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Alginate lyase family domain assignments
in
all eukaryotic genomes

Assignment details

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Naegleria gruberi has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Naegr1|66146|fgeneshNG_pg.scaffold_17000059   2.06e-40   0.00000933   25-250   1uai A:  
jgi|Naegr1|68135|fgeneshNG_pg.scaffold_27000014   7.91e-33   0.00000824   28-254   1uai A:  
jgi|Naegr1|71919|fgeneshNG_pg.scaffold_50000007   2.37e-35   0.0000168   26-235   1uai A:  
 
Weak hits:
jgi|Naegr1|58267|estExt_fgeneshHS_pg.C_290012   0.00000758   0.081   3305-3459   1uai A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   8382 8382
No Yes Naegleria gruberi   3 3
No Yes Catenulispora acidiphila DSM 44928   2 2
No Yes Stackebrandtia nassauensis DSM 44728   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   2 2
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Saccharophagus degradans 2-40   2 2
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   4 4
No Yes Pseudomonas syringae pv. tomato str. DC3000   2 2
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas mendocina ymp   5 5
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 2
No Yes Frankia sp. EuI1c   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas denitrificans ATCC 13867   2 2
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 2
No Yes Pseudomonas syringae pv. syringae B728a   2 2
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   3 3
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   2 2
No Yes Pseudomonas mendocina NK-01   2 2
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   2 2
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   2 2
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   2 2
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   7009 7009
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   31 31
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   6 6
No Yes Uniprot 2018_03 genome   1147 1145
No Yes Global Ocean Sampling Expedition (GOS)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   18 18

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