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TSP type-3 repeat family domain assignments
in
all bacterial genomes

Assignment details

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15 selected genomes have 44 significant domains in 25 proteins.


Symbiobacterium thermophilum IAM 14863 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|51892322|ref|YP_075013.1|   6.54e-30   0.0000228   307-403   1ux6 A:813-936  

Robiginitalea biformata HTCC2501 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|260061791|ref|YP_003194871.1|   1.83e-24   0.0000385   1110-1204   1ux6 A:813-936  
 
Weak hits:
gi|260060614|ref|YP_003193694.1|   0.0000445   0.0031   1107-1188   1ux6 A:813-936  
gi|260060923|ref|YP_003194003.1|   0.0000562   0.026   964-1001   1ux6 A:813-936  
gi|260061425|ref|YP_003194505.1|   0.00000000000602   0.0028   187-260   1ux6 A:813-936  
  0.00000000248   0.0026   241-316   1ux6 A:813-936  
gi|260061523|ref|YP_003194603.1|   0.0000994   0.0045   129-195   1ux6 A:813-936  
gi|260061689|ref|YP_003194769.1|   5.43e-19   0.0011   195-286   1ux6 A:813-936  
  1.77e-18   0.00085   395-484   1ux6 A:813-936  
  1.83e-18   0.0011   100-186   1ux6 A:813-936  
  0.000000000000392   0.0013   326-394   1ux6 A:813-936  
gi|260063546|ref|YP_003196626.1|   0.00144   0.0018   483-566   1ux6 A:813-936  
gi|260063552|ref|YP_003196632.1|   0.0000000589   0.0013   40-136   1ux6 A:813-936  
  0.0000157   0.0038   124-187   1ux6 A:813-936  

Cellulophaga lytica DSM 7489 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|325285578|ref|YP_004261368.1|   3.27e-22   0.0000858   1078-1172   1ux6 A:813-936  
 
Weak hits:
gi|325285138|ref|YP_004260928.1|   0.00000981   0.0032   38-142   1ux6 A:813-936  
gi|325285431|ref|YP_004261221.1|   0.0131   0.0014   484-567   1ux6 A:813-936  
gi|325285436|ref|YP_004261226.1|   0.00000000405   0.0064   69-162   1ux6 A:813-936  
  0.00000000955   0.0034   232-309   1ux6 A:813-936  
  0.000000262   0.00072   1166-1264   1ux6 A:813-936  
  0.000471   0.00042   706-801   1ux6 A:813-936  
  0.000575   0.0091   180-220   1ux6 A:813-936  
gi|325285959|ref|YP_004261749.1|   0.000863   0.0027   139-199   1ux6 A:813-936  
gi|325286152|ref|YP_004261942.1|   0.000000034   0.0014   205-323   1ux6 A:813-936  
gi|325287330|ref|YP_004263120.1|   0.0000119   0.0094   843-874   1ux6 A:813-936  
gi|325287334|ref|YP_004263124.1|   0.000085   0.0042   239-268   1ux6 A:813-936  
gi|325287989|ref|YP_004263779.1|   0.00112   0.0042   651-704   1ux6 A:813-936  
  0.0196   0.0054   993-1032   1ux6 A:813-936  

Capnocytophaga ochracea DSM 7271 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|256820413|ref|YP_003141692.1|   1.96e-22   0.0000715   676-761   1ux6 A:813-936  
  4.97e-16   0.00048   634-697   1ux6 A:813-936  
 
Weak hits:
gi|256820114|ref|YP_003141393.1|   0.00000000157   0.0025   252-328   1ux6 A:813-936  
  0.0000000275   0.0021   198-272   1ux6 A:813-936  

Desulfatibacillum alkenivorans AK-01 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|218779101|ref|YP_002430419.1|   2.09e-20   0.0000297   481-587   1ux6 A:813-936  
  0.00000000000000301   0.00019   400-483   1ux6 A:813-936  
  0.00353   0.003   585-620   1ux6 A:813-936  
gi|218781264|ref|YP_002432582.1|   0.00000000000000157   0.0000587   1379-1482   1ux6 A:813-936  
  0.0000000000392   0.00017   858-967   1ux6 A:813-936  
  0.0000000523   0.00073   423-475   1ux6 A:813-936  
  0.0115   0.01   37-57   1ux6 A:813-936  
 
