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Viral glycoprotein ectodomain-like superfamily domain assignments
in
Caenorhabditis japonica

Network of domain occurrence in all genomes


Assignment details

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Caenorhabditis japonica has 13 significant domains in 13 proteins.

     

Sequence ID   Evalue   Region   Family  
CJA00164   0.00000000225   359-459   Glycoprotein B-like  
CJA03667   0.00000602   1013-1083   Glycoprotein B-like  
CJA07018   0.0000126   677-772   Glycoprotein B-like  
CJA17664   0.000000942   120-234   Glycoprotein B-like  
CJA20449   0.000000000262   671-777   Glycoprotein B-like  
CJA20551   0.000000107   860-929   Glycoprotein B-like  
CJA20674   0.000000654   540-649   Glycoprotein B-like  
CJA23045   0.00000575   456-522   Glycoprotein B-like  
CJA23547   0.00000732   34-98   Glycoprotein B-like  
CJA24087   0.00000000288   894-990   Glycoprotein B-like  
CJA24352   0.00000471   4-70   Glycoprotein B-like  
CJA25319   0.00000034   186-297   Glycoprotein B-like  
CJA26018   0.00000732   34-98   Glycoprotein B-like  
 
Weak hits:
CJA02100   0.00275   114-481   Glycoprotein B-like  
CJA02123   0.00162   117-230   Glycoprotein B-like  
CJA10241   0.0288   192-248   Spike glycoprotein-like  
CJA12410   0.00314   122-233   Glycoprotein B-like  
CJA18596   0.000732   24-375   Glycoprotein B-like  
CJA19196   0.0445   101-214   Glycoprotein B-like  
CJA28204   0.0575   11-138   Spike glycoprotein-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   12764 12764
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 1
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Caenorhabditis japonica   13 13
No Yes Caenorhabditis brenneri   10 10
No Yes Caenorhabditis remanei   17 17
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes NCBI 2017_08 genome   210 207
No Yes STRING v9.0.5 (STRING)   37 36
No Yes Uniprot 2018_03 genome   8742 8728
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   93 93
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   61 61
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   202 189
No Yes TargetDB (Targets)   3 3
No Yes UniProt viral sequences (Viral)   3323 3322

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