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  Home > Genomes > Gorilla gorilla 76_3.1 > SOCS box-like domains


SOCS box-like superfamily domain assignments
in
Gorilla gorilla 76_3.1

Assignment details

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Gorilla gorilla 76_3.1 has 39 significant domains in 39 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000000306   0.0000000262   459-503   SOCS box-like  
ENSGGOP00000000465   0.00000693   235-277   SOCS box-like  
ENSGGOP00000000531   0.0000000068   460-510   SOCS box-like  
ENSGGOP00000002541   0.000000011   374-420   SOCS box-like  
ENSGGOP00000002585   0.000000706   221-262   SOCS box-like  
ENSGGOP00000002634   0.0000000085   381-429   SOCS box-like  
ENSGGOP00000002781   0.000000000706   525-576   SOCS box-like  
ENSGGOP00000002986   0.00000127   253-293   SOCS box-like  
ENSGGOP00000003164   0.0000144   250-292   SOCS box-like  
ENSGGOP00000005404   0.0000000144   427-469   SOCS box-like  
ENSGGOP00000006331   0.0000196   243-286   SOCS box-like  
ENSGGOP00000006366   0.00000235   374-421   SOCS box-like  
ENSGGOP00000007133   0.00000126   280-322   SOCS box-like  
ENSGGOP00000007717   0.0000000000693   168-207   SOCS box-like  
ENSGGOP00000008242   0.000000000759   143-181   SOCS box-like  
ENSGGOP00000008385   0.00000000131   524-579   SOCS box-like  
ENSGGOP00000008887   0.000000157   288-329   SOCS box-like  
ENSGGOP00000009942   0.00000000000000379   150-197   SOCS box-like  
ENSGGOP00000010670   0.000000445   322-364   SOCS box-like  
ENSGGOP00000010685   0.00000000000445   252-291   SOCS box-like  
ENSGGOP00000011236   0.00000366   235-272   SOCS box-like  
ENSGGOP00000012276   0.00000144   288-333   SOCS box-like  
ENSGGOP00000014360   0.000000157   145-190   SOCS box-like  
ENSGGOP00000014571   0.00000000000144   227-274   SOCS box-like  
ENSGGOP00000014987   0.0000000000837   375-419   SOCS box-like  
ENSGGOP00000015039   0.0000000589   585-633   SOCS box-like  
ENSGGOP00000015538   0.000000109   243-284   SOCS box-like  
ENSGGOP00000015901   0.000000000536   176-223   SOCS box-like  
ENSGGOP00000017983   0.000000000379   189-227   SOCS box-like  
ENSGGOP00000019900   0.0000000471   269-313   SOCS box-like  
ENSGGOP00000021946   0.00000000000129   210-257   SOCS box-like  
ENSGGOP00000022043   0.000000589   404-446   SOCS box-like  
ENSGGOP00000024541   0.00000000000109   497-535   SOCS box-like  
ENSGGOP00000024578   0.0000000000000327   387-427   SOCS box-like  
ENSGGOP00000025084   0.0000000000000981   482-523   SOCS box-like  
ENSGGOP00000025322   0.00000000144   546-601   SOCS box-like  
ENSGGOP00000026025   0.0000000222   416-460   SOCS box-like  
ENSGGOP00000026161   0.0000000262   465-509   SOCS box-like  
ENSGGOP00000028369   0.000000000497   189-227   SOCS box-like  
 