Weak hits:
gi|218778089|ref|YP_002429407.1|   0.000000034   0.01   235-279   1ux6 A:813-936  
gi|218778169|ref|YP_002429487.1|   0.0000109   0.0094   240-270   1ux6 A:813-936  
gi|218778445|ref|YP_002429763.1|   0.000000012   0.0014   48-114   1ux6 A:813-936  
gi|218778894|ref|YP_002430212.1|   0.00000811   0.0085   73-105   1ux6 A:813-936  
gi|218780334|ref|YP_002431652.1|   0.000000955   0.0066   247-287   1ux6 A:813-936  
gi|218780737|ref|YP_002432055.1|   0.000131   0.0074   1671-1761   1ux6 A:813-936  
  0.000602   0.01   888-957   1ux6 A:813-936  

Sorangium cellulosum 'So ce 56' has 7 significant domains in 4 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|162450914|ref|YP_001613281.1|   1.1e-29   0.00002   190-311   1ux6 A:813-936  
  1.83e-25   0.0000203   301-421   1ux6 A:813-936  
  5.62e-18   0.0000998   72-164   1ux6 A:813-936  
  0.00000549   0.0016   35-73   1ux6 A:813-936  
  0.0000497   0.0017   158-192   1ux6 A:813-936  
gi|162451105|ref|YP_001613472.1|   1.14e-23   0.00005   263-359   1ux6 A:813-936  
  6.8e-19   0.0000342   418-506   1ux6 A:813-936  
  0.000000012   0.00027   364-415   1ux6 A:813-936  
gi|162451838|ref|YP_001614205.1|   2.22e-18   0.000052   333-479   1ux6 A:813-936  
  4.32e-17   0.00026   824-920   1ux6 A:813-936  
  0.000000000000445   0.00014   925-1018   1ux6 A:813-936  
  0.00000000000615   0.00031   44-113   1ux6 A:813-936  
  0.00000000314   0.00025   1009-1075   1ux6 A:813-936  
  0.000000000203   0.0000504   244-396   1ux6 A:813-936  
 
Weak hits:
gi|162448325|ref|YP_001610692.1|   0.00000288   0.00096   667-711   1ux6 A:813-936  
  0.00000902   0.0025   606-661   1ux6 A:813-936  
gi|162448338|ref|YP_001610705.1|   0.0000222   0.0051   656-724   1ux6 A:813-936  
  0.0000575   0.0046   518-587   1ux6 A:813-936  
gi|162448339|ref|YP_001610706.1|   0.0000000000000824   0.0016   313-403   1ux6 A:813-936  
  0.000000000000107   0.0019   373-468   1ux6 A:813-936  
gi|162448389|ref|YP_001610756.1|   0.00222   0.0062   1122-1195   1ux6 A:813-936  
  0.0111   0.0058   574-660   1ux6 A:813-936  
gi|162448390|ref|YP_001610757.1|   0.0000000000000641   0.0014   378-473   1ux6 A:813-936  
  0.0000000981   0.0033   321-376   1ux6 A:813-936  
gi|162448958|ref|YP_001611325.1|   0.0000000301   0.0014   963-1002   1ux6 A:813-936  
gi|162449165|ref|YP_001611532.1|   0.0000000222   0.0018   194-240   1ux6 A:813-936  
gi|162449457|ref|YP_001611824.1|   0.0000000000157   0.00031   5-83   1ux6 A:813-936  
gi|162449773|ref|YP_001612140.1|   0.000000012   0.002   336-450   1ux6 A:813-936  
gi|162450713|ref|YP_001613080.1|   0.0000000000654   0.00069   335-436   1ux6 A:813-936  
gi|162450796|ref|YP_001613163.1|   0.00000000000876   0.00054   320-406   1ux6 A:813-936  
gi|162451106|ref|YP_001613473.1|   0.000000000000471   0.0011   369-457   1ux6 A:813-936  
gi|162451691|ref|YP_001614058.1|   0.000000183   0.0062   324-373   1ux6 A:813-936  
gi|162451716|ref|YP_001614084.1|   0.00405   0.0061   48-120   1ux6 A:813-936  
gi|162451824|ref|YP_001614191.1|   0.000000000000994   0.00013   164-251   1ux6 A:813-936  
gi|162451840|ref|YP_001614207.1|   0.0000000000017   0.0012   335-420   1ux6 A:813-936  
  0.000000000693   0.0037   430-498   1ux6 A:813-936  
gi|162452111|ref|YP_001614478.1|   0.000275   0.02   57-122   1ux6 A:813-936  
gi|162452747|ref|YP_001615114.1|   0.00000268   0.001   151-251   1ux6 A:813-936  
gi|162453180|ref|YP_001615547.1|   0.00051   0.01   451-500   1ux6 A:813-936  
gi|162454212|ref|YP_001616579.1|   0.000000000458   0.00053   334-420   1ux6 A:813-936  
  0.0000000222   0.00067   420-519   1ux6 A:813-936  
gi|162454304|ref|YP_001616671.1|   0.00000034   0.0011   295-364   1ux6 A:813-936  
gi|162454676|ref|YP_001617043.1|   0.0000000288   0.0018   619-658   1ux6 A:813-936  
gi|162454943|ref|YP_001617310.1|   0.00000000000000405   0.00011   456-546   1ux6 A:813-936  
gi|162455131|ref|YP_001617498.1|   0.000000000000235   0.00016   1079-1160   1ux6 A:813-936  
gi|162455136|ref|YP_001617503.1|   0.0000000000000667   0.00012   1091-1172   1ux6 A:813-936  
gi|162455833|ref|YP_001618200.1|   0.0000000177   0.00096   366-463   1ux6 A:813-936  
  0.0000222   0.0015   464-540   1ux6 A:813-936  
gi|162456349|ref|YP_001618716.1|   0.00000000000327   0.0011   368-461   1ux6 A:813-936  
  0.0000000000706   0.0014   308-397   1ux6 A:813-936  
gi|162457432|ref|YP_001619799.1|   0.00615   0.0089   328-379   1ux6 A:813-936  
gi|162457522|ref|YP_001619889.1|   0.000000102   0.0019   182-284   1ux6 A:813-936  

