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Alginate lyase family domain assignments
in
all genomes

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25 selected genomes have 39 significant domains in 39 proteins.

Showing genomes 1 to 25 of 77
  1 2 3 4   Next Last

Naegleria gruberi has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Naegr1|66146|fgeneshNG_pg.scaffold_17000059   2.06e-40   0.00000933   25-250   1uai A:  
jgi|Naegr1|68135|fgeneshNG_pg.scaffold_27000014   7.91e-33   0.00000824   28-254   1uai A:  
jgi|Naegr1|71919|fgeneshNG_pg.scaffold_50000007   2.37e-35   0.0000168   26-235   1uai A:  
 
Weak hits:
jgi|Naegr1|58267|estExt_fgeneshHS_pg.C_290012   0.00000758   0.081   3305-3459   1uai A:  

Catenulispora acidiphila DSM 44928 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|256390804|ref|YP_003112368.1|   3.21e-59   0.0000561   56-274   1vav A:  
gi|256396593|ref|YP_003118157.1|   7.75e-52   0.000031   198-417   1vav A:  
 
Weak hits:
gi|256393429|ref|YP_003114993.1|   0.00000271   0.056   251-381   1uai A:  
gi|256396047|ref|YP_003117611.1|   0.00253   0.076   357-501   1vav A:  

Stackebrandtia nassauensis DSM 44728 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|291300817|ref|YP_003512095.1|   5.07e-60   0.00000022   37-256   1uai A:  

Streptomyces coelicolor A3(2) has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|21221919|ref|NP_627698.1|   4.3e-71   0.00000000652   38-259   1uai A:  
 
Weak hits:
gi|21221019|ref|NP_626798.1|   0.0000633   0.0088   36-120   1uai A:  

Streptomyces bingchenggensis BCW-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|374984358|ref|YP_004959853.1|   2.48e-61   0.0000000673   41-260   1uai A:  
 
Weak hits:
gi|374983687|ref|YP_004959182.1|   0.0000000522   0.062   59-205   1uai A:  
gi|374985509|ref|YP_004961004.1|   0.00000918   0.051   63-208   1uai A:  
gi|374985510|ref|YP_004961005.1|   0.0000407   0.013   86-181   1uai A:  

Streptomyces violaceusniger Tu 4113 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|345012424|ref|YP_004814778.1|   1.42e-54   0.000000223   46-265   1uai A:  
gi|345014868|ref|YP_004817222.1|   3.88e-58   0.000056   46-263   1vav A:  
 
Weak hits:
gi|345010203|ref|YP_004812557.1|   0.000066   0.0097   97-181   1uai A:  
gi|345010204|ref|YP_004812558.1|   0.0000132   0.053   54-204   1uai A:  

Streptomyces avermitilis MA-4680 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|29827343|ref|NP_821977.1|   1.35e-60   0.0000683   66-284   1vav A:  

Streptomyces hygroscopicus subsp. jinggangensis 5008 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386844320|ref|YP_006249378.1|   8.11e-61   0.0000671   40-257   1vav A:  

Amycolatopsis mediterranei U32 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|300785992|ref|YP_003766283.1|   4.35e-58   0.0000507   36-254   1vav A:  
 
Weak hits:
gi|300785327|ref|YP_003765618.1|   0.00449   0.023   73-182   1uai A:  
gi|300788733|ref|YP_003769024.1|   0.00127   0.09   138-212   1uai A:  

Kribbella flavida DSM 17836 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|284029470|ref|YP_003379401.1|   8.31e-61   0.000000131   182-398   1uai A:  

Niastella koreensis GR20-10 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|375148419|ref|YP_005010860.1|   3.01e-49   0.00000101   28-250   1uai A:  
 
Weak hits:
gi|375147345|ref|YP_005009786.1|   0.0000000000412   0.039   68-210   1uai A:  

Cellulophaga algicola DSM 14237 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|319954424|ref|YP_004165691.1|   5.38e-27   0.0001   400-633   1uai A:  
 
Weak hits:
gi|319954425|ref|YP_004165692.1|   4.51e-25   0.00013   82-314   1uai A:  
gi|319955072|ref|YP_004166339.1|   1.58e-23   0.0093   70-246,289-316   1vav A:  
gi|319955439|ref|YP_004166706.1|   0.0000002   0.044   91-242   1vav A:  
gi|319955688|ref|YP_004166955.1|   2.37e-31   0.0013   54-305   1vav A:  

Rhodopirellula baltica SH 1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|32472610|ref|NP_865604.1|   7.12e-52   0.0000154   26-236   1uai A:  

Arcobacter nitrofigilis DSM 7299 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|296273639|ref|YP_003656270.1|   7.91e-39   0.0000256   19-230   1j1t A:  

Burkholderia gladioli BSR3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|330817074|ref|YP_004360779.1|   7.68e-42   0.0000904   57-259   1vav A:  
 
