Select to display Genome Domains Proteins No ALL 81596 81596 Yes Homo sapiens 76_38 Human 36 13 Yes Pan troglodytes 76_2.1.4 Chimpanzee 14 5 Yes Gorilla gorilla 76_3.1 Western gorilla 14 5 Yes Pongo abelii 76_2 Sumatran orangutan 15 5 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 14 5 Yes Papio anubis 76 Olive baboon 15 5 Yes Macaca mulatta 76_1 Rhesus monkey 17 6 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 34 13 Yes Otolemur garnettii 76_3 Small-eared galago 15 5 Yes Microcebus murinus 76_1 Gray mouse lemur 10 4 Yes Rattus norvegicus 76_5.0 Norway rat 15 5 Yes Mus musculus 76_38 House mouse 18 7 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 11 5 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 15 5 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 5 Yes Cavia porcellus 76_3 Domestic guinea pig 14 5 Yes Oryctolagus cuniculus 76_2 Rabbit 12 4 Yes Ochotona princeps 76 American pika 9 5 Yes Tupaia belangeri 76 Northern tree shrew 11 4 Yes Sus scrofa 76_10.2 Pig 21 8 Yes Bos taurus 76_3.1 Cattle 15 5 Yes Ovis aries 76_3.1 Sheep 14 6 Yes Vicugna pacos 76_1 Alpaca 5 2 Yes Tursiops truncatus 76_1 Bottlenose dolphin 15 5 Yes Mustela putorius furo 76_1.0 Domestic ferret 15 5 Yes Ailuropoda melanoleuca 76_1 Giant panda 17 6 Yes Canis familiaris 76_3.1 Dog 18 6 Yes Felis catus 76_6.2 Domestic cat 15 5 Yes Equus caballus 76_2 Horse 15 5 Yes Myotis lucifugus 76_2.0 Little brown bat 15 5 Yes Pteropus vampyrus 76_1 Large flying fox 11 5 Yes Sorex araneus 76_1 European shrew 11 4 Yes Erinaceus europaeus 76 Western European hedgehog 11 4 Yes Procavia capensis 76_1 Cape rock hyrax 14 5 Yes Loxodonta africana 76_3 African savanna elephant 21 7 Yes Echinops telfairi 76 Small Madagascar hedgehog 11 4 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 12 4 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 7 3 Yes Macropus eugenii 76_1.0 Tammar wallaby 11 4 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 18 6 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 15 5 Yes Ornithorhynchus anatinus 76_5 Platypus 8 4 Yes Saccoglossus kowalevskii v3.0 14 4 Yes Petromyzon marinus 76_7.0 Sea lamprey 9 4 Yes Meleagris gallopavo 76_2 Turkey 11 4 Yes Gallus gallus 76_4 Chicken 12 4 Yes Anas platyrhynchos 76_1.0 Mallard 12 5 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 15 6 Yes Ficedula albicollis 76_1.0 Collared flycatcher 15 5 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 21 8 Yes Anolis carolinensis 76_2.0 Green anole 14 5 Yes Xenopus laevis African clawed frog 36 12 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 12 5 Yes Latimeria chalumnae 76_1 Coelacanth 15 5 Yes Lepisosteus oculatus 76 Spotted gar 20 7 Yes Gadus morhua 76_1 Atlantic cod 24 8 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 18 6 Yes Takifugu rubripes 76_4 Torafugu 63 21 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 27 9 Yes Oryzias latipes 76_1 Japanese medaka 31 11 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 22 8 Yes Poecilia formosa 76 Amazon molly 27 9 Yes Oreochromis niloticus 76_1.0 Nile tilapia 30 10 Yes Astyanax mexicanus 76 Mexican tetra 23 8 Yes Danio rerio 76_9 Zebrafish 43 15 Yes Oikopleura dioica 5 3 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 29 10 Yes Ciona intestinalis 76 Vase tunicate 11 4 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 17 8 Yes Octopus bimaculoides 280 5 2 Yes Crassostrea gigas 22 Pacific oyster 5 2 Yes Lottia gigantea Owl limpet 3 1 Yes Helobdella robusta 4 3 Yes Capitella sp. I 10 4 Yes Danaus plexippus OGS1.0 Monarch butterfly 3 1 Yes Heliconius melpomene Postman butterfly 3 1 Yes Bombyx mori Domestic silkworm 3 1 Yes Nasonia vitripennis Jewel wasp 3 1 Yes Apis mellifera 38.2d (Not maintained) Honey bee 6 2 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 1 Yes Linepithema humile v1.1 Argentine ant 3 1 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 3 1 Yes Solenopsis invicta v.2.2.3 Red fire ant 3 1 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 3 1 Yes Atta cephalotes v1.1 3 1 Yes Camponotus floridanus v3.3 Florida carpenter ant 3 1 Yes Lucilia cuprina Australian sheep blowfly 10 2 Yes Drosophila grimshawi 1.3 4 2 Yes Drosophila willistoni 1.3 