Corallococcus coralloides DSM 2259 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|383452789|ref|YP_005366778.1|   0.00000000000262   0.0000541   612-738   1ux6 A:813-936  
gi|383453240|ref|YP_005367229.1|   3.27e-21   0.0000812   97-186   1ux6 A:813-936  
  1.06e-16   0.00024   195-273   1ux6 A:813-936  
  0.000405   0.0013   56-108   1ux6 A:813-936  
 
Weak hits:
gi|383452869|ref|YP_005366858.1|   0.0000000000000517   0.00061   349-438   1ux6 A:813-936  
gi|383453239|ref|YP_005367228.1|   0.000128   0.009   310-406   1ux6 A:813-936  
gi|383453241|ref|YP_005367230.1|   0.00000745   0.0056   391-429,461-524   1ux6 A:813-936  
gi|383453242|ref|YP_005367231.1|   0.00000517   0.009   328-415   1ux6 A:813-936  
gi|383454312|ref|YP_005368301.1|   0.000000000196   0.0014   18-100   1ux6 A:813-936  
  0.000000000418   0.00096   80-163   1ux6 A:813-936  
gi|383456559|ref|YP_005370548.1|   0.000157   0.026   50-85   1ux6 A:813-936  
gi|383456768|ref|YP_005370757.1|   0.0000000000327   0.00064   312-439   1ux6 A:813-936  
gi|383456976|ref|YP_005370965.1|   0.00235   0.015   345-367   1ux6 A:813-936  
gi|383457860|ref|YP_005371849.1|   0.0000824   0.019   138-171   1ux6 A:813-936  
gi|383457962|ref|YP_005371951.1|   0.00000000000209   0.002   333-421   1ux6 A:813-936  
gi|383458053|ref|YP_005372042.1|   0.00000000000157   0.00065   2307-2416   1ux6 A:813-936  
  0.0000235   0.0039   1567-1661   1ux6 A:813-936  
  0.00196   0.0024   1795-1858   1ux6 A:813-936  
gi|383459160|ref|YP_005373149.1|   0.00209   0.0016   729-793   1ux6 A:813-936  
  0.0183   0.0086   369-395   1ux6 A:813-936  
gi|383459430|ref|YP_005373419.1|   0.000000314   0.013   327-375   1ux6 A:813-936  

Myxococcus xanthus DK 1622 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|108759842|ref|YP_629591.1|   7.85e-21   0.0001   152-244   1ux6 A:813-936  
  4.58e-16   0.0002   256-328   1ux6 A:813-936  
  0.000654   0.0016   112-163   1ux6 A:813-936  
 