Weak hits:
gi|330819638|ref|YP_004348500.1|   6.09e-46   0.00087   67-278   1vav A:  
gi|330821663|ref|YP_004350525.1|   1.03e-46   0.0011   52-264   1vav A:  

Saccharophagus degradans 2-40 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|90021154|ref|YP_526981.1|   1.42e-50   0.0000161   634-871   1uai A:  
gi|90022912|ref|YP_528739.1|   3.38e-135   0.000000085   325-552   1j1t A:  
 
Weak hits:
gi|90022123|ref|YP_527950.1|   1.19e-62   0.00034   255-524   1vav A:  
gi|90022192|ref|YP_528019.1|   1.58e-61   0.00037   345-611   1vav A:  
gi|90022481|ref|YP_528308.1|   6.09e-51   0.0017   45-360   1uai A:  
gi|90022515|ref|YP_528342.1|   2.61e-56   0.00051   806-1071   1vav A:  
gi|90022926|ref|YP_528753.1|   1.11e-55   0.00071   82-337   1vav A:  

Tolumonas auensis DSM 9187 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|237808167|ref|YP_002892607.1|   1.58e-46   0.0000847   29-247   1vav A:  

Alteromonas sp. SN2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|333894762|ref|YP_004468637.1|   2.43e-72   0.00000068   317-535   1j1t A:  
 
Weak hits:
gi|333891881|ref|YP_004465756.1|   1.42e-43   0.003   36-349   1vav A:  
gi|333893420|ref|YP_004467295.1|   2.93e-41   0.0063   50-365   1uai A:  

Azotobacter vinelandii DJ has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|226944485|ref|YP_002799558.1|   4.11e-57   0.0000729   2-223   1vav A:  
gi|226945246|ref|YP_002800319.1|   6.09e-57   0.0000425   2-217   1vav A:  
 
Weak hits:
gi|226943500|ref|YP_002798573.1|   1.79e-44   0.00065   1-184   1vav A:  

Pseudomonas sp. TKP has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|568142788|ref|YP_008935373.1|   6.09e-69   0.00000224   2-220   1vav A:  

Pseudomonas sp. UW4 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|426411956|ref|YP_007032055.1|   4.51e-71   0.00000315   2-221   1vav A:  

Pseudomonas brassicacearum subsp. brassicacearum NFM421 has 4 significant domains in 4 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|330810413|ref|YP_004354875.1|   3.17e-59   0.0000061   2-217   1vav A:  
gi|330812292|ref|YP_004356754.1|   1.11e-69   0.0000025   2-220   1vav A:  
gi|330812293|ref|YP_004356755.1|   3.24e-66   0.00000248   2-220   1vav A:  
gi|330812294|ref|YP_004356756.1|   2.61e-67   0.00000312   2-221   1vav A:  

Pseudomonas syringae pv. tomato str. DC3000 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|28870765|ref|NP_793384.1|   2.37e-71   0.00000245   2-218   1vav A:  
gi|28872129|ref|NP_794748.1|   8.71e-74   0.00000279   2-221   1vav A:  

Pseudomonas protegens Pf-5 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|346643288|ref|YP_262838.2|   4.11e-74   0.00000253   2-221   1vav A:  
 
Weak hits:
gi|70730785|ref|YP_260526.1|   9.5e-55   0.00096   3-223   1vav A:  
gi|70732066|ref|YP_261822.1|   2.22e-53   0.00069   4-223   1vav A:  

Pseudomonas mendocina ymp has 5 significant domains in 5 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|146305500|ref|YP_001185965.1|   7.28e-64   0.00000367   2-219   1vav A:  
gi|146306697|ref|YP_001187162.1|   3.32e-57   0.0000078   2-225   1vav A:  
gi|146307130|ref|YP_001187595.1|   1.19e-64   0.00000268   2-228   1vav A:  
gi|146307605|ref|YP_001188070.1|   7.91e-41   0.0000833   46-278   1vav A:  
gi|146308078|ref|YP_001188543.1|   4.59e-62   0.0000026   20-236   1vav A:  

  1 2 3 4   Next Last
Showing genomes 1 to 25 of 77

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Select to display   Genome       Domains   Proteins
No Yes ALL   8382 8382
No Yes Naegleria gruberi   3 3
No Yes Catenulispora acidiphila DSM 44928   2 2
No Yes Stackebrandtia nassauensis DSM 44728   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   2 2
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Saccharophagus degradans 2-40   2 2
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   4 4
No Yes Pseudomonas syringae pv. tomato str. DC3000   2 2
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas mendocina ymp   5 5
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 2
No Yes Frankia sp. EuI1c   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas denitrificans ATCC 13867   2 2
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 2
No Yes Pseudomonas syringae pv. syringae B728a   2 2
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   3 3
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   2 2
No Yes Pseudomonas mendocina NK-01   2 2
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   2 2
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   2 2
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   2 2
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   7009 7009
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   31 31
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   6 6
No Yes Uniprot 2018_03 genome   1147 1145
No Yes Global Ocean Sampling Expedition (GOS)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   18 18

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