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  Home > Genomes > Stathmin domains in all eukaryotic genomes


Stathmin superfamily domain assignments
in
all eukaryotic genomes

Assignment details

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25 selected genomes have 156 significant domains in 155 proteins.

Showing genomes 1 to 25 of 184
  1 2 3 4 5 6 7 8   Next Last

Homo sapiens 76_38 has 19 significant domains in 19 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000220876   7.85e-58   39-174   Stathmin  
ENSP00000265770   3.4e-57   49-184   Stathmin  
ENSP00000342538   5.23e-57   76-211   Stathmin  
ENSP00000350531   5.62e-59   5-140   Stathmin  
ENSP00000359070   1.28e-51   39-175   Stathmin  
ENSP00000363409   5.62e-59   5-140   Stathmin  
ENSP00000382633   5.62e-59   5-140   Stathmin  
ENSP00000387858   5.62e-59   5-140   Stathmin  
ENSP00000407567   1.06e-37   5-86   Stathmin  
ENSP00000410452   2.09e-55   5-127   Stathmin  
ENSP00000428428   1.57e-53   76-200   Stathmin  
ENSP00000428474   8.24e-54   40-164   Stathmin  
ENSP00000429243   3.79e-55   39-163   Stathmin  
ENSP00000430102   6.28e-58   28-163   Stathmin  
ENSP00000430389   8.76e-54   76-199   Stathmin  
ENSP00000430699   6.54e-54   49-172   Stathmin  
ENSP00000439840   1.03e-51   28-164   Stathmin  
ENSP00000454363   0.000000562   140-183   Stathmin  
ENSP00000455698   0.000000955   148-191   Stathmin  
 
Weak hits:
ENSP00000346130   0.0549   11-57   Stathmin  
ENSP00000421181   0.0471   19-92   Stathmin  

Pan troglodytes 76_2.1.4 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000000653   2.09e-55   5-127   Stathmin  
ENSPTRP00000034842   3.79e-55   39-163   Stathmin  
ENSPTRP00000051938   1.28e-51   39-175   Stathmin  
ENSPTRP00000053212   4.97e-54   75-199   Stathmin  
 
Weak hits:
ENSPTRP00000038843   0.0549   11-57   Stathmin  

Gorilla gorilla 76_3.1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000003284   5.23e-57   76-211   Stathmin  
ENSGGOP00000004679   1.28e-51   39-175   Stathmin  
ENSGGOP00000004683   7.19e-58   34-169   Stathmin  
ENSGGOP00000018067   2.09e-55   5-127   Stathmin  
ENSGGOP00000021848   5.62e-59   5-140   Stathmin  
ENSGGOP00000025202   3.4e-57   49-184   Stathmin  
 
Weak hits:
ENSGGOP00000015160   0.0275   11-57   Stathmin  
ENSGGOP00000015361   0.0235   207-270   Stathmin  

Pongo abelii 76_2 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000001965   5.62e-59   5-140   Stathmin  
ENSPPYP00000012561   9.15e-50   34-171   Stathmin  
ENSPPYP00000020688   3.4e-57   49-184   Stathmin  
ENSPPYP00000020689   1.57e-53   76-200   Stathmin  
ENSPPYP00000020967   7.85e-58   39-174   Stathmin  
 
Weak hits:
ENSPPYP00000003920   0.0549   11-57   Stathmin  

Nomascus leucogenys 76_1.0 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000001255   0.00000654   148-191   Stathmin  
ENSNLEP00000002676   6.28e-58   28-163   Stathmin  
ENSNLEP00000011160   5.62e-59   5-140   Stathmin  
ENSNLEP00000012315   1.28e-51   39-175   Stathmin  
ENSNLEP00000019744   5.23e-57   76-211   Stathmin  
 
Weak hits:
ENSNLEP00000014736   0.0432   178-240   Stathmin  
ENSNLEP00000021668   0.0549   11-57   Stathmin  

Papio anubis 76 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000005185   5.62e-59   5-140   Stathmin  
ENSPANP00000008960   1.57e-53   76-200   Stathmin  
ENSPANP00000013697   0.00000157   149-192   Stathmin  
ENSPANP00000014416   1.57e-19   39-103   Stathmin  
ENSPANP00000017797   7.85e-58   39-174   Stathmin  
 
Weak hits:
ENSPANP00000003624   0.0536   11-57   Stathmin  
ENSPANP00000017372   0.0235   207-270   Stathmin  

