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PMT central region-like superfamily domain assignments
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STRING v9.0.5

Network of domain occurrence in all genomes

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STRING v9.0.5 (STRING) has 14 significant domains in 11 proteins.

     

Sequence ID   Evalue   Region   Family  
196600.VVA1030   3.4e-106   3580-3853   PMT central region-like  
  1.44e-63   2364-2607   PMT central region-like  
216895.VV2_0479   6.02e-107   3580-3853   PMT central region-like  
  1.16e-63   2364-2607   PMT central region-like  
243265.plu2400   3.66e-102   59-332   PMT central region-like  
243277.VC1451   1.31e-56   2561-2804   PMT central region-like  
291112.PAU_02098   6.41e-94   34-308   PMT central region-like  
345073.VC0395_A1059   6.8e-57   651-894   PMT central region-like  
380703.AHA_1359   9.68e-95   3080-3346   PMT central region-like  
529507.PMI0004   3.4e-45   663-933   PMT central region-like  
529507.PMI2043   4.05e-70   1986-2229   PMT central region-like  
  5.1e-68   2661-2904   PMT central region-like  
579112.VCM66_1407   1.31e-56   2561-2804   PMT central region-like  
593588.VCD_002895   6.67e-57   633-876   PMT central region-like  
 
Weak hits:
10116.ENSRNOP00000019923   0.034   342-404   PMT central region-like  
10116.ENSRNOP00000028933   0.0445   116-182   PMT central region-like  
10116.ENSRNOP00000040156   0.00157   73-148   PMT central region-like  
10116.ENSRNOP00000041501   0.0719   114-188   PMT central region-like  
10116.ENSRNOP00000047751   0.00209   79-147   PMT central region-like  
10116.ENSRNOP00000050673   0.0641   117-180   PMT central region-like  
10116.ENSRNOP00000051131   0.0392   115-182   PMT central region-like  
10228.JGI51477   0.0471   219-273   PMT central region-like  
10228.JGI62629   0.00131   24-99   PMT central region-like  
121224.XP_002429766   0.0116   31-91   PMT central region-like  
15368.BRADI1G43150.1   0.0915   252-285   PMT central region-like  
188937.MA2751   0.0379   151-239   PMT central region-like  
198094.BA_1276   0.0131   54-126   PMT central region-like  
203119.Cthe_0058   0.0111   203-235   PMT central region-like  
203124.Tery_0508   0.0115   59-128   PMT central region-like  
203124.Tery_0524   0.0405   53-262   PMT central region-like  
205914.HS_0857   0.0301   43-97   PMT central region-like  
226186.BT_4778   0.0549   136-199   PMT central region-like  
228400.HSM_1332   0.0301   43-97   PMT central region-like  
243232.MJ1554   0.000915   298-358   PMT central region-like  
260799.BAS1183   0.0131   54-126   PMT central region-like  
261594.GBAA1276   0.0131   54-126   PMT central region-like  
264198.Reut_B5596   0.0112   3-45   PMT central region-like  
267748.MMOB0940   0.00445   53-143   PMT central region-like  
273063.ST1438   0.0562   134-179   PMT central region-like  
278197.PEPE_0913   0.0235   299-408   PMT central region-like  
281687.CJA16934   0.0248   21-56   PMT central region-like  
293614.A1C_01155   0.0719   122-191   PMT central region-like  
29760.GSVIVG00000774001   0.0183   37-107   PMT central region-like  
309798.COPRO5265_1099   0.00196   115-199   PMT central region-like  
309807.SRU_0750   0.0222   175-250   PMT central region-like  
316056.RPC_2514   0.0196   58-124   PMT central region-like  
318167.Sfri_2541   0.0122   22-47   PMT central region-like  
324057.Pjdr2_3688   0.0418   365-465   PMT central region-like  
326297.Sama_0278   0.0915   436-565   PMT central region-like  
33169.AGOS_ADL317C   0.0641   22-105   PMT central region-like  
336407.RBE_0855   0.00811   231-322   PMT central region-like  
340047.MCAP_0072   0.0798   510-633   PMT central region-like  
361100.BCQ_PI017   0.00301   10-56   PMT central region-like  
381666.H16_B0227   0.0209   3-46   PMT central region-like  
387093.SUN_2451   0.0301   63-126   PMT central region-like  
391896.A1I_02640   0.00536   91-151   PMT central region-like  
392500.Swoo_4847   0.00523   191-262   PMT central region-like  