4 2 Yes Drosophila pseudoobscura 2.13 3 1 Yes Drosophila persimilis 1.3 3 1 Yes Drosophila suzukii 4 2 Yes Drosophila yakuba 1.3 3 1 Yes Drosophila simulans 1.3 3 1 Yes Drosophila sechellia 1.3 3 1 Yes Drosophila melanogaster 76_5 Fruit fly 8 3 Yes Drosophila erecta 1.3 3 1 Yes Drosophila ananassae 1.3 3 1 Yes Drosophila virilis 1.2 4 2 Yes Drosophila mojavensis 1.3 3 1 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 6 2 Yes Culex pipiens quinquefasciatus Southern house mosquito 18 6 Yes Anopheles darlingi 22 American malaria mosquito 5 2 Yes Anopheles gambiae 49_3j African malaria mosquito 3 1 Yes Tribolium castaneum 3.0 Red flour beetle 3 1 Yes Pediculus humanus corporis Human body louse 3 1 Yes Acyrthosiphon pisum Pea aphid 3 1 Yes Rhodnius prolixus 22 3 1 Yes Daphnia pulex Common water flea 4 2 Yes Strigamia maritima 22 3 1 Yes Sarcoptes scabiei 3 1 Yes Tetranychus urticae Two-spotted spider mite 3 1 Yes Ixodes scapularis Black-legged tick 3 1 Yes Hymenolepis microstoma 8 1 Yes Echinococcus multilocularis 9 1 Yes Echinococcus granulosus 9 1 Yes Taenia solium Pork tapeworm 9 1 Yes Schistosoma mansoni 4 3 Yes Mnemiopsis leidyi Sea walnut 3 2 Yes Acropora digitifera v1.0 16 7 Yes Nematostella vectensis 1.0 Starlet sea anemone 13 6 Yes Hydra vulgaris 6 2 Yes Amphimedon queenslandica 2 1 Yes Trichoplax adhaerens 3 1 Yes Proterospongia sp. ATCC 50818 3 3 Yes Monosiga brevicollis 1 1 Yes Tuber melanosporum Mel28 22 1 1 Yes Tuber melanosporum Vittad Perigord truffle 1 1 Yes Ectocarpus siliculosus 1 1 Yes Aureococcus anophagefferens 1 1 Yes Phytophthora capsici 1 1 Yes Symbiodinium minutum clade B1 v1.2 12 3 Yes Guillardia theta CCMP2712 v1.0 7 1 Yes Emiliania huxleyi CCMP1516 1 1 Yes Nostoc sp. PCC 7107 1 1 Yes Conexibacter woesei DSM 14684 1 1 Yes Blastococcus saxobsidens DD2 1 1 Yes Stackebrandtia nassauensis DSM 44728 3 3 Yes Frankia sp. EAN1pec 1 1 Yes Streptosporangium roseum DSM 43021 1 1 Yes Nocardioides sp. JS614 1 1 Yes Propionibacterium propionicum F0230a 1 1 Yes Propionibacterium acnes SK137 3 3 Yes Microlunatus phosphovorus NM-1 5 2 Yes Verrucosispora maris AB-18-032 2 2 Yes Micromonospora sp. L5 2 2 Yes Micromonospora aurantiaca ATCC 27029 2 2 Yes Actinoplanes sp. N902-109 1 1 Yes Actinoplanes sp. SE50/110 1 1 Yes Actinoplanes missouriensis 431 1 1 Yes Gordonia sp. KTR9 3 3 Yes Gordonia bronchialis DSM 43247 2 2 Yes Nocardia cyriacigeorgica GUH-2 1 1 Yes Mycobacterium abscessus ATCC 19977 2 1 Yes Mycobacterium sp. JLS 1 1 Yes Mycobacterium intracellulare ATCC 13950 2 1 Yes Mycobacterium avium 104 2 1 Yes Mycobacterium vanbaalenii PYR-1 2 1 Yes Mycobacterium canettii CIPT 140010059 2 1 Yes Mycobacterium africanum GM041182 2 1 Yes Mycobacterium tuberculosis KZN 1435 2 1 Yes Mycobacterium tuberculosis 2 1 Yes Mycobacterium bovis BCG str. Pasteur 1173P2 2 1 Yes Mycobacterium gilvum PYR-GCK 1 1 Yes Mycobacterium chubuense NBB4 2 1 Yes Mycobacterium marinum M 2 1 Yes Mycobacterium smegmatis str. MC2 155 2 1 Yes Corynebacterium resistens DSM 45100 1 1 Yes Corynebacterium urealyticum DSM 7109 1 1 Yes Corynebacterium jeikeium K411 3 1 Yes Gardnerella vaginalis 409-05 1 1 Yes Mobiluncus curtisii ATCC 43063 1 1 Yes Thermomicrobium roseum DSM 5159 1 1 Yes Herpetosiphon aurantiacus DSM 785 4 4 Yes Roseiflexus sp. RS-1 1 1 Yes Roseiflexus castenholzii DSM 13941 5 2 Yes Chloroflexus sp. Y-400-fl 1 1 Yes Chloroflexus aggregans DSM 9485 5 2 Yes Chloroflexus aurantiacus J-10-fl 1 1 Yes Meiothermus ruber DSM 1279 1 1 Yes Finegoldia magna ATCC 29328 11 1 Yes Symbiobacterium thermophilum IAM 14863 1 1 Yes Clostridium clariflavum DSM 19732 1 1 Yes Clostridium thermocellum ATCC 27405 2 1 Yes Eubacterium rectale M104/1 2 1 Yes Eubacterium rectale ATCC 33656 1 1 Yes Clostridium cellulovorans 743B 1 1 Yes Clostridium botulinum A str. ATCC 3502 1 1 Yes Caldicellulosiruptor obsidiansis OB47 1 1 Yes Caldicellulosiruptor kronotskyensis 2002 1 1 Yes Caldicellulosiruptor lactoaceticus 6A 3 2 Yes Caldicellulosiruptor kristjanssonii 177R1B 1 1 Yes Caldicellulosiruptor saccharolyticus DSM 8903 1 1 Yes Caldicellulosiruptor bescii DSM 6725 3 3 Yes Streptococcus pasteurianus ATCC 43144 1 1 Yes Streptococcus infantarius subsp. infantarius CJ18 2 1 Yes Streptococcus macedonicus