Weak hits:
gi|108757759|ref|YP_629590.1|   0.00131   0.012   327-419   1ux6 A:813-936  
gi|108757918|ref|YP_632429.1|   0.0000109   0.00092   345-471   1ux6 A:813-936  
gi|108758240|ref|YP_629592.1|   0.00000262   0.0028   392-498   1ux6 A:813-936  
gi|108759341|ref|YP_630319.1|   0.0000000000418   0.0013   327-413   1ux6 A:813-936  
  0.00000000301   0.00088   388-469   1ux6 A:813-936  
gi|108759406|ref|YP_634375.1|   0.00000000144   0.0028   328-381   1ux6 A:813-936  
gi|108759418|ref|YP_635012.1|   0.000000101   0.015   324-374   1ux6 A:813-936  
gi|108761081|ref|YP_635504.1|   0.00000000144   0.001   50-210   1ux6 A:813-936  
gi|108761291|ref|YP_633197.1|   0.000000196   0.00071   360-463   1ux6 A:813-936  
gi|108761543|ref|YP_634828.1|   0.00275   0.0076   221-260   1ux6 A:813-936  
gi|108761865|ref|YP_629593.1|   0.0000222   0.012   375-453   1ux6 A:813-936  
gi|108763188|ref|YP_632960.1|   0.0000000000275   0.002   393-472   1ux6 A:813-936  
  0.00000017   0.0032   331-383   1ux6 A:813-936  
gi|108763506|ref|YP_633737.1|   0.0000000000347   0.00086   2424-2518   1ux6 A:813-936  
  0.00314   0.0037   1713-1792   1ux6 A:813-936  
gi|108763653|ref|YP_633071.1|   0.0000628   0.015   242-314   1ux6 A:813-936  
gi|108764058|ref|YP_629147.1|   0.00000000000876   0.00017   641-739   1ux6 A:813-936  

Myxococcus fulvus HW-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|338530099|ref|YP_004663433.1|   5.62e-21   0.0000457   107-194   1ux6 A:813-936  
  4.58e-16   0.00019   200-274   1ux6 A:813-936  
  0.000837   0.0016   58-109   1ux6 A:813-936  
 
Weak hits:
gi|338530097|ref|YP_004663431.1|   0.0000242   0.012   375-452   1ux6 A:813-936  
gi|338530098|ref|YP_004663432.1|   0.00000889   0.0063   392-429,461-522   1ux6 A:813-936  
gi|338530100|ref|YP_004663434.1|   0.000667   0.011   295-387   1ux6 A:813-936  
gi|338530441|ref|YP_004663775.1|   0.0131   0.0022   136-260   1ux6 A:813-936  
  0.0589   0.0084   72-164   1ux6 A:813-936  
gi|338530524|ref|YP_004663858.1|   0.0000000000536   0.00019   587-688   1ux6 A:813-936  
gi|338531531|ref|YP_004664865.1|   0.00000000157   0.00095   31-168   1ux6 A:813-936  
gi|338531541|ref|YP_004664875.1|   0.000000000000249   0.001   28-139   1ux6 A:813-936  
gi|338531938|ref|YP_004665272.1|   0.00000196   0.0023   331-394   1ux6 A:813-936  
gi|338532051|ref|YP_004665385.1|   0.000000102   0.013   327-377   1ux6 A:813-936  
gi|338532231|ref|YP_004665565.1|   0.00405   0.0072   222-262   1ux6 A:813-936  
gi|338532701|ref|YP_004666035.1|   0.00000000000785   0.0029   1638-1719   1ux6 A:813-936  
gi|338532860|ref|YP_004666194.1|   0.00772   0.0057   231-294   1ux6 A:813-936  
gi|338533289|ref|YP_004666623.1|   0.0000000000484   0.0012   327-413   1ux6 A:813-936  
  0.00000000129   0.00092   388-469   1ux6 A:813-936  
gi|338535509|ref|YP_004668843.1|   0.0000157   0.002   401-467   1ux6 A:813-936  
  0.0759   0.0052   330-376   1ux6 A:813-936  
gi|338536016|ref|YP_004669350.1|   0.0000000000235   0.0024   376-455   1ux6 A:813-936  
  0.0000000549   0.003   314-364   1ux6 A:813-936  
gi|338536247|ref|YP_004669581.1|   0.00000000000249   0.0012   367-462   1ux6 A:813-936  
gi|338536716|ref|YP_004670050.1|   0.000000000144   0.001   2284-2379   1ux6 A:813-936  
  0.00085   0.0033   1560-1652   1ux6 A:813-936  
  0.0262   0.0044   2381-2425   1ux6 A:813-936  