Macaca mulatta 76_1 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000000694   7.06e-58   33-168   Stathmin  
ENSMMUP00000000881   6.15e-59   4-139   Stathmin  
ENSMMUP00000003440   0.00000157   149-192   Stathmin  
ENSMMUP00000019880   3.53e-34   7-114   Stathmin  
ENSMMUP00000024566   5.23e-57   76-211   Stathmin  
ENSMMUP00000024568   3.4e-57   49-184   Stathmin  
ENSMMUP00000028048   3.66e-19   39-97   Stathmin  
 
Weak hits:
ENSMMUP00000022590   0.034   157-219   Stathmin  
ENSMMUP00000027402   0.0549   11-57   Stathmin  
ENSMMUP00000030229   0.0759   128-167   Stathmin  
ENSMMUP00000034880   0.085   33-93   Stathmin  
ENSMMUP00000036238   0.0641   268-330   Stathmin  

Callithrix jacchus 76_3.2.1 has 15 significant domains in 15 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000000837   1.02e-57   34-169   Stathmin  
ENSCJAP00000010495   2.22e-55   5-127   Stathmin  
ENSCJAP00000011114   7.59e-57   5-140   Stathmin  
ENSCJAP00000017366   5.62e-59   5-140   Stathmin  
ENSCJAP00000018121   4.84e-57   5-140   Stathmin  
ENSCJAP00000019018   8.76e-50   39-175   Stathmin  
ENSCJAP00000019025   1.83e-51   28-164   Stathmin  
ENSCJAP00000036934   1.57e-53   76-200   Stathmin  
ENSCJAP00000036935   5.23e-57   76-211   Stathmin  
ENSCJAP00000043983   2.09e-51   36-172   Stathmin  
ENSCJAP00000044261   5.62e-59   5-140   Stathmin  
ENSCJAP00000045856   2.35e-53   39-163   Stathmin  
ENSCJAP00000046483   5.62e-59   5-140   Stathmin  
ENSCJAP00000047754   1.28e-53   76-198   Stathmin  
ENSCJAP00000048784   8.24e-54   40-164   Stathmin  
 
Weak hits:
ENSCJAP00000004953   0.00915   361-412   Stathmin  
ENSCJAP00000010214   0.0248   209-272   Stathmin  
ENSCJAP00000017187   0.0222   123-185   Stathmin  
ENSCJAP00000017450   0.0615   58-112   Stathmin  
ENSCJAP00000044874   0.0085   338-389   Stathmin  
ENSCJAP00000048977   0.000379   133-167   Stathmin  

Otolemur garnettii 76_3 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000001885   5.62e-59   5-140   Stathmin  
ENSOGAP00000009444   3.4e-57   49-184   Stathmin  
ENSOGAP00000018340   0.00000379   127-188   Stathmin  
ENSOGAP00000020040   1.02e-51   39-175   Stathmin  
ENSOGAP00000020556   7.98e-58   40-175   Stathmin  
 
Weak hits:
ENSOGAP00000004405   0.0235   205-268   Stathmin  
ENSOGAP00000017855   0.0275   53-122   Stathmin  
ENSOGAP00000018736   0.0157   265-328   Stathmin  

Microcebus murinus 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000006146   2.09e-29   90-168   Stathmin  
ENSMICP00000009307   6.93e-29   1-78   Stathmin  
ENSMICP00000011177   5.23e-57   76-211   Stathmin  
 
Weak hits:
ENSMICP00000008681   0.0209   55-122   Stathmin  

Rattus norvegicus 76_5.0 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000012366   4.71e-54   49-173   Stathmin  
ENSRNOP00000015720   1.96e-57   39-174   Stathmin  
ENSRNOP00000018697   8.24e-45   39-178   Stathmin  
ENSRNOP00000022574   6.41e-59   5-140   Stathmin  
ENSRNOP00000046185   0.0000811   151-194   Stathmin  
ENSRNOP00000046963   5.49e-44   12-141   Stathmin  
ENSRNOP00000055733   3.44e-57   49-184   Stathmin  
ENSRNOP00000055734   5.23e-57   76-211   Stathmin  
 
Weak hits:
ENSRNOP00000052878   0.0445   12-64   Stathmin  

Mus musculus 76_38 has 11 significant domains in 11 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000029002   7.85e-58   39-174   Stathmin  
ENSMUSP00000030636   4.84e-59   5-140   Stathmin  
ENSMUSP00000074113   3.44e-57   49-184   Stathmin  
ENSMUSP00000075923   0.0000262   133-194   Stathmin  
ENSMUSP00000099334   2.62e-51   39-175   Stathmin  
ENSMUSP00000101493   1.83e-55   5-129   Stathmin  
ENSMUSP00000101494   4.84e-59   5-140   Stathmin  
ENSMUSP00000113629   9.81e-54   49-173   Stathmin  
ENSMUSP00000113759   5.23e-57   76-211   Stathmin  
ENSMUSP00000113788   1.57e-53   76-200   Stathmin  
ENSMUSP00000119547   6.67e-46   5-101   Stathmin  
 
