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  Home > Genomes > Cavia porcellus 69_3 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Cavia porcellus 69_3

Assignment details

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Cavia porcellus 69_3 has 260 significant domains in 47 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000000283   0.0000000000278   131-188   Complement control module/SCR domain  
  0.000000000189   193-254   Complement control module/SCR domain  
  0.000000000809   7-69   Complement control module/SCR domain  
  0.0000000361   68-129   Complement control module/SCR domain  
ENSCPOP00000000333   1.07e-16   131-193   Complement control module/SCR domain  
  0.00000000000032   76-141   Complement control module/SCR domain  
  0.0000688   46-84   Complement control module/SCR domain  
ENSCPOP00000000592   3.47e-16   80-147   Complement control module/SCR domain  
ENSCPOP00000002274   0.00000000000158   33-97   Complement control module/SCR domain  
ENSCPOP00000002400   0.00000000000000957   476-541   Complement control module/SCR domain  
  0.000000000000486   535-597   Complement control module/SCR domain  
  0.000000000000655   603-662   Complement control module/SCR domain  
  0.000000000089   119-177   Complement control module/SCR domain  
ENSCPOP00000002770   0.00000000111   766-825   Complement control module/SCR domain  
ENSCPOP00000002868   0.000000000621   2-63   Complement control module/SCR domain  
ENSCPOP00000003285   0.0000000000403   1508-1582   Complement control module/SCR domain  
  0.00000695   1574-1631   Complement control module/SCR domain  
  0.0000222   1451-1514   Complement control module/SCR domain  
  0.0504   1387-1449   Complement control module/SCR domain  
ENSCPOP00000003298   0.00000000000000473   116-178   Complement control module/SCR domain  
  0.0000000000000118   263-323   Complement control module/SCR domain  
  0.0000000181   78-126   Complement control module/SCR domain  
ENSCPOP00000003881   2.29e-16   172-235   Complement control module/SCR domain  
  0.0000000000000115   111-183   Complement control module/SCR domain  
  0.0000000000000418   232-295   Complement control module/SCR domain  
  0.00000000000195   481-538   Complement control module/SCR domain  
  0.0000000000105   50-116   Complement control module/SCR domain  
  0.000000000612   424-483   Complement control module/SCR domain  
  0.000000000985   303-369   Complement control module/SCR domain  
  0.0000528   385-430   Complement control module/SCR domain  
ENSCPOP00000004144   9.69e-22   586-666   Complement control module/SCR domain  
  1.06e-17   456-531   Complement control module/SCR domain  
  0.0000000000000104   336-392   Complement control module/SCR domain  
  0.0000000000000433   209-271   Complement control module/SCR domain  
  0.00000000000119   399-458   Complement control module/SCR domain  
  0.0000000000055   276-330   Complement control module/SCR domain  
  0.00000000000931   524-582   Complement control module/SCR domain  
  0.00000000629   159-217   Complement control module/SCR domain  
  0.0000000183   92-151   Complement control module/SCR domain  
  0.0000354   41-97   Complement control module/SCR domain  
ENSCPOP00000005118   0.000000000288   119-180   Complement control module/SCR domain  
  0.000000027   23-78   Complement control module/SCR domain  
ENSCPOP00000005165   4.59e-18   814-876   Complement control module/SCR domain  
  0.000000000000553   757-817   Complement control module/SCR domain  
  0.0000000000021   325-382   Complement control module/SCR domain  
  0.00000000000283   637-701   Complement control module/SCR domain  
  0.0000000000059   387-442   Complement control module/SCR domain  
  0.00000000000971   689-751   Complement control module/SCR domain  
  0.000000000223   262-322   Complement control module/SCR domain  
  0.00000000135   508-562   Complement control module/SCR domain  
  0.00000000891   93-148   Complement control module/SCR domain  
  0.0000000131   567-647   Complement control module/SCR domain  
  0.0000000197   153-210   Complement control module/SCR domain  
  0.00000229   449-501   Complement control module/SCR domain  
  0.000486   22-87   Complement control module/SCR domain  
  0.00742   206-270   Complement control module/SCR domain  
ENSCPOP00000005446   0.000000000000556   144-214   Complement control module/SCR domain  
  0.00000000000598   204-264   Complement control module/SCR domain  
ENSCPOP00000005648   0.00000000000361   696-765   Complement control module/SCR domain  
ENSCPOP00000005657   4.85e-17   90-162   Complement control module/SCR domain  
  5.37e-17   151-224   Complement control module/SCR domain  
  0.0000000000000445   211-274   Complement control module/SCR domain  
  0.000000000000162   406-467   Complement control module/SCR domain  