402612.FP0099   0.0209   127-235   PMT central region-like  
402612.FP1949   0.0706   396-456   PMT central region-like  
402880.MmarC5_0481   0.0667   181-206   PMT central region-like  
412965.COSY_0661   0.0353   131-187   PMT central region-like  
420246.GTNG_3085   0.00288   251-333   PMT central region-like  
435590.BVU_2142   0.0209   139-202   PMT central region-like  
436308.Nmar_1212   0.034   332-400   PMT central region-like  
43989.cce_0732   0.0654   50-129   PMT central region-like  
441768.ACL_0854   0.0144   36-98   PMT central region-like  
471223.GWCH70_3053   0.0667   252-303   PMT central region-like  
4924.PICST_28890   0.034   31-88   PMT central region-like  
498211.CJA_3636   0.0575   221-256   PMT central region-like  
5059.CADAFLAP00005641   0.0562   261-314   PMT central region-like  
5062.CADAORAP00005143   0.0562   261-314   PMT central region-like  
521097.Coch_1094   0.0392   261-340   PMT central region-like  
526218.Sterm_0935   0.0693   25-155   PMT central region-like  
5476.CAL0004642   0.0745   95-185   PMT central region-like  
552536.LMHCC_1536   0.0012   163-235   PMT central region-like  
565034.BHWA1_00752   0.0785   57-116   PMT central region-like  
568206.BAMEG_3317   0.0131   54-126   PMT central region-like  
5722.A2DT33   0.0445   7-64   PMT central region-like  
5722.A2DXY1   0.00772   66-100   PMT central region-like  
5722.A2EB64   0.0115   244-333   PMT central region-like  
5722.A2EJV1   0.0745   58-112   PMT central region-like  
5722.A2EV51   0.00301   112-185   PMT central region-like  
5722.A2GG85   0.0196   168-202   PMT central region-like  
573064.Mefer_1487   0.00196   279-356   PMT central region-like  
573826.CD36_40670   0.0418   124-167   PMT central region-like  
5875.TP01_0150   0.0641   110-166   PMT central region-like  
592021.BAA_1349   0.0131   54-126   PMT central region-like  
598659.NAMH_0405   0.0157   86-159   PMT central region-like  
63737.Npun_F0425   0.0458   61-118   PMT central region-like  
63737.Npun_F2482   0.0183   31-90   PMT central region-like  
66084.WRi_012400   0.0445   174-212   PMT central region-like  
6945.ISCW004919-PA   0.0275   289-325   PMT central region-like  
70601.PH1204   0.0366   78-143   PMT central region-like  
7159.AAEL001772-PA   0.0654   238-282   PMT central region-like  
73239.Q7R8I1   0.0101   55-151   PMT central region-like  
73239.Q7RBY1   0.0602   64-135   PMT central region-like  
73239.Q7RCT9   0.0327   119-184   PMT central region-like  
73239.Q7RLU0   0.0122   115-226   PMT central region-like  
73239.Q7RN39   0.0144   55-156   PMT central region-like  
7719.ENSCINP00000007347   0.0366   269-366   PMT central region-like  
81824.JGI29070   0.0536   108-157   PMT central region-like  
93059.P9211_04661   0.0157   398-471   PMT central region-like  
9544.ENSMMUP00000034097   0.0497   512-583   PMT central region-like  
9598.ENSPTRP00000029538   0.0719   512-583   PMT central region-like  
9600.ENSPPYP00000017685   0.0994   512-583   PMT central region-like  
9796.ENSECAP00000010045   0.0497   244-411   PMT central region-like  

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Add assignments from groups of genomes

View all assignments containing a PMT central region-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   1390 1390
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Vibrio anguillarum 775   2 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Xenorhabdus nematophila ATCC 19061   2 1
No Yes Proteus mirabilis HI4320   3 2
No Yes Pasteurella multocida subsp. multocida str. HN06   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   2 1
No Yes Vibrio vulnificus CMCP6   2 1
No Yes Vibrio vulnificus YJ016   2 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Proteus mirabilis BB2000   4 3
No Yes NCBI 2017_08 genome   973 889
No Yes STRING v9.0.5 (STRING)   14 11
No Yes Uniprot 2018_03 genome   311 273
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   20 20
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   16 16
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.