Weak hits:
ENSMUSP00000136847   0.0994   81-117   Stathmin  

Dipodomys ordii 76_1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000001682   9.15e-29   58-137   Stathmin  
ENSDORP00000005595   4.58e-58   39-174   Stathmin  
ENSDORP00000006482   2.62e-51   39-175   Stathmin  
ENSDORP00000009650   5.23e-57   76-211   Stathmin  
 
Weak hits:
ENSDORP00000006060   0.00248   144-230   Stathmin  
ENSDORP00000006342   0.0628   55-121   Stathmin  

Ictidomys tridecemlineatus 76_2 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000006097   2.48e-51   37-173   Stathmin  
ENSSTOP00000006428   5.23e-57   76-211   Stathmin  
ENSSTOP00000015739   2.48e-57   1-135   Stathmin  
ENSSTOP00000020557   0.0000209   133-192   Stathmin  
ENSSTOP00000021801   5.75e-59   5-140   Stathmin  
 
Weak hits:
ENSSTOP00000009527   0.0942   127-169   Stathmin  
ENSSTOP00000014870   0.0589   267-330   Stathmin  
ENSSTOP00000019929   0.00235   17-81   Stathmin  

Heterocephalus glaber v1.7-2 has 8 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000220876-2   6.28e-58   28-163   Stathmin  
HGL_H00000220876-3   0.0000235   2-93   Stathmin  
HGL_H00000342538   3.92e-53   92-214   Stathmin  
HGL_H00000359070   2.09e-27   186-263   Stathmin  
  5.36e-18   94-153   Stathmin  
HGL_H00000410452-1   2.22e-58   85-220   Stathmin  
HGL_H00000410452-2   3.4e-52   5-137   Stathmin  
HGL_H00000410452-3   3.14e-53   5-139   Stathmin  
 
Weak hits:
HGL_M00000075923   0.000235   219-252   Stathmin  

Cavia porcellus 76_3 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000004978   3.4e-57   49-184   Stathmin  
ENSCPOP00000009398   7.85e-58   39-174   Stathmin  
ENSCPOP00000009955   4.32e-59   5-140   Stathmin  
ENSCPOP00000014232   9.29e-51   39-175   Stathmin  
ENSCPOP00000014915   4.45e-25   36-124   Stathmin  
 
Weak hits:
ENSCPOP00000005320   0.0418   88-129   Stathmin  

Oryctolagus cuniculus 76_2 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000005611   5.36e-59   4-139   Stathmin  
ENSOCUP00000006618   1.57e-53   76-200   Stathmin  
ENSOCUP00000006921   4.32e-59   5-140   Stathmin  
ENSOCUP00000020391   7.85e-58   39-174   Stathmin  
 
Weak hits:
ENSOCUP00000001221   0.0235   207-270   Stathmin  
ENSOCUP00000026511   0.000955   146-192   Stathmin  

Ochotona princeps 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000001238   4.18e-59   4-139   Stathmin  
ENSOPRP00000014491   1.28e-54   32-153   Stathmin  
ENSOPRP00000016219   6.54e-49   39-175   Stathmin  
 
Weak hits:
ENSOPRP00000002213   0.0327   54-80   Stathmin  
ENSOPRP00000009906   0.0209   360-413   Stathmin  

Tupaia belangeri 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTBEP00000006296   4.84e-57   71-206   Stathmin  
ENSTBEP00000009816   3.01e-29   5-122   Stathmin  
ENSTBEP00000012248   1.09e-41   33-151   Stathmin  
 
Weak hits:
ENSTBEP00000000433   0.0196   202-253   Stathmin  
ENSTBEP00000007018   0.0445   363-409   Stathmin  
ENSTBEP00000012237   0.0222   197-260   Stathmin  

Sus scrofa 76_10.2 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000001138   0.000034   132-193   Stathmin  
ENSSSCP00000006571   7.19e-58   34-169   Stathmin  
ENSSSCP00000010318   3.4e-57   49-184   Stathmin  
ENSSSCP00000021642   5.62e-59   5-140   Stathmin  
ENSSSCP00000024840   3.4e-57   49-184   Stathmin  
ENSSSCP00000029097   7.85e-58   39-174   Stathmin  
ENSSSCP00000029505   0.00000000000602   39-82   Stathmin  
ENSSSCP00000029709   4.05e-45   28-125   Stathmin  
ENSSSCP00000031032   7.85e-58   39-174   Stathmin  
 