ACA-DC 198 1 1 Yes Ignavibacterium album JCM 16511 6 5 Yes Haliscomenobacter hydrossis DSM 1100 23 6 Yes Saprospira grandis str. Lewin 5 4 Yes Niastella koreensis GR20-10 4 4 Yes Chitinophaga pinensis DSM 2588 2 2 Yes Belliella baltica DSM 15883 1 1 Yes Cyclobacterium marinum DSM 745 1 1 Yes Marivirga tractuosa DSM 4126 2 2 Yes Fibrella aestuarina 1 1 Yes Leadbetterella byssophila DSM 17132 1 1 Yes Cytophaga hutchinsonii ATCC 33406 2 1 Yes Spirosoma linguale DSM 74 1 1 Yes Runella slithyformis DSM 19594 6 2 Yes Paludibacter propionicigenes WB4 4 2 Yes Pedobacter saltans DSM 12145 4 4 Yes Solitalea canadensis DSM 3403 2 2 Yes Pedobacter heparinus DSM 2366 2 2 Yes Sphingobacterium sp. 21 2 2 Yes Fluviicola taffensis DSM 16823 2 2 Yes Owenweeksia hongkongensis DSM 17368 2 2 Yes Zunongwangia profunda SM-A87 2 1 Yes Krokinobacter sp. 4H-3-7-5 5 5 Yes Gramella forsetii KT0803 3 3 Yes Lacinutrix sp. 5H-3-7-4 4 4 Yes Maribacter sp. HTCC2170 7 5 Yes Robiginitalea biformata HTCC2501 12 7 Yes Croceibacter atlanticus HTCC2559 4 4 Yes Aequorivita sublithincola DSM 14238 2 2 Yes Zobellia galactanivorans 12 8 Yes Muricauda ruestringensis DSM 13258 5 3 Yes Cellulophaga algicola DSM 14237 12 6 Yes Cellulophaga lytica DSM 7489 8 6 Yes Flavobacteriaceae bacterium 3519-10 3 3 Yes Polaribacter sp. MED152 5 4 Yes Riemerella anatipestifer ATCC 11845 = DSM 15868 4 4 Yes Ornithobacterium rhinotracheale DSM 15997 2 2 Yes Capnocytophaga canimorsus Cc5 3 2 Yes Capnocytophaga ochracea DSM 7271 4 2 Yes Weeksella virosa DSM 16922 3 3 Yes Flavobacterium indicum GPTSA100-9 2 2 Yes Flavobacterium psychrophilum JIP02/86 3 2 Yes Flavobacterium branchiophilum FL-15 2 2 Yes Flavobacterium columnare ATCC 49512 3 3 Yes Flavobacterium johnsoniae UW101 7 4 Yes Blattabacterium sp. (Nauphoeta cinerea) 1 1 Yes Blattabacterium sp. (Blattella germanica) str. Bge 1 1 Yes Fibrobacter succinogenes subsp. succinogenes S85 10 4 Yes Opitutus terrae PB90-1 1 1 Yes Denitrovibrio acetiphilus DSM 12809 1 1 Yes Granulicella tundricola MP5ACTX9 1 1 Yes Terriglobus roseus DSM 18391 1 1 Yes Candidatus Methylomirabilis oxyfera 1 1 Yes candidate division SR1 bacterium RAAC1_SR1_1 1 1 Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1 1 1 Yes Nautilia profundicola AmH 1 1 Yes Sulfurospirillum deleyianum DSM 6946 1 1 Yes Sulfurospirillum barnesii SES-3 1 1 Yes Arcobacter sp. L 2 1 Yes Arcobacter nitrofigilis DSM 7299 1 1 Yes Arcobacter butzleri RM4018 3 2 Yes Campylobacter curvus 525.92 1 1 Yes Campylobacter concisus 13826 1 1 Yes Campylobacter sp. 03-427 1 1 Yes Campylobacter fetus subsp. fetus 82-40 1 1 Yes uncultured Sulfuricurvum sp. RIFRC-1 2 2 Yes Sulfuricurvum kujiense DSM 16994 2 2 Yes Sulfurimonas denitrificans DSM 1251 1 1 Yes Wolinella succinogenes DSM 1740 1 1 Yes Sulfurovum sp. NBC37-1 1 1 Yes Desulfobacca acetoxidans DSM 11109 1 1 Yes Syntrophus aciditrophicus SB 1 1 Yes Desulfomonile tiedjei DSM 6799 1 1 Yes Desulfatibacillum alkenivorans AK-01 10 7 Yes Desulfobacterium autotrophicum HRM2 1 1 Yes Desulfococcus oleovorans Hxd3 4 4 Yes Desulfohalobium retbaense DSM 5692 1 1 Yes Desulfomicrobium baculatum DSM 4028 2 2 Yes Geobacter daltonii FRC-32 1 1 Yes Geobacter sp. M21 1 1 Yes Geobacter sulfurreducens KN400 1 1 Yes Geobacter metallireducens GS-15 1 1 Yes Pelobacter propionicus DSM 2379 1 1 Yes Pelobacter carbinolicus DSM 2380 3 3 Yes Haliangium ochraceum DSM 14365 24 16 Yes Sorangium cellulosum 'So ce 56' 46 27 Yes Anaeromyxobacter sp. Fw109-5 6 5 Yes Anaeromyxobacter dehalogenans 2CP-1 3 2 Yes Stigmatella aurantiaca DW4/3-1 18 13 Yes Corallococcus coralloides DSM 2259 14 11 Yes Myxococcus xanthus DK 1622 16 13 Yes Myxococcus fulvus HW-1 17 14 Yes Neisseria meningitidis FAM18 1 1 Yes Ramlibacter tataouinensis TTB310 1 1 Yes Polaromonas sp. JS666 1 1 Yes Polaromonas naphthalenivorans CJ2 1 1 Yes Variovorax paradoxus S110 1 1 Yes Rhodoferax ferrireducens T118 1 1 Yes Acidovorax sp. KKS102 2 2 Yes Herminiimonas arsenicoxydans 1 1 Yes Thiobacillus denitrificans ATCC 25259 2 2 Yes Magnetococcus marinus MC-1 2 1 Yes Saccharophagus degradans 2-40 16 6 Yes Teredinibacter turnerae T7901 13 5 Yes Cellvibrio japonicus Ueda107 16 3 Yes Gallibacterium anatis UMN179 2 2 Yes Oceanimonas sp. GK1 1 1 Yes