Weak hits:
ENSGGOP00000003663   0.0615   2-40   SOCS box-like  
ENSGGOP00000006112   0.00445   275-311   SOCS box-like  
ENSGGOP00000007715   0.000262   260-306   SOCS box-like  
ENSGGOP00000011284   0.000288   235-272   SOCS box-like  
ENSGGOP00000017280   0.0628   320-337   SOCS box-like  
ENSGGOP00000018867   0.034   218-235   SOCS box-like  
ENSGGOP00000021413   0.0667   337-354   SOCS box-like  
ENSGGOP00000028683   0.0876   341-359   SOCS box-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   29430 29430
No Yes Homo sapiens 76_38 Human 79 79
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 36 36
No Yes Gorilla gorilla 76_3.1 Western gorilla 39 39
No Yes Pongo abelii 76_2 Sumatran orangutan 29 29
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 37 37
No Yes Papio anubis 76 Olive baboon 33 33
No Yes Macaca mulatta 76_1 Rhesus monkey 40 40
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 65 65
No Yes Otolemur garnettii 76_3 Small-eared galago 32 32
No Yes Microcebus murinus 76_1 Gray mouse lemur 21 21
No Yes Rattus norvegicus 76_5.0 Norway rat 35 35
No Yes Mus musculus 76_38 House mouse 56 56
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 22 22
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 32 32
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 31 31
No Yes Cavia porcellus 76_3 Domestic guinea pig 30 30
No Yes Oryctolagus cuniculus 76_2 Rabbit 31 31
No Yes Ochotona princeps 76 American pika 23 23
No Yes Tupaia belangeri 76 Northern tree shrew 20 20
No Yes Sus scrofa 76_10.2 Pig 31 31
No Yes Bos taurus 76_3.1 Cattle 33 33
No Yes Ovis aries 76_3.1 Sheep 32 32
No Yes Vicugna pacos 76_1 Alpaca 20 20
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 30 30
No Yes Mustela putorius furo 76_1.0 Domestic ferret 30 30
No Yes Ailuropoda melanoleuca 76_1 Giant panda 32 32
No Yes Canis familiaris 76_3.1 Dog 32 32
No Yes Felis catus 76_6.2 Domestic cat 32 32
No Yes Equus caballus 76_2 Horse 30 30
No Yes Myotis lucifugus 76_2.0 Little brown bat 29 29
No Yes Pteropus vampyrus 76_1 Large flying fox 27 27
No Yes Sorex araneus 76_1 European shrew 11 11
No Yes Erinaceus europaeus 76 Western European hedgehog 13 13
No Yes Procavia capensis 76_1 Cape rock hyrax 23 23
No Yes Loxodonta africana 76_3 African savanna elephant 34 34
No Yes Echinops telfairi 76 Small Madagascar hedgehog 19 19
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 34 34
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 17 17
No Yes Macropus eugenii 76_1.0 Tammar wallaby 22 22
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 37 37
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 27 27
No Yes Ornithorhynchus anatinus 76_5 Platypus 16 16
No Yes Saccoglossus kowalevskii v3.0   45 45
No Yes Petromyzon marinus 76_7.0 Sea lamprey 15 15
No Yes Meleagris gallopavo 76_2 Turkey 29 29
No Yes Gallus gallus 76_4 Chicken 30 30
No Yes Anas platyrhynchos 76_1.0 Mallard 26 26
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 26 26
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 28 28
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 31 31
No Yes Anolis carolinensis 76_2.0 Green anole 28 28
No Yes Xenopus laevis African clawed frog 44 44
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 27 27
No Yes Latimeria chalumnae 76_1 Coelacanth 38 38
No Yes Lepisosteus oculatus 76 Spotted gar 37 37
No Yes Gadus morhua 76_1 Atlantic cod 33 33
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 38 38
No Yes Takifugu rubripes 76_4 Torafugu 59 59
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 38 38
No Yes Oryzias latipes 76_1 Japanese medaka 35 35
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 40 40
No Yes Poecilia formosa 76 Amazon molly 39 39
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 40 40
No Yes Astyanax mexicanus 76 Mexican tetra 38 38
No Yes Danio rerio 76_9 Zebrafish 63 63
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 9 9
No Yes Ciona intestinalis 76 Vase tunicate 6 6
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 15 15
No Yes Adineta vaga   11 11
No Yes Octopus bimaculoides 280   36 36
No Yes Crassostrea gigas 22 Pacific oyster 32 32
No Yes Lottia gigantea Owl limpet 21 21
No Yes Helobdella robusta   13 13
No Yes Capitella sp. I   33 33
No Yes Danaus plexippus OGS1.0 Monarch butterfly 8 8
No Yes Heliconius melpomene Postman butterfly 6 6
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 4 4
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 12 12
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 11 11
No Yes Linepithema humile v1.1 Argentine ant 7 7
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 8 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 4 4
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 8
No Yes Atta cephalotes v1.1   8 8
No Yes Camponotus floridanus v3.3 Florida carpenter ant 9 9
No Yes Lucilia cuprina Australian sheep blowfly 6 6
No Yes Drosophila grimshawi 1.3   8 8
No Yes Drosophila willistoni 1.3   8 8
No Yes Drosophila pseudoobscura 2.13   8 8
No Yes Drosophila persimilis 1.3   6 6
No Yes Drosophila suzukii   7 6
No Yes Drosophila yakuba 1.3   8 8
No Yes Drosophila simulans 1.3   7 7
No Yes Drosophila sechellia 1.3   8 8
No Yes Drosophila melanogaster 76_5 Fruit fly 23 23
No Yes Drosophila erecta 1.3   7 7
No Yes Drosophila ananassae 1.3   8 8
No Yes Drosophila virilis 1.2   8 8
No Yes Drosophila mojavensis 1.3   9 9