Weak hits:
ENSSSCP00000011788   0.034   268-330   Stathmin  
ENSSSCP00000016841   0.0235   207-270   Stathmin  

Bos taurus 76_3.1 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000018284   5.62e-59   5-140   Stathmin  
ENSBTAP00000023448   3.4e-57   49-184   Stathmin  
ENSBTAP00000026776   7.85e-58   39-174   Stathmin  
ENSBTAP00000048555   1.44e-51   39-175   Stathmin  
ENSBTAP00000052803   1.57e-43   5-132   Stathmin  
 
Weak hits:
ENSBTAP00000027394   0.00107   127-189   Stathmin  
ENSBTAP00000039624   0.0602   363-414   Stathmin  

Ovis aries 76_3.1 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOARP00000006179   5.62e-59   5-140   Stathmin  
ENSOARP00000008534   7.85e-58   39-174   Stathmin  
ENSOARP00000010440   3.4e-57   49-184   Stathmin  
ENSOARP00000011325   1.44e-51   39-175   Stathmin  
ENSOARP00000013167   2.35e-45   6-137   Stathmin  
 
Weak hits:
ENSOARP00000001022   0.0327   363-415   Stathmin  
ENSOARP00000007172   0.0235   203-266   Stathmin  
ENSOARP00000007173   0.0235   206-269   Stathmin  
ENSOARP00000007901   0.0183   267-329   Stathmin  
ENSOARP00000012887   0.000248   132-194   Stathmin  

Vicugna pacos 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSVPAP00000001131   5.62e-59   5-140   Stathmin  
ENSVPAP00000002125   7.85e-58   39-174   Stathmin  
ENSVPAP00000002555   5.1e-53   75-196   Stathmin  
 
Weak hits:
ENSVPAP00000001667   0.0641   162-243   Stathmin  
ENSVPAP00000002515   0.0222   191-254   Stathmin  

Tursiops truncatus 76_1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTTRP00000000076   7.85e-58   39-174   Stathmin  
ENSTTRP00000003000   5.23e-57   76-211   Stathmin  
ENSTTRP00000011577   6.02e-51   31-167   Stathmin  
ENSTTRP00000011853   5.62e-59   5-140   Stathmin  
 
Weak hits:
ENSTTRP00000006276   0.0222   191-254   Stathmin  

Mustela putorius furo 76_1.0 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMPUP00000000867   1.57e-53   76-200   Stathmin  
ENSMPUP00000001848   6.41e-50   32-173   Stathmin  
ENSMPUP00000008366   1.96e-51   39-175   Stathmin  
ENSMPUP00000015665   5.62e-59   5-140   Stathmin  
ENSMPUP00000019817   3.01e-57   39-174   Stathmin  
 
Weak hits:
ENSMPUP00000000951   0.017   53-122   Stathmin  
ENSMPUP00000005326   0.0209   130-190   Stathmin  
ENSMPUP00000009931   0.0209   363-414   Stathmin  