Aliivibrio salmonicida LFI1238 2 1 Yes Vibrio sp. Ex25 1 1 Yes Vibrio harveyi ATCC BAA-1116 2 2 Yes Vibrio parahaemolyticus RIMD 2210633 1 1 Yes Vibrio splendidus LGP32 1 1 Yes Vibrio anguillarum 775 2 1 Yes Vibrio furnissii NCTC 11218 3 2 Yes Vibrio vulnificus MO6-24/O 1 1 Yes Vibrio cholerae O395 1 1 Yes Psychromonas ingrahamii 37 4 2 Yes Ferrimonas balearica DSM 9799 5 2 Yes Shewanella piezotolerans WP3 3 3 Yes Shewanella loihica PV-4 2 2 Yes Shewanella halifaxensis HAW-EB4 2 2 Yes Shewanella sediminis HAW-EB3 2 2 Yes Shewanella denitrificans OS217 3 3 Yes Shewanella pealeana ATCC 700345 4 4 Yes Shewanella oneidensis MR-1 2 2 Yes Shewanella baltica OS185 2 2 Yes Shewanella woodyi ATCC 51908 5 3 Yes Shewanella sp. MR-4 3 3 Yes Shewanella amazonensis SB2B 11 3 Yes Shewanella violacea DSS12 10 8 Yes Shewanella frigidimarina NCIMB 400 3 3 Yes Shewanella putrefaciens CN-32 2 2 Yes Colwellia psychrerythraea 34H 12 4 Yes Pseudoalteromonas atlantica T6c 3 3 Yes Glaciecola sp. 4H-3-7+YE-5 2 2 Yes Glaciecola nitratireducens FR1064 5 3 Yes Marinobacter adhaerens HP15 1 1 Yes Marinobacter sp. BSs20148 2 2 Yes Marinobacter hydrocarbonoclasticus ATCC 49840 1 1 Yes Marinobacter aquaeolei VT8 1 1 Yes Alteromonas sp. SN2 4 4 Yes Alteromonas macleodii str. 'Deep ecotype' 1 1 Yes Kangiella koreensis DSM 16069 1 1 Yes Hahella chejuensis KCTC 2396 5 3 Yes Alcanivorax borkumensis SK2 7 4 Yes Marinomonas mediterranea MMB-1 2 1 Yes Chromohalobacter salexigens DSM 3043 1 1 Yes Halomonas elongata DSM 2581 1 1 Yes Methylomicrobium alcaliphilum 2 2 Yes Methylomonas methanica MC09 3 3 Yes Methylococcus capsulatus str. Bath 1 1 Yes Rhodanobacter denitrificans 1 1 Yes Frateuria aurantia DSM 6220 2 2 Yes Pseudoxanthomonas spadix BD-a59 1 1 Yes Pseudoxanthomonas suwonensis 11-1 1 1 Yes Stenotrophomonas maltophilia K279a 1 1 Yes Xylella fastidiosa M23 4 4 Yes Xanthomonas axonopodis pv. citri str. 306 1 1 Yes Xanthomonas oryzae pv. oryzae PXO99A 1 1 Yes Xanthomonas campestris pv. campestris str. B100 1 1 Yes Nitrosococcus watsonii C-113 1 1 Yes Nitrosococcus halophilus Nc4 1 1 Yes Nitrosococcus oceani ATCC 19707 1 1 Yes gamma proteobacterium HdN1 3 2 Yes Azotobacter vinelandii DJ 1 1 Yes Pseudomonas sp. TKP 1 1 Yes Pseudomonas sp. UW4 3 3 Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421 3 3 Yes Pseudomonas entomophila L48 3 3 Yes Pseudomonas syringae pv. tomato str. DC3000 1 1 Yes Pseudomonas putida F1 3 3 Yes Pseudomonas protegens Pf-5 1 1 Yes Pseudomonas fluorescens SBW25 1 1 Yes Pseudomonas mendocina ymp 1 1 Yes Pseudomonas aeruginosa UCBPP-PA14 1 1 Yes Pseudomonas sp. VLB120 3 3 Yes Psychrobacter sp. G 3 3 Yes Psychrobacter sp. PRwf-1 2 2 Yes Psychrobacter arcticus 273-4 1 1 Yes Psychrobacter cryohalolentis K5 5 5 Yes Moraxella catarrhalis RH4 1 1 Yes Methylophaga sp. JAM1 1 1 Yes Cycloclasticus sp. P1 2 2 Yes Thiomicrospira crunogena XCL-2 1 1 Yes Cenarchaeum symbiosum A 20 4 Yes Candidatus Nitrosopumilus sp. AR2 21 5 Yes Nitrosopumilus maritimus SCM1 13 4 Yes Methanohalobium evestigatum Z-7303 2 1 Yes Methanoculleus marisnigri JR1 1 1 Yes Archaeoglobus veneficus SNP6 1 1 Yes Thermococcus kodakarensis KOD1 4 2 Yes Salinarchaeum sp. Harcht-Bsk1 2 2 Yes Natrinema sp. J7-2 2 2 Yes Halogeometricum borinquense DSM 11551 1 1 Yes Haloferax mediterranei ATCC 33500 2 2 Yes Haloferax volcanii DS2 1 1 Yes Halomicrobium mukohataei DSM 12286 4 3 Yes Halorhabdus utahensis DSM 12940 1 1 Yes Haloarcula hispanica ATCC 33960 4 3 Yes Haloarcula marismortui ATCC 43049 3 3 Yes Halobacterium salinarum R1 1 1 Yes Halobacterium sp. NRC-1 1 1 Yes Aciduliprofundum boonei T469 2 2 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 23 8 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 8 3 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 3 1 Yes Synechococcus sp. PCC 7002 1 1 Yes Cyanothece sp. PCC 7822 1 1 Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327 16 2 Yes Saccharothrix espanaensis DSM 44229 2 2 Yes Propionibacterium avidum 44067 1 1 Yes Propionibacterium acnes ATCC 11828 2 2 Yes Propionibacterium acnes TypeIA2 P.acn31 2 2 Yes Propionibacterium acnes TypeIA2 P.acn17 3 3 Yes Propionibacterium acnes TypeIA2 P.acn33 3 3 Yes Propionibacterium acnes C1 3 3 Yes Propionibacterium