SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > DR1885-like metal-binding protein domains in all bacterial genomes


DR1885-like metal-binding protein family domain assignments
in
all bacterial genomes

Assignment details

(show help)

5 selected genomes have 5 significant domains in 5 proteins.


Deinococcus gobiensis I-0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386857316|ref|YP_006261493.1|   1.7e-27   0.0000447   1-107   1x9l A:  
 
Weak hits:
gi|386856912|ref|YP_006261089.1|   0.000955   0.02   45-122   1x9l A:  

Deinococcus deserti VCD115 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|226355239|ref|YP_002784979.1|   1.31e-29   0.0000514   16-157   1x9l A:  

Deinococcus geothermalis DSM 11300 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|94984688|ref|YP_604052.1|   2.48e-34   0.0000254   3-160   1x9l A:  

Deinococcus proteolyticus MRP has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|325282328|ref|YP_004254869.1|   5.23e-33   0.0000256   89-228   1x9l A:  

Deinococcus radiodurans R1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|15806885|ref|NP_295608.1|   1.44e-38   0.000000198   46-177   1x9l A:  
 
Weak hits:
gi|15806988|ref|NP_295713.1|   0.0379   0.0051   75-128   1x9l A:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a DR1885-like metal-binding protein domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   90 90
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   1 1
No Yes NCBI 2017_08 genome   45 45
No Yes STRING v9.0.5 (STRING)   3 3
No Yes Uniprot 2018_03 genome   25 25
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4 4
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.