SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > PDB chains (SCOP 1.75) > Hypothetical protein Ta0289 C-terminal domain domains


Hypothetical protein Ta0289 C-terminal domain superfamily domain assignments
in
PDB chains (SCOP 1.75)

Network of domain occurrence in all genomes

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
1pvmA   9.52e-20   149-184   Hypothetical protein Ta0289 C-terminal domain  
2qh1A   1.1e-19   163-198   Hypothetical protein Ta0289 C-terminal domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Hypothetical protein Ta0289 C-terminal domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   45 45
No Yes Thermoplasma volcanium GSS1   1 1
No Yes Thermoplasma acidophilum DSM 1728   1 1
No Yes NCBI 2017_08 genome   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   2 2
No Yes Uniprot 2018_03 genome   15 15
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   10 10
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.