acnes 6609 1 1 Yes Propionibacterium acnes 266 3 3 Yes Propionibacterium acnes KPA171202 3 3 Yes Propionibacterium acidipropionici ATCC 4875 3 3 Yes Actinoplanes friuliensis DSM 7358 1 1 Yes Mycobacterium sp. MOTT36Y 2 1 Yes Mycobacterium sp. JDM601 2 1 Yes Mycobacterium abscessus subsp. bolletii 50594 2 1 Yes Mycobacterium liflandii 128FXT 1 1 Yes Mycobacterium sp. KMS 1 1 Yes Mycobacterium sp. MCS 1 1 Yes Mycobacterium yongonense 05-1390 2 1 Yes Mycobacterium intracellulare MOTT-64 2 1 Yes Mycobacterium indicus pranii MTCC 9506 2 1 Yes Mycobacterium intracellulare MOTT-02 2 1 Yes Mycobacterium avium subsp. paratuberculosis MAP4 2 1 Yes Mycobacterium avium subsp. paratuberculosis K-10 2 1 Yes Mycobacterium canettii CIPT 140070017 2 1 Yes Mycobacterium canettii CIPT 140060008 2 1 Yes Mycobacterium canettii CIPT 140070008 2 1 Yes Mycobacterium canettii CIPT 140070010 2 1 Yes Mycobacterium tuberculosis EAI5/NITR206 2 1 Yes Mycobacterium tuberculosis EAI5 2 1 Yes Mycobacterium tuberculosis CAS/NITR204 1 1 Yes Mycobacterium tuberculosis str. Beijing/NITR203 2 1 Yes Mycobacterium tuberculosis UT205 2 1 Yes Mycobacterium tuberculosis RGTB423 2 1 Yes Mycobacterium tuberculosis RGTB327 2 1 Yes Mycobacterium tuberculosis CTRI-2 2 1 Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801 2 1 Yes Mycobacterium tuberculosis KZN 605 2 1 Yes Mycobacterium tuberculosis KZN 4207 2 1 Yes Mycobacterium tuberculosis CCDC5180 2 1 Yes Mycobacterium tuberculosis CCDC5079 2 1 Yes Mycobacterium tuberculosis CCDC5079 2 1 Yes Mycobacterium tuberculosis H37Ra 2 1 Yes Mycobacterium tuberculosis str. Haarlem/NITR202 1 1 Yes Mycobacterium tuberculosis str. Haarlem 2 1 Yes Mycobacterium tuberculosis F11 2 1 Yes Mycobacterium tuberculosis H37Rv 2 1 Yes Mycobacterium tuberculosis CDC1551 2 1 Yes Mycobacterium bovis AF2122/97 2 1 Yes Mycobacterium bovis BCG str. Korea 1168P 2 1 Yes Mycobacterium bovis BCG str. Mexico 2 1 Yes Mycobacterium bovis BCG str. Tokyo 172 2 1 Yes Mycobacterium gilvum Spyr1 1 1 Yes Mycobacterium smegmatis str. MC2 155 2 1 Yes Mycobacterium kansasii ATCC 12478 2 1 Yes Gardnerella vaginalis HMP9231 1 1 Yes Gardnerella vaginalis ATCC 14019 1 1 Yes Bifidobacterium thermophilum RBL67 1 1 Yes Clostridium thermocellum DSM 1313 2 1 Yes Ruminococcus champanellensis 18P13 2 1 Yes Clostridium botulinum H04402 065 1 1 Yes Clostridium botulinum F str. 230613 1 1 Yes Clostridium botulinum F str. Langeland 1 1 Yes Clostridium botulinum Ba4 str. 657 1 1 Yes Clostridium botulinum A2 str. Kyoto 1 1 Yes Clostridium botulinum A3 str. Loch Maree 1 1 Yes Clostridium botulinum A str. Hall 1 1 Yes Clostridium botulinum A str. ATCC 19397 1 1 Yes Streptococcus agalactiae 09mas018883 3 2 Yes Streptococcus suis T15 2 2 Yes Streptococcus suis D9 1 1 Yes Streptococcus suis SS12 1 1 Yes Streptococcus suis D12 1 1 Yes Streptococcus suis JS14 1 1 Yes Streptococcus suis BM407 2 2 Yes Streptococcus suis SC84 1 1 Yes Streptococcus suis 98HAH33 1 1 Yes Streptococcus suis 05ZYH33 1 1 Yes Exiguobacterium antarcticum B7 1 1 Yes Geobacillus sp. C56-T3 1 1 Yes Geobacillus sp. Y412MC52 1 1 Yes Geobacillus sp. Y412MC61 1 1 Yes Amphibacillus xylanus NBRC 15112 1 1 Yes Echinicola vietnamensis DSM 17526 3 2 Yes Emticicia oligotrophica DSM 17448 1 1 Yes Nonlabens dokdonensis DSW-6 5 3 Yes Psychroflexus torquis ATCC 700755 4 3 Yes Riemerella anatipestifer RA-CH-2 4 4 Yes Riemerella anatipestifer RA-CH-1 3 3 Yes Riemerella anatipestifer RA-GD 4 4 Yes Riemerella anatipestifer ATCC 11845 = DSM 15868 4 4 Yes Blattabacterium sp. (Panesthia angustipennis spadica) Blattabacterium sp. (Panesthia angustipennis spadica) str. BPAA 1 1 Yes Blattabacterium sp. (Blaberus giganteus) 1 1 Yes Blattabacterium sp. (Blatta orientalis) Blattabacterium sp. (Blatta orientalis) str. Tarazona 1 1 Yes Blattabacterium sp. (Periplaneta americana) str. BPLAN 1 1 Yes Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu 1 1 Yes Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR 1 1 Yes Fibrobacter succinogenes subsp. succinogenes S85 10 4 Yes Bdellovibrio exovorus JSS 1 1 Yes Arcobacter butzleri 7h1h 3 2 Yes Arcobacter butzleri ED-1 3 2 Yes Desulfocapsa sulfexigens DSM 10523 1 1 Yes Desulfobacula toluolica Tol2 1 1 Yes