  0.0000000000249   30-95   Complement control module/SCR domain  
  0.000000000229   365-415   Complement control module/SCR domain  
  0.0000000157   293-349   Complement control module/SCR domain  
ENSCPOP00000006232   0.00000000000000264   440-506   Complement control module/SCR domain  
  0.00000000000000625   254-320   Complement control module/SCR domain  
  0.00000000000000681   502-568   Complement control module/SCR domain  
  0.00000000000000834   199-265   Complement control module/SCR domain  
  0.00000000000000848   378-443   Complement control module/SCR domain  
  0.00000000000000987   315-382   Complement control module/SCR domain  
  0.000000000000032   634-699   Complement control module/SCR domain  
  0.000000000000104   579-644   Complement control module/SCR domain  
ENSCPOP00000006751   0.0000000000000054   710-775   Complement control module/SCR domain  
  0.000000000000944   770-847   Complement control module/SCR domain  
  0.00000000000264   356-421   Complement control module/SCR domain  
  0.0000000000341   836-896   Complement control module/SCR domain  
  0.000000000135   532-596   Complement control module/SCR domain  
ENSCPOP00000006792   1.67e-18   2677-2745   Complement control module/SCR domain  
  2.83e-18   3033-3104   Complement control module/SCR domain  
  4.86e-18   3093-3162   Complement control module/SCR domain  
  9.03e-18   2917-2985   Complement control module/SCR domain  
  7.83e-17   2734-2801   Complement control module/SCR domain  
  5.7e-16   3213-3281   Complement control module/SCR domain  
  0.00000000000000101   321-393   Complement control module/SCR domain  
  0.00000000000000621   2060-2128   Complement control module/SCR domain  
  0.00000000000000648   117-178   Complement control module/SCR domain  
  0.00000000000000958   2404-2477   Complement control module/SCR domain  
  0.0000000000000202   2467-2534   Complement control module/SCR domain  
  0.0000000000000351   1887-1949   Complement control module/SCR domain  
  0.0000000000000405   2792-2861   Complement control module/SCR domain  
  0.0000000000000417   2974-3038   Complement control module/SCR domain  
  0.0000000000000445   3145-3207   Complement control module/SCR domain  
  0.0000000000000756   1188-1251   Complement control module/SCR domain  
  0.000000000000132   2587-2649   Complement control module/SCR domain  
  0.000000000000132   1536-1603   Complement control module/SCR domain  
  0.000000000000195   499-561   Complement control module/SCR domain  
  0.000000000000208   2850-2910   Complement control module/SCR domain  
  0.000000000000236   845-905   Complement control module/SCR domain  
  0.000000000000278   1363-1426   Complement control module/SCR domain  
  0.00000000000297   2230-2294   Complement control module/SCR domain  
  0.00000000000431   1713-1777   Complement control module/SCR domain  
  0.000000000005   670-738   Complement control module/SCR domain  
  0.00000000000653   3272-3331   Complement control module/SCR domain  
  0.0000000000244   2539-2604   Complement control module/SCR domain  
  0.0000000000256   1018-1080   Complement control module/SCR domain  
ENSCPOP00000007035   0.000000000000167   280-350   Complement control module/SCR domain  
ENSCPOP00000007300   0.000000000000431   376-456   Complement control module/SCR domain  
  0.00000000000124   308-379   Complement control module/SCR domain  
ENSCPOP00000007339   0.0000000000292   3-65   Complement control module/SCR domain  
ENSCPOP00000007999   0.00000000000111   360-431   Complement control module/SCR domain  
  0.0000000000278   299-369   Complement control module/SCR domain  
ENSCPOP00000008368   0.000000564   102-160   Complement control module/SCR domain  
ENSCPOP00000010454   0.0000000000000222   367-438   Complement control module/SCR domain  
  0.0000000000000514   301-370   Complement control module/SCR domain  
ENSCPOP00000010587   1.81e-19   1961-2029   Complement control module/SCR domain  
  1.13e-18   2144-2213   Complement control module/SCR domain  
  1.67e-18   2773-2842   Complement control module/SCR domain  
  2.78e-18   2831-2900   Complement control module/SCR domain  
  3.61e-18   2379-2448   Complement control module/SCR domain  
  4.17e-18   1845-1914   Complement control module/SCR domain  
  1.11e-17   1787-1856   Complement control module/SCR domain  
  2.78e-17   3239-3308   Complement control module/SCR domain  
  5.7e-17   2889-2958   Complement control module/SCR domain  
  2.08e-16   2553-2620   Complement control module/SCR domain  
  3.47e-16   2670-2726   Complement control module/SCR domain  
  3.75e-16   1682-1745   Complement control module/SCR domain  
  6.67e-16   2263-2331   Complement control module/SCR domain  
  0.00000000000000139   2437-2506   Complement control module/SCR domain  
  0.00000000000000167   3298-3364   Complement control module/SCR domain  
