4 Torafugu 63 59
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 61 56
No Yes Oryzias latipes 69_1 Japanese medaka 62 56
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 64 60
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 67 62
No Yes Danio rerio 69_9 Zebrafish 65 63
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 6 6
No Yes Drosophila melanogaster 69_5 Fruit fly 9 8
No Yes Caenorhabditis elegans 69_215 Roundworm 6 6
No Yes NCBI 2017_08 genome   22733 21607
No Yes STRING v9.0.5 (STRING)   1251 1175
No Yes Uniprot 2018_03 genome   11027 10407
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   192 179
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   197 197
No Yes TargetDB (Targets)   64 62
No Yes UniProt viral sequences (Viral)   8 8

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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