Desulfovibrio gigas DSM 1382 = ATCC 19364 2 2 Yes Geobacter sulfurreducens PCA 2 2 Yes Sorangium cellulosum So0157-2 47 28 Yes Anaeromyxobacter sp. K 3 2 Yes Anaeromyxobacter dehalogenans 2CP-C 3 2 Yes Myxococcus stipitatus DSM 14675 13 12 Yes Neisseria meningitidis M01-240355 1 1 Yes Variovorax paradoxus B4 1 1 Yes Variovorax paradoxus EPS 1 1 Yes Simiduia agarivorans SA1 = DSM 21679 10 7 Yes Vibrio sp. EJY3 3 2 Yes Vibrio parahaemolyticus BB22OP 1 1 Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749 1 1 Yes Vibrio anguillarum Listonella anguillarum M3 2 1 Yes Vibrio nigripulchritudo VibrioScope 1 1 Yes Vibrio vulnificus CMCP6 2 1 Yes Vibrio vulnificus YJ016 1 1 Yes Vibrio cholerae LMA3984-4 1 1 Yes Vibrio cholerae M66-2 1 1 Yes Vibrio cholerae O395 1 1 Yes Vibrio cholerae IEC224 1 1 Yes Vibrio cholerae O1 str. 2010EL-1786 1 1 Yes Vibrio cholerae MJ-1236 1 1 Yes Vibrio cholerae O1 biovar El Tor str. N16961 1 1 Yes Shewanella sp. W3-18-1 2 2 Yes Shewanella sp. ANA-3 2 2 Yes Shewanella baltica BA175 2 2 Yes Shewanella baltica OS678 2 2 Yes Shewanella baltica OS117 2 2 Yes Shewanella baltica OS223 2 2 Yes Shewanella baltica OS195 2 2 Yes Shewanella baltica OS155 2 2 Yes Shewanella sp. MR-7 3 3 Yes Shewanella putrefaciens 200 2 2 Yes Glaciecola psychrophila 170 9 2 Yes Alteromonas macleodii str. 'Ionian Sea UM4b' 3 3 Yes Alteromonas macleodii str. 'Ionian Sea UM7' 4 4 Yes Alteromonas macleodii str. 'Ionian Sea U8' 1 1 Yes Alteromonas macleodii str. 'Ionian Sea U7' 1 1 Yes Alteromonas macleodii str. 'Ionian Sea U4' 1 1 Yes Alteromonas macleodii str. 'Aegean Sea MED64' 1 1 Yes Alteromonas macleodii str. 'English Channel 615' 1 1 Yes Alteromonas macleodii AltDE1 4 4 Yes Alteromonas macleodii str. 'English Channel 673' 1 1 Yes Alteromonas macleodii str. 'Balearic Sea AD45' 1 1 Yes Alteromonas macleodii str. 'Black Sea 11' 1 1 Yes Alteromonas macleodii ATCC 27126 1 1 Yes Alcanivorax dieselolei B5 5 4 Yes Thalassolituus oleivorans MIL-1 20 8 Yes Stenotrophomonas maltophilia D457 1 1 Yes Stenotrophomonas maltophilia JV3 1 1 Yes Stenotrophomonas maltophilia R551-3 1 1 Yes Xylella fastidiosa subsp. fastidiosa GB514 4 4 Yes Xylella fastidiosa M12 3 3 Yes Xylella fastidiosa Temecula1 4 4 Yes Xylella fastidiosa 9a5c 4 4 Yes Xanthomonas citri subsp. citri Aw12879 1 1 Yes Xanthomonas campestris pv. vesicatoria str. 85-10 1 1 Yes Xanthomonas axonopodis pv. citrumelo F1 1 1 Yes Xanthomonas axonopodis Xac29-1 1 1 Yes Xanthomonas oryzae pv. oryzicola BLS256 1 1 Yes Xanthomonas oryzae pv. oryzae MAFF 311018 1 1 Yes Xanthomonas campestris pv. raphani 756C 1 1 Yes Xanthomonas campestris pv. campestris str. 8004 1 1 Yes Xanthomonas campestris pv. campestris str. ATCC 33913 1 1 Yes Azotobacter vinelandii CA6 1 1 Yes Azotobacter vinelandii CA 1 1 Yes Pseudomonas denitrificans ATCC 13867 1 1 Yes Pseudomonas syringae pv. phaseolicola 1448A 1 1 Yes Pseudomonas syringae pv. syringae B728a 1 1 Yes Pseudomonas monteilii SB3101 3 3 Yes Pseudomonas monteilii SB3078 3 3 Yes Pseudomonas putida H8234 3 3 Yes Pseudomonas putida HB3267 3 3 Yes Pseudomonas putida NBRC 14164 3 3 Yes Pseudomonas putida DOT-T1E 3 3 Yes Pseudomonas putida S16 3 3 Yes Pseudomonas putida BIRD-1 3 3 Yes Pseudomonas putida W619 3 3 Yes Pseudomonas putida ND6 3 3 Yes Pseudomonas putida KT2440 3 3 Yes Pseudomonas putida GB-1 3 3 Yes Pseudomonas protegens CHA0 1 1 Yes Pseudomonas fluorescens F113 3 3 Yes Pseudomonas fluorescens R124 2 2 Yes Pseudomonas fluorescens Pf0-1 3 3 Yes Pseudomonas resinovorans NBRC 106553 3 3 Yes Pseudomonas aeruginosa SCV20265 1 1 Yes Pseudomonas aeruginosa MTB-1 1 1 Yes Pseudomonas aeruginosa LES431 1 1 Yes Pseudomonas aeruginosa RP73 1 1 Yes Pseudomonas aeruginosa B136-33 1 1 Yes Pseudomonas aeruginosa PA1R 2 2 Yes Pseudomonas aeruginosa PA1 2 2 Yes Pseudomonas aeruginosa DK2 1 1 Yes Pseudomonas aeruginosa NCGM2.S1 1 1 Yes Pseudomonas aeruginosa M18 1 1 Yes Pseudomonas aeruginosa LESB58 1 1 Yes Pseudomonas aeruginosa PA7 1 1 Yes Pseudomonas aeruginosa PAO1 1 1 Yes Methylophaga sp. JAM7 1 1 Yes Cycloclasticus zancles 7-ME 2 2 Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1 20 7 Yes Methanolobus psychrophilus R15 4 1 Yes Thermococcus sp. AM4 2 2 Yes Thermococcus sp. CL1 1 1 Yes