Cellvibrio japonicus Ueda107 has 11 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|192359432|ref|YP_001984118.1|   1.31e-20   0.0001   863-956   1ux6 A:813-936  
  0.0000000000366   0.0005   589-671   1ux6 A:813-936  
  0.000000196   0.0017   823-862   1ux6 A:813-936  
gi|192360769|ref|YP_001981783.1|   6.15e-36   0.0000159   1365-1481   1ux6 A:813-936  
  7.85e-34   0.000021   1145-1262   1ux6 A:813-936  
  1.7e-33   0.0000164   781-894   1ux6 A:813-936  
  2.62e-33   0.0000119   962-1081   1ux6 A:813-936  
  3.53e-33   0.000017   277-392   1ux6 A:813-936  
  1.31e-31   0.0000141   1255-1374   1ux6 A:813-936  
  2.62e-31   0.0000131   671-791   1ux6 A:813-936  
  2.48e-29   0.0000164   171-282   1ux6 A:813-936  
  4.58e-25   0.0000941   880-973   1ux6 A:813-936  
  7.98e-25   0.00011   1062-1154   1ux6 A:813-936  
  1.83e-21   0.0000699   84-175   1ux6 A:813-936  
  8.5e-21   0.00015   1464-1534   1ux6 A:813-936  
 
Weak hits:
gi|192359477|ref|YP_001982978.1|   0.0000000000334   0.0011   925-1019   1ux6 A:813-936  
gi|192361760|ref|YP_001982981.1|   0.000118   0.0039   10725-10823   1ux6 A:813-936  
gi|192361868|ref|YP_001980543.1|   0.0131   0.017   543-590   1ux6 A:813-936  

Alcanivorax borkumensis SK2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|110834387|ref|YP_693246.1|   6.54e-24   0.0000435   104-211   1ux6 A:813-936  
  3.4e-19   0.00012   34-122   1ux6 A:813-936  
  0.0000000000288   0.00019   191-295   1ux6 A:813-936  
 
Weak hits:
gi|110833683|ref|YP_692542.1|   6.67e-16   0.004   194-258   1ux6 A:813-936  
gi|110834388|ref|YP_693247.1|   0.00000327   0.0055   215-248   1ux6 A:813-936  
gi|110835505|ref|YP_694364.1|   0.00000183   0.0014   385-476   1ux6 A:813-936  
  0.00000759   0.0042   313-388   1ux6 A:813-936  
  0.0353   0.00039   436-562   1ux6 A:813-936  

Sorangium cellulosum So0157-2 has 11 significant domains in 5 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|521462689|ref|YP_008149576.1|   1.44e-29   0.0000252   183-304   1ux6 A:813-936  
  2.62e-23   0.0000164   295-413   1ux6 A:813-936  
  2.09e-21   0.0000677   37-124   1ux6 A:813-936  
  0.00000000000222   0.00017   398-469   1ux6 A:813-936  
  0.00000000000353   0.00032   112-185   1ux6 A:813-936  
gi|521462971|ref|YP_008149893.1|   6.15e-18   0.0000749   409-495   1ux6 A:813-936  
  1.31e-17   0.0000427   337-421   1ux6 A:813-936  
  1.57e-16   0.00005   260-351   1ux6 A:813-936  
gi|521463702|ref|YP_008150715.1|   0.00000000000000418   0.000067   148-235   1ux6 A:813-936  
gi|521463716|ref|YP_008150729.1|   0.000000000000017   0.0001   313-431   1ux6 A:813-936  
  0.000000000000915   0.00025   850-919   1ux6 A:813-936  
  0.00000000000484   0.0000655   397-513   1ux6 A:813-936  
  0.0000000000183   0.00029   45-121   1ux6 A:813-936  
  0.00798   0.0000682   503-624   1ux6 A:813-936  
  0.0144   0.000037   725-843   1ux6 A:813-936  
gi|521465694|ref|YP_008152936.1|   2.16e-28   0.0000256   509-623   1ux6 A:813-936  
  3.27e-19   0.0000339   618-723   1ux6 A:813-936  
 
