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  Home > Genomes > Microcebus murinus 76_1 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Microcebus murinus 76_1

Assignment details

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Microcebus murinus 76_1 has 206 significant domains in 43 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000001105   3.52e-21   122-186   Complement control module/SCR domain  
  0.000000000000567   1-58   Complement control module/SCR domain  
ENSMICP00000001327   0.000000000000012   111-173   Complement control module/SCR domain  
  0.000000000000025   258-316   Complement control module/SCR domain  
  0.00000106   75-126   Complement control module/SCR domain  
ENSMICP00000001753   0.0000000115   73-129   Complement control module/SCR domain  
  0.00000334   26-73   Complement control module/SCR domain  
ENSMICP00000001876   2.7e-19   581-649   Complement control module/SCR domain  
  4.19e-17   453-519   Complement control module/SCR domain  
  0.0000000000000278   206-268   Complement control module/SCR domain  
  0.000000000000708   336-400   Complement control module/SCR domain  
  0.0000000000567   273-327   Complement control module/SCR domain  
  0.0000000183   154-214   Complement control module/SCR domain  
  0.0000000337   91-147   Complement control module/SCR domain  
  0.0000101   25-95   Complement control module/SCR domain  
ENSMICP00000001964   3.89e-18   1665-1734   Complement control module/SCR domain  
  1.22e-17   1607-1676   Complement control module/SCR domain  
  2.78e-17   2199-2269   Complement control module/SCR domain  
  4.09e-17   2316-2382   Complement control module/SCR domain  
  9.17e-17   1508-1566   Complement control module/SCR domain  
  3.61e-16   2083-2151   Complement control module/SCR domain  
  0.00000000000000103   2258-2327   Complement control module/SCR domain  
  0.00000000000000292   3112-3178   Complement control module/SCR domain  
  0.00000000000000473   3230-3289   Complement control module/SCR domain  
  0.00000000000000584   1723-1787   Complement control module/SCR domain  
  0.000000000000025   258-324   Complement control module/SCR domain  
  0.00000000000639   3171-3239   Complement control module/SCR domain  
  0.00000000000792   2142-2210   Complement control module/SCR domain  
  0.000000000612   203-268   Complement control module/SCR domain  
  0.0000000125   2040-2085   Complement control module/SCR domain  
  0.00000445   317-380   Complement control module/SCR domain  
  0.00000468   2912-2946   Complement control module/SCR domain  
  0.000005   1776-1814   Complement control module/SCR domain  
  0.000445   3089-3122   Complement control module/SCR domain  
  0.00917   547-608   Complement control module/SCR domain  
ENSMICP00000002527   0.00000000000834   358-428   Complement control module/SCR domain  
  0.0000000000612   300-361   Complement control module/SCR domain  
ENSMICP00000003099   7.78e-20   1987-2055   Complement control module/SCR domain  
  1.01e-18   2044-2113   Complement control module/SCR domain  
  1.35e-17   2340-2411   Complement control module/SCR domain  
  6.25e-17   2225-2293   Complement control module/SCR domain  
  6.34e-16   2282-2351   Complement control module/SCR domain  
  0.00000000000000175   2400-2465   Complement control module/SCR domain  
  0.00000000000000222   698-762   Complement control module/SCR domain  
  0.00000000000000375   2102-2175   Complement control module/SCR domain  
  0.00000000000000862   2459-2515   Complement control module/SCR domain  
  0.0000000000000208   1928-1991   Complement control module/SCR domain  
  0.000000000000089   1394-1452   Complement control module/SCR domain  
  0.00000000000012   1048-1111   Complement control module/SCR domain  
  0.000000000000128   180-240   Complement control module/SCR domain  
  0.00000000000025   1801-1862   Complement control module/SCR domain  
  0.000000000000278   523-592   Complement control module/SCR domain  