  1 2 3 4 5 6 7 8   Next Last
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Select to display   Genome       Domains   Proteins
No Yes ALL   5549 5549
No Yes Homo sapiens 76_38 Human 19 19
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 4 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 6 6
No Yes Pongo abelii 76_2 Sumatran orangutan 5 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 5 5
No Yes Papio anubis 76 Olive baboon 5 5
No Yes Macaca mulatta 76_1 Rhesus monkey 7 7
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 15 15
No Yes Otolemur garnettii 76_3 Small-eared galago 5 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 3 3
No Yes Rattus norvegicus 76_5.0 Norway rat 8 8
No Yes Mus musculus 76_38 House mouse 11 11
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 5 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 8 7
No Yes Cavia porcellus 76_3 Domestic guinea pig 5 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 4 4
No Yes Ochotona princeps 76 American pika 3 3
No Yes Tupaia belangeri 76 Northern tree shrew 3 3
No Yes Sus scrofa 76_10.2 Pig 9 9
No Yes Bos taurus 76_3.1 Cattle 5 5
No Yes Ovis aries 76_3.1 Sheep 5 5
No Yes Vicugna pacos 76_1 Alpaca 3 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 4 4
No Yes Mustela putorius furo 76_1.0 Domestic ferret 5 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 4 4
No Yes Canis familiaris 76_3.1 Dog 6 6
No Yes Felis catus 76_6.2 Domestic cat 5 5
No Yes Equus caballus 76_2 Horse 4 4
No Yes Myotis lucifugus 76_2.0 Little brown bat 4 4
No Yes Pteropus vampyrus 76_1 Large flying fox 4 4
No Yes Sorex araneus 76_1 European shrew 4 4
No Yes Erinaceus europaeus 76 Western European hedgehog 3 3
No Yes Procavia capensis 76_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 76_3 African savanna elephant 7 7
No Yes Echinops telfairi 76 Small Madagascar hedgehog 3 3
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 8 8
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 3 3
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 4 4
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 4 4
No Yes Ornithorhynchus anatinus 76_5 Platypus 4 4
No Yes Saccoglossus kowalevskii v3.0   3 3
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 4 4
No Yes Gallus gallus 76_4 Chicken 4 4
No Yes Anas platyrhynchos 76_1.0 Mallard 6 6
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 7 7
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 5 5
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 4 4
No Yes Anolis carolinensis 76_2.0 Green anole 3 3
No Yes Xenopus laevis African clawed frog 30 30
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 6 6
No Yes Latimeria chalumnae 76_1 Coelacanth 6 6
No Yes Lepisosteus oculatus 76 Spotted gar 7 7
No Yes Gadus morhua 76_1 Atlantic cod 5 5
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 8 8
No Yes Takifugu rubripes 76_4 Torafugu 9 9
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 76_1 Japanese medaka 5 5
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 6 6
No Yes Poecilia formosa 76 Amazon molly 7 7
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 6 6
No Yes Astyanax mexicanus 76 Mexican tetra 8 8
No Yes Danio rerio 76_9 Zebrafish 13 13
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 3
No Yes Adineta vaga   4 4
No Yes Octopus bimaculoides 280   4 2
No Yes Crassostrea gigas 22 Pacific oyster 7 4
No Yes Lottia gigantea Owl limpet 7 7
No Yes Helobdella robusta   5 3
No Yes Capitella sp. I   3 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 2 2
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 5 5
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 6 6
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   2 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Trichinella spiralis 22   1 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   2 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 2
No Yes Hydra vulgaris   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 9 9
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 4 4
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 19 19
No Yes Homo sapiens (NCBI version) Human 9 9
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 5 5
No Yes Heliconius numata (Incomplete)   1 1
No Yes Homo sapiens 69_37 Human 5 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 4 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 4 4
No Yes Pongo abelii 69_2 Sumatran orangutan 4 4
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 5 5
No Yes Macaca mulatta 69_1 Rhesus monkey 6 6
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 6 6
No Yes Otolemur garnettii 69_3 Small-eared galago 5 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 3 3
No Yes Rattus norvegicus 69_3.4 Norway rat 5 5
No Yes Mus musculus 69_38 House mouse 5 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 5 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 5 5
No Yes Oryctolagus cuniculus 69_2 Rabbit 4 4
No Yes Ochotona princeps 69 American pika 3 3
No Yes Tupaia belangeri 69 Northern tree shrew 3 3
No Yes Sus scrofa 69_10.2 Pig 5 5
No Yes Bos taurus 69_3.1 Cattle 5 5
No Yes Vicugna pacos 69_1 Alpaca 3 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 4 4
No Yes Mustela putorius furo 69_1.0 Domestic ferret 5 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 4 4
No Yes Canis familiaris 69_3.1 Dog 4 4
No Yes Felis catus 69 Domestic cat 3 3
No Yes Equus caballus 69_2 Horse 4 4
No Yes Myotis lucifugus 69_2.0 Little brown bat 4 4
No Yes Pteropus vampyrus 69_1 Large flying fox 4 4
No Yes Sorex araneus 69_1 European shrew 4 4
No Yes Erinaceus europaeus 69 Western European hedgehog 3 3
No Yes Procavia capensis 69_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 69_3 African savanna elephant 6 6
No Yes Echinops telfairi 69 Small Madagascar hedgehog 3 3
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 3 3
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 4 4
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 4 4
No Yes Ornithorhynchus anatinus 69_5 Platypus 4 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 69_2 Turkey 4 4
No Yes Gallus gallus 69_2 Chicken 4 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 7 7
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 4 4
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 5 5
No Yes Latimeria chalumnae 69_1 Coelacanth 4 4
No Yes Gadus morhua 69_1 Atlantic cod 5 5
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 6 6
No Yes Takifugu rubripes 69_4 Torafugu 6 6
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 6 6
No Yes Oryzias latipes 69_1 Japanese medaka 4 4
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 6 6
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 6 6
No Yes Danio rerio 69_9 Zebrafish 7 7
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes NCBI 2017_08 genome   2633 2548
No Yes STRING v9.0.5 (STRING)   148 147
No Yes Uniprot 2018_03 genome   1397 1361
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   106 105
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   128 127
No Yes TargetDB (Targets)   5 5

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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