Weak hits:
gi|521459926|ref|YP_008146539.1|   0.000000235   0.00076   638-705   1ux6 A:813-936  
  0.00000183   0.0028   593-656   1ux6 A:813-936  
gi|521459945|ref|YP_008146559.1|   0.000719   0.006   501-583   1ux6 A:813-936  
  0.00968   0.004   1055-1132   1ux6 A:813-936  
  0.012   0.0044   1179-1263   1ux6 A:813-936  
gi|521459946|ref|YP_008146560.1|   0.0000000000000334   0.0014   373-468   1ux6 A:813-936  
gi|521459985|ref|YP_008146599.1|   0.0000000000000157   0.0013   329-424   1ux6 A:813-936  
  0.000000017   0.0028   271-326   1ux6 A:813-936  
gi|521460562|ref|YP_008147234.1|   0.00301   0.0099   444-487   1ux6 A:813-936  
gi|521460677|ref|YP_008147362.1|   0.0000000000222   0.00077   1110-1180   1ux6 A:813-936  
gi|521460678|ref|YP_008147363.1|   0.0000000000034   0.00032   748-831   1ux6 A:813-936  
gi|521461001|ref|YP_008147721.1|   0.000000000248   0.0015   202-243   1ux6 A:813-936  
gi|521461627|ref|YP_008148402.1|   0.0000000000484   0.0022   328-436   1ux6 A:813-936  
gi|521462583|ref|YP_008149453.1|   0.0000000000157   0.00071   346-432   1ux6 A:813-936  
gi|521462972|ref|YP_008149894.1|   0.000000000183   0.0016   329-441   1ux6 A:813-936  
gi|521463192|ref|YP_008150153.1|   0.00000000405   0.0013   197-233   1ux6 A:813-936  
gi|521463561|ref|YP_008150559.1|   0.0000000981   0.0085   321-371   1ux6 A:813-936  
gi|521463587|ref|YP_008150589.1|   0.00458   0.0069   38-110   1ux6 A:813-936  
gi|521463719|ref|YP_008150732.1|   0.00000000000432   0.001   304-390   1ux6 A:813-936  
  0.00000000615   0.0021   395-456   1ux6 A:813-936  
gi|521463956|ref|YP_008151011.1|   0.0000968   0.015   59-122   1ux6 A:813-936  
gi|521463998|ref|YP_008151057.1|   0.0000000706   0.0012   371-423   1ux6 A:813-936  
gi|521464706|ref|YP_008151853.1|   0.00131   0.0006   146-251   1ux6 A:813-936  
gi|521465388|ref|YP_008152606.1|   0.0000000000379   0.00073   405-493   1ux6 A:813-936  
  0.000000000837   0.00092   305-393   1ux6 A:813-936  
gi|521465572|ref|YP_008152801.1|   0.00144   0.012   213-246   1ux6 A:813-936  
gi|521466151|ref|YP_008153441.1|   0.00000000275   0.00063   318-402   1ux6 A:813-936  
  0.00000144   0.00073   404-502   1ux6 A:813-936  
gi|521466231|ref|YP_008153530.1|   0.000000798   0.0012   295-364   1ux6 A:813-936  
gi|521466616|ref|YP_008153944.1|   0.000000144   0.002   612-651   1ux6 A:813-936  
gi|521467057|ref|YP_008154420.1|   0.00000000000000327   0.00013   1097-1174   1ux6 A:813-936  
gi|521467645|ref|YP_008155085.1|   0.000000068   0.00053   459-559   1ux6 A:813-936  
  0.0000654   0.00072   374-491   1ux6 A:813-936  
gi|521468201|ref|YP_008155706.1|   0.0000000000000471   0.00051   366-458   1ux6 A:813-936  
  0.000000000000118   0.0013   305-395   1ux6 A:813-936  
gi|521469086|ref|YP_008156671.1|   0.00706   0.0085   327-378   1ux6 A:813-936  
gi|521469163|ref|YP_008156756.1|   0.00000000000000144   0.0014   356-442   1ux6 A:813-936  
  0.0000000235   0.0029   452-506   1ux6 A:813-936  
gi|521469179|ref|YP_008156772.1|   0.000000000262   0.0011   24-110   1ux6 A:813-936  
  0.0000000011   0.0016   172-273   1ux6 A:813-936  
  0.00248   0.0048   111-199   1ux6 A:813-936  

Myxococcus stipitatus DSM 14675 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|442318351|ref|YP_007358372.1|   4.05e-22   0.0000476   89-189   1ux6 A:813-936  
  0.0000000000000105   0.00016   196-274   1ux6 A:813-936  
 