Thermococcus litoralis DSM 5473 1 1 Yes Halovivax ruber XH-70 1 1 Yes Halorhabdus tiamatea SARL4B 1 1 Yes Natronomonas moolapensis 8.8.11 1 1 Yes Haloarcula hispanica N601 5 3 Yes Homo sapiens 75_37 (old version GRC) Human 31 12 Yes Homo sapiens Human 15 5 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 15 5 Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex) 2 1 Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC) 2 2 Yes Homo sapiens 69_37 Human 15 5 Yes Pan troglodytes 69_2.1.4 Chimpanzee 12 4 Yes Gorilla gorilla 69_3.1 Western gorilla 14 5 Yes Pongo abelii 69_2 Sumatran orangutan 12 4 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 14 5 Yes Macaca mulatta 69_1 Rhesus monkey 15 5 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 15 5 Yes Otolemur garnettii 69_3 Small-eared galago 15 5 Yes Microcebus murinus 69_1 Gray mouse lemur 10 4 Yes Rattus norvegicus 69_3.4 Norway rat 9 3 Yes Mus musculus 69_38 House mouse 15 5 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 11 5 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 15 5 Yes Cavia porcellus 69_3 Domestic guinea pig 14 5 Yes Oryctolagus cuniculus 69_2 Rabbit 12 4 Yes Ochotona princeps 69 American pika 9 5 Yes Tupaia belangeri 69 Northern tree shrew 11 4 Yes Sus scrofa 69_10.2 Pig 18 7 Yes Bos taurus 69_3.1 Cattle 15 5 Yes Vicugna pacos 69_1 Alpaca 5 2 Yes Tursiops truncatus 69_1 Bottlenose dolphin 15 5 Yes Mustela putorius furo 69_1.0 Domestic ferret 15 5 Yes Ailuropoda melanoleuca 69_1 Giant panda 15 5 Yes Canis familiaris 69_3.1 Dog 15 5 Yes Felis catus 69 Domestic cat 11 5 Yes Equus caballus 69_2 Horse 15 5 Yes Myotis lucifugus 69_2.0 Little brown bat 15 5 Yes Pteropus vampyrus 69_1 Large flying fox 11 5 Yes Sorex araneus 69_1 European shrew 11 4 Yes Erinaceus europaeus 69 Western European hedgehog 11 4 Yes Procavia capensis 69_1 Cape rock hyrax 14 5 Yes Loxodonta africana 69_3 African savanna elephant 15 5 Yes Echinops telfairi 69 Small Madagascar hedgehog 11 4 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 7 4 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 7 3 Yes Macropus eugenii 69_1.0 Tammar wallaby 11 4 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 15 5 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 15 5 Yes Ornithorhynchus anatinus 69_5 Platypus 8 4 Yes Petromyzon marinus 69_7.0 Sea lamprey 9 4 Yes Meleagris gallopavo 69_2 Turkey 11 4 Yes Gallus gallus 69_2 Chicken 12 4 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 15 6 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 19 7 Yes Anolis carolinensis 69_2.0 Green anole 14 5 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 12 5 Yes Latimeria chalumnae 69_1 Coelacanth 15 5 Yes Gadus morhua 69_1 Atlantic cod 24 8 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 18 6 Yes Takifugu rubripes 69_4 Torafugu 21 7 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 24 8 Yes Oryzias latipes 69_1 Japanese medaka 23 8 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 22 8 Yes Oreochromis niloticus 69_1.0 Nile tilapia 24 8 Yes Danio rerio 69_9 Zebrafish 28 10 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 11 4 Yes Ciona intestinalis 69 Vase tunicate 11 4 Yes Drosophila melanogaster 69_5 Fruit fly 3 1 Yes 1_050719N (meta-genome) 1 1 Yes 1_Upper_euphotic (meta-genome) 10 9 Yes 2_Base_of_chrolophyll_max (meta-genome) 7 5 Yes 3_050719R (meta-genome) 2 2 Yes 3_Below_base_of_euphotic (meta-genome) 13 9 Yes 4_050719Q (meta-genome) 2 2 Yes 4_Deep_abyss (meta-genome) 11 10 Yes 5_050719P (meta-genome) 2 2 Yes 5_Below_upper_mesopelagic (meta-genome) 13 11 Yes 6_Upper_euphotic (meta-genome) 26 21 Yes 7_Oxygen_minimum_layer (meta-genome) 10 9 Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 1 1 Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome) 1 1 Yes Air microbial communities Singapore indoor air filters 1 (meta-genome) 2 2 Yes Atta cephalotes fungus garden (ACEF) (meta-genome) 1 1 Yes Bath Hot Springs, filamentous community (meta-genome) 1 1 Yes Combined (meta-genome) 12 12 Yes Crater Hills (meta-genome) 3 3 Yes Cyphomyrmex longiscapus fungus garden (meta-genome) 4 4 Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 4 4 Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 