  0.000000000000278   1222-1289   Complement control module/SCR domain  
  0.000000000000958   2520-2577   Complement control module/SCR domain  
  0.00000000000216   1565-1629   Complement control module/SCR domain  
  0.00000000000391   353-413   Complement control module/SCR domain  
  0.0000000000499   1739-1807   Complement control module/SCR domain  
  0.0000000848   6-51   Complement control module/SCR domain  
  0.00000153   2168-2221   Complement control module/SCR domain  
ENSMICP00000003281   0.00000000000208   148-204   Complement control module/SCR domain  
  0.000000612   22-73   Complement control module/SCR domain  
ENSMICP00000003401   0.00000000834   331-367   Complement control module/SCR domain  
ENSMICP00000003505   8.48e-16   366-436   Complement control module/SCR domain  
  0.000278   300-338   Complement control module/SCR domain  
ENSMICP00000003936   0.000000000556   1271-1334   Complement control module/SCR domain  
  0.00000000334   1207-1279   Complement control module/SCR domain  
  0.0000000278   1146-1211   Complement control module/SCR domain  
  0.00000445   1076-1149   Complement control module/SCR domain  
ENSMICP00000004472   0.000000000297   235-296   Complement control module/SCR domain  
  0.000000000594   54-116   Complement control module/SCR domain  
  0.0000000337   115-176   Complement control module/SCR domain  
ENSMICP00000005458   0.0000000000653   1522-1596   Complement control module/SCR domain  
  0.0000153   1466-1528   Complement control module/SCR domain  
  0.0000222   1588-1645   Complement control module/SCR domain  
ENSMICP00000006041   3.64e-19   2805-2873   Complement control module/SCR domain  
  1.06e-17   3044-3112   Complement control module/SCR domain  
  2.16e-16   3220-3289   Complement control module/SCR domain  
  5.56e-16   2746-2815   Complement control module/SCR domain  
  5.94e-16   2862-2919   Complement control module/SCR domain  
  0.000000000000001   3098-3158   Complement control module/SCR domain  
  0.00000000000000175   2619-2686   Complement control module/SCR domain  
  0.00000000000000222   3279-3350   Complement control module/SCR domain  
  0.00000000000000391   2976-3038   Complement control module/SCR domain  
  0.0000000000000499   2041-2102   Complement control module/SCR domain  
  0.0000000000000903   485-545   Complement control module/SCR domain  
  0.000000000000405   999-1055   Complement control module/SCR domain  
  0.00000000000128   1343-1405   Complement control module/SCR domain  
  0.00000000000202   177-237   Complement control module/SCR domain  
  0.00000000000283   1172-1229   Complement control module/SCR domain  
  0.00000000000347   1867-1927   Complement control module/SCR domain  
  0.00000000000417   825-893   Complement control module/SCR domain  
  0.00000000000417   2691-2753   Complement control module/SCR domain  
  0.000000000031   2223-2281   Complement control module/SCR domain  
  0.0000000000731   2948-2989   Complement control module/SCR domain  
  0.00089   2557-2610   Complement control module/SCR domain  
ENSMICP00000006439   0.00000000000959   126-182   Complement control module/SCR domain  
  0.0000417   3-63   Complement control module/SCR domain  
ENSMICP00000006728   0.000000000834   3208-3265   Complement control module/SCR domain  
ENSMICP00000006748   0.00000000000000862   300-370   Complement control module/SCR domain  
ENSMICP00000007569   0.000000000334   813-872   Complement control module/SCR domain  
ENSMICP00000007674   0.000000000667   22-78   Complement control module/SCR domain  
  0.00181   168-192   Complement control module/SCR domain  
ENSMICP00000007675   1.81e-16   80-149   Complement control module/SCR domain  
ENSMICP00000007684   1e-16   172-246   Complement control module/SCR domain  
  0.000000000000391   425-487   Complement control module/SCR domain  
  0.0000000000101   482-539   Complement control module/SCR domain  
  0.000000000188   49-94,145-177   Complement control module/SCR domain  