Weak hits:
gi|442317051|ref|YP_007357072.1|   0.0183   0.022   26-59   1ux6 A:813-936  
gi|442317909|ref|YP_007357930.1|   0.000000000288   0.00019   590-690   1ux6 A:813-936  
gi|442318350|ref|YP_007358371.1|   0.00288   0.011   300-414   1ux6 A:813-936  
gi|442318352|ref|YP_007358373.1|   0.000405   0.0049   392-498   1ux6 A:813-936  
gi|442318353|ref|YP_007358374.1|   0.00000183   0.004   322-408   1ux6 A:813-936  
gi|442318567|ref|YP_007358588.1|   0.00128   0.026   57-90   1ux6 A:813-936  
gi|442318787|ref|YP_007358808.1|   0.00000000183   0.0007   1616-1742   1ux6 A:813-936  
gi|442319362|ref|YP_007359383.1|   0.000000000334   0.0015   336-420   1ux6 A:813-936  
gi|442319679|ref|YP_007359700.1|   0.00000000379   0.0023   343-449   1ux6 A:813-936  
gi|442320669|ref|YP_007360690.1|   0.0000000209   0.00087   327-450   1ux6 A:813-936  
gi|442320914|ref|YP_007360935.1|   0.0000000000000641   0.00033   546-649   1ux6 A:813-936  
gi|442322628|ref|YP_007362649.1|   0.00000000294   0.002   131-215   1ux6 A:813-936  
gi|442323124|ref|YP_007363145.1|   0.00000000157   0.0017   2255-2345   1ux6 A:813-936  
  0.00131   0.0026   1523-1612   1ux6 A:813-936  
gi|442323723|ref|YP_007363744.1|   0.00000000000981   0.0014   323-408   1ux6 A:813-936  
gi|442324419|ref|YP_007364440.1|   0.00000209   0.0082   327-378   1ux6 A:813-936  

Vibrio sp. EJY3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|375262789|ref|YP_005025019.1|   1.05e-17   0.0000815   766-865   1ux6 A:813-936  
  0.0000000000109   0.00024   718-788   1ux6 A:813-936  
 
Weak hits:
gi|375265573|ref|YP_005023016.1|   0.000000144   0.0058   22-77   1ux6 A:813-936  

Alcanivorax dieselolei B5 has 2 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|407696314|ref|YP_006821102.1|   2.88e-34   0.0000112   88-202   1ux6 A:813-936  
  4.84e-17   0.0000717   198-292   1ux6 A:813-936  
 
Weak hits:
gi|407694794|ref|YP_006819582.1|   0.0000235   0.011   228-283   1ux6 A:813-936  
gi|407694797|ref|YP_006819585.1|   0.00157   0.0076   192-246   1ux6 A:813-936  
gi|407695306|ref|YP_006820094.1|   4.45e-18   0.0032   158-220   1ux6 A:813-936  
gi|407696315|ref|YP_006821103.1|   0.00000122   0.0094   187-216   1ux6 A:813-936  