  0.00000000000000195   3416-3475   Complement control module/SCR domain  
  0.00000000000000403   1903-1968   Complement control module/SCR domain  
  0.00000000000000931   2202-2273   Complement control module/SCR domain  
  0.0000000000000115   2495-2555   Complement control module/SCR domain  
  0.0000000000000181   2715-2777   Complement control module/SCR domain  
  0.0000000000000292   3063-3126   Complement control module/SCR domain  
  0.0000000000000556   1630-1699   Complement control module/SCR domain  
  0.0000000000001   439-505   Complement control module/SCR domain  
  0.000000000000118   2948-3013   Complement control module/SCR domain  
  0.00000000000126   378-449   Complement control module/SCR domain  
  0.00000000000128   3007-3073   Complement control module/SCR domain  
  0.00000000000181   3121-3184   Complement control module/SCR domain  
  0.00000000000334   2018-2086   Complement control module/SCR domain  
  0.0000000000082   3357-3425   Complement control module/SCR domain  
  0.00000000000945   2322-2390   Complement control module/SCR domain  
  0.0000000000737   2083-2150   Complement control module/SCR domain  
  0.000000000334   3181-3244   Complement control module/SCR domain  
  0.000001   493-554   Complement control module/SCR domain  
  0.00106   729-789   Complement control module/SCR domain  
ENSCPOP00000010647   1.19e-18   2175-2239   Complement control module/SCR domain  
  2.08e-18   2232-2300   Complement control module/SCR domain  
  3.37e-18   2290-2363   Complement control module/SCR domain  
  4.86e-18   2471-2541   Complement control module/SCR domain  
  1.03e-17   2414-2482   Complement control module/SCR domain  
  1.48e-17   2530-2588   Complement control module/SCR domain  
  3.47e-17   2116-2185   Complement control module/SCR domain  
  3.37e-16   1574-1644   Complement control module/SCR domain  
  0.00000000000000153   1989-2056   Complement control module/SCR domain  
  0.00000000000000903   2346-2407   Complement control module/SCR domain  
  0.00000000000000959   2705-2773   Complement control module/SCR domain  
  0.0000000000000167   356-419   Complement control module/SCR domain  
  0.0000000000000222   1927-2000   Complement control module/SCR domain  
  0.0000000000000405   1402-1463   Complement control module/SCR domain  
  0.0000000000000702   875-940   Complement control module/SCR domain  
  0.0000000000000806   1050-1115   Complement control module/SCR domain  
  0.000000000000181   10-69   Complement control module/SCR domain  
  0.000000000000459   1228-1294   Complement control module/SCR domain  
  0.00000000000089   530-592   Complement control module/SCR domain  
  0.00000000000108   701-763   Complement control module/SCR domain  
  0.00000000000162   2063-2127   Complement control module/SCR domain  
  0.00000000000278   181-249   Complement control module/SCR domain  
  0.00000000000459   2764-2821   Complement control module/SCR domain  
  0.0000000000058   2596-2649   Complement control module/SCR domain  
  0.00000000202   1747-1812   Complement control module/SCR domain  
ENSCPOP00000011052   6.18e-20   151-232   Complement control module/SCR domain  
  0.000000000000945   92-152   Complement control module/SCR domain  
  0.0000000000057   27-101   Complement control module/SCR domain  
  0.000000347   1-35   Complement control module/SCR domain  
ENSCPOP00000011165   4.03e-16   247-312   Complement control module/SCR domain  
  0.00000000000000862   307-381   Complement control module/SCR domain  
  0.0000000000000249   371-443   Complement control module/SCR domain  
  0.00000000000103   180-240   Complement control module/SCR domain  
  0.000000000005   490-551   Complement control module/SCR domain  
ENSCPOP00000011553   0.00000000000000229   725-782   Complement control module/SCR domain  
ENSCPOP00000011755   0.0000000000000113   82-144   Complement control module/SCR domain  
  0.0000000000000222   229-287   Complement control module/SCR domain  
  0.00000000138   45-97   Complement control module/SCR domain  
ENSCPOP00000012574   0.000000000172   33-95   Complement control module/SCR domain  
ENSCPOP00000013821   0.000000000195   1316-1383   Complement control module/SCR domain  
  0.00000000945   1247-1319   Complement control module/SCR domain  
  0.0000000181   1186-1250   Complement control module/SCR domain  
  0.000000848   1115-1189   Complement control module/SCR domain  
ENSCPOP00000013979   9.04e-20   2541-2609   Complement control module/SCR domain  
  1.32e-18   2598-2667   Complement control module/SCR domain  
  9.31e-18   2781-2849   Complement control module/SCR domain  
  1.89e-17   2897-2968   Complement control module/SCR domain  
  5.14e-16   2838-2908   Complement control module/SCR domain  
  0.00000000000000153   2657-2724   Complement control module/SCR domain  