  0.000000262   308-360   Complement control module/SCR domain  
ENSMICP00000008783   0.000000000297   41-102   Complement control module/SCR domain  
ENSMICP00000008794   0.000000000000292   1-67   Complement control module/SCR domain  
ENSMICP00000008903   0.00000000000125   142-212   Complement control module/SCR domain  
  0.0000000000264   202-262   Complement control module/SCR domain  
ENSMICP00000008908   0.00000000000000181   721-778   Complement control module/SCR domain  
ENSMICP00000009318   0.000000000000144   643-701   Complement control module/SCR domain  
  0.000000000000236   703-764   Complement control module/SCR domain  
  0.00000000000301   771-837   Complement control module/SCR domain  
  0.00000000367   289-332   Complement control module/SCR domain  
  0.0000000511   464-529   Complement control module/SCR domain  
ENSMICP00000009493   4.72e-18   3029-3100   Complement control module/SCR domain  
  1.04e-17   3089-3158   Complement control module/SCR domain  
  6.07e-17   2730-2797   Complement control module/SCR domain  
  9.45e-17   2913-2980   Complement control module/SCR domain  
  0.00000000000000167   2970-3040   Complement control module/SCR domain  
  0.00000000000000661   2056-2124   Complement control module/SCR domain  
  0.0000000000000418   1885-1945   Complement control module/SCR domain  
  0.0000000000000751   3147-3205   Complement control module/SCR domain  
  0.0000000000000769   319-379   Complement control module/SCR domain  
  0.0000000000000959   2790-2857   Complement control module/SCR domain  
  0.000000000000135   115-175   Complement control module/SCR domain  
  0.000000000000136   843-903   Complement control module/SCR domain  
  0.000000000000256   1361-1424   Complement control module/SCR domain  
  0.000000000000264   2846-2906   Complement control module/SCR domain  
  0.000000000000556   497-559   Complement control module/SCR domain  
  0.00000000000189   2226-2290   Complement control module/SCR domain  
  0.000000000005   668-736   Complement control module/SCR domain  
  0.000000000005   1711-1774   Complement control module/SCR domain  
  0.00000000000834   3268-3327   Complement control module/SCR domain  
  0.000000000031   2400-2461   Complement control module/SCR domain  
  0.00000000175   2673-2718   Complement control module/SCR domain  
  0.00000000361   2534-2588   Complement control module/SCR domain  
ENSMICP00000010446   3.15e-19   1167-1229   Complement control module/SCR domain  
  0.000000000000202   1109-1169   Complement control module/SCR domain  
  0.00000000000038   85-143   Complement control module/SCR domain  
  0.000000000000695   562-624   Complement control module/SCR domain  
  0.000000000000813   868-940   Complement control module/SCR domain  
  0.0000000000013   930-998   Complement control module/SCR domain  
  0.00000000000202   1041-1103   Complement control module/SCR domain  
  0.00000000000537   982-1043   Complement control module/SCR domain  
  0.0000000000076   689-744   Complement control module/SCR domain  
  0.000000000773   809-864   Complement control module/SCR domain  
  0.0000000197   208-264   Complement control module/SCR domain  
  0.000000419   20-70   Complement control module/SCR domain  
  0.0000017   508-572   Complement control module/SCR domain  
  0.00000183   389-443   Complement control module/SCR domain  
  0.000334   324-387   Complement control module/SCR domain  
ENSMICP00000011192   6.95e-17   311-376   Complement control module/SCR domain  
  1.95e-16   490-556   Complement control module/SCR domain  
  0.00000000000000208   373-439   Complement control module/SCR domain  
  0.000000000000005   428-494   Complement control module/SCR domain  
  0.00000000000001   552-617   Complement control module/SCR domain  
  0.000000000000103   190-256   Complement control module/SCR domain  
  0.000000000000153   629-694   Complement control module/SCR domain  