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Select to display   Genome       Domains   Proteins
No Yes ALL   7884 7884
No Yes Homo sapiens 76_38 Human 15 12
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 6 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 7 5
No Yes Pongo abelii 76_2 Sumatran orangutan 7 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 6 5
No Yes Papio anubis 76 Olive baboon 6 5
No Yes Macaca mulatta 76_1 Rhesus monkey 8 6
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 14 12
No Yes Otolemur garnettii 76_3 Small-eared galago 7 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 4 3
No Yes Rattus norvegicus 76_5.0 Norway rat 6 5
No Yes Mus musculus 76_38 House mouse 8 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 4 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 6 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 6 5
No Yes Cavia porcellus 76_3 Domestic guinea pig 8 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 5 4
No Yes Ochotona princeps 76 American pika 5 4
No Yes Tupaia belangeri 76 Northern tree shrew 3 3
No Yes Sus scrofa 76_10.2 Pig 7 6
No Yes Bos taurus 76_3.1 Cattle 7 5
No Yes Ovis aries 76_3.1 Sheep 8 5
No Yes Vicugna pacos 76_1 Alpaca 2 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 6 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 6 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 8 6
No Yes Canis familiaris 76_3.1 Dog 7 6
No Yes Felis catus 76_6.2 Domestic cat 6 5
No Yes Equus caballus 76_2 Horse 7 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 6 5
No Yes Pteropus vampyrus 76_1 Large flying fox 4 3
No Yes Sorex araneus 76_1 European shrew 4 3
No Yes Erinaceus europaeus 76 Western European hedgehog 4 3
No Yes Procavia capensis 76_1 Cape rock hyrax 7 5
No Yes Loxodonta africana 76_3 African savanna elephant 8 7
No Yes Echinops telfairi 76 Small Madagascar hedgehog 6 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 5 4
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 3 3
No Yes Macropus eugenii 76_1.0 Tammar wallaby 5 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 7 6
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 6 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 3 3
No Yes Saccoglossus kowalevskii v3.0   7 4
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 5 3
No Yes Gallus gallus 76_4 Chicken 5 4
No Yes Anas platyrhynchos 76_1.0 Mallard 8 5
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 7 5
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 5
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 6 5
No Yes Anolis carolinensis 76_2.0 Green anole 7 5
No Yes Xenopus laevis African clawed frog 15 12
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 6 5
No Yes Latimeria chalumnae 76_1 Coelacanth 6 5
No Yes Lepisosteus oculatus 76 Spotted gar 8 7
No Yes Gadus morhua 76_1 Atlantic cod 10 8
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 7 6
No Yes Takifugu rubripes 76_4 Torafugu 28 21
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 10 9
No Yes Oryzias latipes 76_1 Japanese medaka 12 11
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 12 8
No Yes Poecilia formosa 76 Amazon molly 15 9
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 17 10
No Yes Astyanax mexicanus 76 Mexican tetra 10 8
No Yes Danio rerio 76_9 Zebrafish 18 15
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 11 10
No Yes Ciona intestinalis 76 Vase tunicate 4 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 5 5
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 2 2
No Yes Lottia gigantea Owl limpet 1 1
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   3 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   2 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 3 3
No Yes Drosophila erecta 1.3   2 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 7 6
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   2 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 2 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Acropora digitifera v1.0   6 5
No Yes Nematostella vectensis 1.0 Starlet sea anemone 6 4
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   2 1
No Yes Trichoplax adhaerens   1 1
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Desulfatibacillum alkenivorans AK-01   2 2
No Yes Sorangium cellulosum 'So ce 56'   7 4
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Cellvibrio japonicus Ueda107   11 2
No Yes Alcanivorax borkumensis SK2   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 11 8
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 3 3
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Sorangium cellulosum So0157-2   11 5
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Alcanivorax dieselolei B5   2 1
No Yes Homo sapiens 75_37 (old version GRC) Human 13 11
No Yes Homo sapiens (NCBI version) Human 6 5
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 6 5
No Yes Homo sapiens 69_37 Human 6 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 5 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 7 5
No Yes Pongo abelii 69_2 Sumatran orangutan 5 4
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 6 5
No Yes Macaca mulatta 69_1 Rhesus monkey 6 5
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 6 5
No Yes Otolemur garnettii 69_3 Small-eared galago 7 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 4 3
No Yes Rattus norvegicus 69_3.4 Norway rat 4 3
No Yes Mus musculus 69_38 House mouse 6 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 4 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 6 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 8 5
No Yes Oryctolagus cuniculus 69_2 Rabbit 6 4
No Yes Ochotona princeps 69 American pika 5 4
No Yes Tupaia belangeri 69 Northern tree shrew 3 3
No Yes Sus scrofa 69_10.2 Pig 6 5
No Yes Bos taurus 69_3.1 Cattle 7 5
No Yes Vicugna pacos 69_1 Alpaca 2 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 6 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 6 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 6 5
No Yes Canis familiaris 69_3.1 Dog 6 5
No Yes Felis catus 69 Domestic cat 4 3
No Yes Equus caballus 69_2 Horse 7 5
No Yes Myotis lucifugus 69_2.0 Little brown bat 6 5
No Yes Pteropus vampyrus 69_1 Large flying fox 4 3
No Yes Sorex araneus 69_1 European shrew 4 3
No Yes Erinaceus europaeus 69 Western European hedgehog 4 3
No Yes Procavia capensis 69_1 Cape rock hyrax 7 5
No Yes Loxodonta africana 69_3 African savanna elephant 6 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 6 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 3 3
No Yes Macropus eugenii 69_1.0 Tammar wallaby 5 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 6 5
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 6 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 3 3
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 69_2 Turkey 5 3
No Yes Gallus gallus 69_2 Chicken 5 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 7 5
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 6 5
No Yes Anolis carolinensis 69_2.0 Green anole 7 5
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 6 5
No Yes Latimeria chalumnae 69_1 Coelacanth 6 5
No Yes Gadus morhua 69_1 Atlantic cod 10 8
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 7 6
No Yes Takifugu rubripes 69_4 Torafugu 9 7
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 9 8
No Yes Oryzias latipes 69_1 Japanese medaka 9 8
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 12 8
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 13 8
No Yes Danio rerio 69_9 Zebrafish 12 10
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 4
No Yes Ciona intestinalis 69 Vase tunicate 4 4
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   2 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   11 11
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   3384 2383
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   251 198
No Yes Uniprot 2018_03 genome   2533 1766
No Yes Global Ocean Sampling Expedition (GOS)   96 65
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   6 6
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   8 8
No Yes TargetDB (Targets)   2 1

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