1 1 Yes Dump bottom (Dump bottom) (meta-genome) 42 42 Yes Dump top (Dump top) (meta-genome) 32 32 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 9 8 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 15 10 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 16 15 Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 14 14 Yes Fungus garden combined (combined) (meta-genome) 4 4 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 2 2 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 10 10 Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 3 3 Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) 2 2 Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome) 8 8 Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome) 3 3 Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 3 2 Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 6 6 Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome) 8 5 Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 8 7 Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome) 2 2 Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome) 11 9 Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 7 6 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 5 5 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 8 7 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 2 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 9 8 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 5 5 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 11 11 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 4 4 Yes Human Gut Community Subject 8 (meta-genome) 1 1 Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome) 1 1 Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 13 13 Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 8 8 Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome) 15 14 Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 130 108 Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 46 36 Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome) 6 4 Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 47 40 Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 20 18 Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 10 9 Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 24 24 Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 3 3 Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome) 6 6 Yes Mouse Gut Community lean3 (meta-genome) 1 1 Yes NCBI 2017_08 genome 42720 27432 Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 39 34 Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) 10 8 Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome) 1 1 Yes simHC - Simulated High Complexity Metagenome (meta-genome) 12 12 Yes simLC - Simulated Low Complexity Metagenome (meta-genome) 14 14 Yes simMC - Simulated Medium Complexity Metagenome (meta-genome) 13 13 Yes Sludge/Australian, Phrap Assembly (meta-genome) 22 11 Yes Sludge/US, Jazz Assembly (meta-genome) 3 2 Yes Sludge/US, Phrap Assembly (meta-genome) 5 4 Yes Soil microbial communities from Minnesota Farm (meta-genome) 50 45 Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 90 86 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 45 45 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 28 26 Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 18 18 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 41 41 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 28 25 Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 1 1 Yes STRING v9.0.5 (STRING) 1106 588 Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 11 11 Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 43 41 Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 6 6 Yes Termite Protist Endosymbiont Community (meta-genome) 1 1 Yes Uniprot 2018_03 genome 26620 17028 Yes Uranium Contaminated Groundwater FW106 (meta-genome) 1 1 Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 7 7 Yes Global Ocean Sampling Expedition (GOS) 3807 2775 Yes NCBI plasmid sequences (Plasmids) 9 7 Yes PDB chains (SCOP 1.75 ) (PDB) 1 1 Yes Protein Data Bank (all PDB sequenc) 20 10 Yes SCOP2 SCOPe CATH ECOD (all domain sequ) 18 8 Yes TargetDB 7 5