  0.00000000000153   684-749   Complement control module/SCR domain  
  0.0000959   247-307   Complement control module/SCR domain  
ENSMICP00000011200   0.0000000000000136   263-329   Complement control module/SCR domain  
  0.00000000000181   208-273   Complement control module/SCR domain  
ENSMICP00000011210   2.92e-16   302-376   Complement control module/SCR domain  
  0.0000000000000195   240-313   Complement control module/SCR domain  
  0.0000000000000334   366-439   Complement control module/SCR domain  
  0.0000000000000375   423-490   Complement control module/SCR domain  
  0.000000000000403   180-246   Complement control module/SCR domain  
  0.00000000000153   488-549   Complement control module/SCR domain  
ENSMICP00000011263   0.0000000000195   568-631   Complement control module/SCR domain  
ENSMICP00000011307   0.00000000283   596-659   Complement control module/SCR domain  
  0.000000756   651-706   Complement control module/SCR domain  
ENSMICP00000011844   0.00000000000778   565-630   Complement control module/SCR domain  
ENSMICP00000012080   7.32e-21   264-345   Complement control module/SCR domain  
  4.32e-17   83-149   Complement control module/SCR domain  
  0.000000000000351   205-267   Complement control module/SCR domain  
  0.000000000000418   140-214   Complement control module/SCR domain  
  0.00000000000769   22-93   Complement control module/SCR domain  
ENSMICP00000012338   0.0000000000715   123-183   Complement control module/SCR domain  
ENSMICP00000012460   0.0000000000000134   690-755   Complement control module/SCR domain  
  0.00000000000111   817-876   Complement control module/SCR domain  
  0.00000000000167   749-811   Complement control module/SCR domain  
  0.000000000737   343-398   Complement control module/SCR domain  
  0.000000000877   512-576   Complement control module/SCR domain  
ENSMICP00000012658   0.0000000306   101-159   Complement control module/SCR domain  
ENSMICP00000013139   2.64e-18   508-577   Complement control module/SCR domain  
  1.81e-16   759-821   Complement control module/SCR domain  
  2.92e-16   134-205   Complement control module/SCR domain  
  0.00000000000000278   392-455   Complement control module/SCR domain  
  0.00000000000000361   255-326   Complement control module/SCR domain  
  0.00000000000000364   332-402   Complement control module/SCR domain  
  0.00000000000000514   644-706   Complement control module/SCR domain  
  0.0000000000000139   893-959   Complement control module/SCR domain  
  0.0000000000000153   195-266   Complement control module/SCR domain  
  0.0000000000000222   589-653   Complement control module/SCR domain  
  0.000000000000195   947-1011   Complement control module/SCR domain  
  0.000000000000306   69-128   Complement control module/SCR domain  
  0.000000000000625   1-63   Complement control module/SCR domain  
  0.00000000000153   827-888   Complement control module/SCR domain  
  0.000000542   721-770   Complement control module/SCR domain  
  0.0000243   467-519   Complement control module/SCR domain  
ENSMICP00000014624   0.00000000000195   1847-1907   Complement control module/SCR domain  
ENSMICP00000015265   0.00000000000000848   154-218   Complement control module/SCR domain  
  0.0000000000005   33-98   Complement control module/SCR domain  
  0.00000000000167   95-169   Complement control module/SCR domain  
ENSMICP00000015314   0.0000000000114   1181-1240   Complement control module/SCR domain  
ENSMICP00000016314   0.00000000000000375   116-178   Complement control module/SCR domain  
  0.0000000000000486   263-322   Complement control module/SCR domain  
  0.0000000306   78-126   Complement control module/SCR domain  
 
Weak hits:
ENSMICP00000002537   0.00053   306-348   Complement control module/SCR domain  
ENSMICP00000002543   0.000572   190-229   Complement control module/SCR domain  
ENSMICP00000010363   0.011   32-61   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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