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 13 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 5
No Yes Anopheles darlingi 22 American malaria mosquito 4 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 8 8
No Yes Tribolium castaneum 3.0 Red flour beetle 10 10
No Yes Pediculus humanus corporis (Early assembly) Human body louse 5 5
No Yes Acyrthosiphon pisum Pea aphid 8 8
No Yes Rhodnius prolixus 22   9 9
No Yes Daphnia pulex Common water flea 9 9
No Yes Strigamia maritima 22   14 14
No Yes Sarcoptes scabiei   3 3
No Yes Tetranychus urticae Two-spotted spider mite 6 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 10
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   7 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 5 5
No Yes Caenorhabditis japonica   2 2
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis remanei   2 2
No Yes Caenorhabditis elegans 76_235 Roundworm 3 3
No Yes Caenorhabditis briggsae 2   2 2
No Yes Trichinella spiralis 22   2 2
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   4 4
No Yes Echinococcus granulosus   4 4
No Yes Taenia solium Pork tapeworm 4 4
No Yes Schistosoma mansoni   5 5
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   16 16
No Yes Nematostella vectensis 1.0 Starlet sea anemone 12 12
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   6 6
No Yes Trichoplax adhaerens   2 2
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 51 51
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 14 14
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 10 10
No Yes Ascaris suum Victoria/Ghent Pig roundworm 4 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 86 86
No Yes Homo sapiens (NCBI version) Human 53 53
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 33 33
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 4 4
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 3 3
No Yes Homo sapiens 69_37 Human 35 35
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 34 34
No Yes Gorilla gorilla 69_3.1 Western gorilla 34 34
No Yes Pongo abelii 69_2 Sumatran orangutan 28 28
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 33 33
No Yes Macaca mulatta 69_1 Rhesus monkey 31 31
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 34 34
No Yes Otolemur garnettii 69_3 Small-eared galago 32 32
No Yes Microcebus murinus 69_1 Gray mouse lemur 21 21
No Yes Rattus norvegicus 69_3.4 Norway rat 30 30
No Yes Mus musculus 69_38 House mouse 33 33
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 22 22
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 30 30
No Yes Cavia porcellus 69_3 Domestic guinea pig 30 30
No Yes Oryctolagus cuniculus 69_2 Rabbit 30 30
No Yes Ochotona princeps 69 American pika 23 23
No Yes Tupaia belangeri 69 Northern tree shrew 20 20
No Yes Sus scrofa 69_10.2 Pig 28 28
No Yes Bos taurus 69_3.1 Cattle 31 31
No Yes Vicugna pacos 69_1 Alpaca 20 20
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 30 30
No Yes Mustela putorius furo 69_1.0 Domestic ferret 30 30
No Yes Ailuropoda melanoleuca 69_1 Giant panda 30 30
No Yes Canis familiaris 69_3.1 Dog 29 29
No Yes Felis catus 69 Domestic cat 19 19
No Yes Equus caballus 69_2 Horse 29 29
No Yes Myotis lucifugus 69_2.0 Little brown bat 28 28
No Yes Pteropus vampyrus 69_1 Large flying fox 27 27
No Yes Sorex araneus 69_1 European shrew 11 11
No Yes Erinaceus europaeus 69 Western European hedgehog 13 13
No Yes Procavia capensis 69_1 Cape rock hyrax 23 23
No Yes Loxodonta africana 69_3 African savanna elephant 32 32
No Yes Echinops telfairi 69 Small Madagascar hedgehog 19 19
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 14 14
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 17 17
No Yes Macropus eugenii 69_1.0 Tammar wallaby 22 22
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 30 30
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 27 27
No Yes Ornithorhynchus anatinus 69_5 Platypus 16 16
No Yes Petromyzon marinus 69_7.0 Sea lamprey 14 14
No Yes Meleagris gallopavo 69_2 Turkey 28 28
No Yes Gallus gallus 69_2 Chicken 28 28
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 26 26
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 27 27
No Yes Anolis carolinensis 69_2.0 Green anole 28 28
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 26 26
No Yes Latimeria chalumnae 69_1 Coelacanth 32 32
No Yes Gadus morhua 69_1 Atlantic cod 26 26
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 36 36
No Yes Takifugu rubripes 69_4 Torafugu 30 30
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 32 32
No Yes Oryzias latipes 69_1 Japanese medaka 30 30
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 40 40
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 37 37
No Yes Danio rerio 69_9 Zebrafish 41 41
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 6 6
No Yes Ciona intestinalis 69 Vase tunicate 6 6
No Yes Drosophila melanogaster 69_5 Fruit fly 8 8
No Yes Caenorhabditis elegans 69_215 Roundworm 2 2
No Yes NCBI 2017_08 genome   14758 14754
No Yes STRING v9.0.5 (STRING)   901 901
No Yes Uniprot 2018_03 genome   7179 7177
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   16 16
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   23 23
No Yes TargetDB (Targets)   35 35
No Yes UniProt viral sequences (Viral)   2 2

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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