  0.00000000000000208   3015-3072   Complement control module/SCR domain  
  0.00000000000000723   210-282   Complement control module/SCR domain  
  0.00000000000000729   3077-3145   Complement control module/SCR domain  
  0.0000000000000139   389-450   Complement control module/SCR domain  
  0.0000000000000208   2713-2774   Complement control module/SCR domain  
  0.0000000000000216   1252-1316   Complement control module/SCR domain  
  0.0000000000000256   1426-1489   Complement control module/SCR domain  
  0.0000000000000256   2355-2422   Complement control module/SCR domain  
  0.0000000000000337   1948-2017   Complement control module/SCR domain  
  0.0000000000000337   2957-3020   Complement control module/SCR domain  
  0.0000000000000375   1077-1149   Complement control module/SCR domain  
  0.0000000000000653   559-627   Complement control module/SCR domain  
  0.0000000000000764   2483-2545   Complement control module/SCR domain  
  0.000000000000125   734-794   Complement control module/SCR domain  
  0.000000000000208   1602-1665   Complement control module/SCR domain  
  0.000000000000351   1776-1841   Complement control module/SCR domain  
  0.000000000000567   6-66   Complement control module/SCR domain  
  0.00000000000112   2293-2361   Complement control module/SCR domain  
  0.00000000000337   2119-2183   Complement control module/SCR domain  
  0.00000000000756   907-967   Complement control module/SCR domain  
  0.0000000000514   3136-3193   Complement control module/SCR domain  
  0.000000000236   2436-2493   Complement control module/SCR domain  
ENSCPOP00000014133   0.0000000000264   572-637   Complement control module/SCR domain  
  0.0000000236   628-684   Complement control module/SCR domain  
ENSCPOP00000014177   0.00000000000000167   222-292   Complement control module/SCR domain  
ENSCPOP00000014382   0.0000000000000653   100-161   Complement control module/SCR domain  
  0.000000000000278   166-222   Complement control module/SCR domain  
  0.00000709   46-86   Complement control module/SCR domain  
ENSCPOP00000015689   0.0000000000000945   227-285   Complement control module/SCR domain  
  0.000000000000208   98-171   Complement control module/SCR domain  
  0.0000000000115   154-225   Complement control module/SCR domain  
  0.000000017   36-101   Complement control module/SCR domain  
ENSCPOP00000015879   1.06e-16   98-171   Complement control module/SCR domain  
  0.00000000000000513   222-282   Complement control module/SCR domain  
  0.00000000000301   162-232   Complement control module/SCR domain  
  0.000000000524   35-89   Complement control module/SCR domain  
ENSCPOP00000016630   0.000000000107   698-759   Complement control module/SCR domain  
ENSCPOP00000016852   4.59e-18   162-234   Complement control module/SCR domain  
  4.45e-16   223-291   Complement control module/SCR domain  
  0.0000000000249   96-166   Complement control module/SCR domain  
  0.00000000756   34-104   Complement control module/SCR domain  
ENSCPOP00000016988   8.76e-18   98-171   Complement control module/SCR domain  
  0.00000000000000113   222-284   Complement control module/SCR domain  
  0.00000000000764   162-230   Complement control module/SCR domain  
  0.00000000393   35-100   Complement control module/SCR domain  
ENSCPOP00000017235   3.28e-18   63-135   Complement control module/SCR domain  
  1.53e-16   124-191   Complement control module/SCR domain  
  1.95e-16   377-445   Complement control module/SCR domain  
  3.75e-16   515-579   Complement control module/SCR domain  
  5.44e-16   578-647   Complement control module/SCR domain  
  5.56e-16   255-320   Complement control module/SCR domain  
  0.00000000000000264   320-388   Complement control module/SCR domain  
  0.00000000000027   198-261   Complement control module/SCR domain  
  0.0000000000153   449-507   Complement control module/SCR domain  
  0.000000000485   2-73   Complement control module/SCR domain  
ENSCPOP00000017681   0.0000000000082   2086-2144   Complement control module/SCR domain  
ENSCPOP00000017758   0.000000000000417   86-147   Complement control module/SCR domain  
  0.00000000000167   153-209   Complement control module/SCR domain  
  0.00000278   22-75   Complement control module/SCR domain  
ENSCPOP00000019567   0.0000000000987   2629-2687   Complement control module/SCR domain  
ENSCPOP00000021023   0.0000000000000223   289-351   Complement control module/SCR domain  
  0.000000000000144   643-701   Complement control module/SCR domain  
  0.000000000000222   703-764   Complement control module/SCR domain  
  0.00000000000433   771-829   Complement control module/SCR domain  
  0.0000000459   464-529   Complement control module/SCR domain  
 
Weak hits:
ENSCPOP00000020349   0.00351   188-235   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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