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Rhamnogalacturonase B, RhgB, middle domain family domain assignments
in
all eukaryotic genomes

Assignment details

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25 selected genomes have 26 significant domains in 26 proteins.

Showing genomes 1 to 25 of 48
  1 2   Next Last

Tulasnella calospora AL13/4D v1.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Tulca1|212420|MIX2826_12_11   0.000000019   0.0000605   278-358   1nkg A:251-337  
jgi|Tulca1|228694|MIX19100_23_26   0.0000000000000255   0.0000615   274-355   1nkg A:251-337  
 
Weak hits:
jgi|Tulca1|114291|CE27046_10133   0.000412   0.027   41-91   1nkg A:251-337  
jgi|Tulca1|41219|gw1.694.1.1   0.000628   0.027   29-76   1nkg A:251-337  

Daldinia eschscholzii EC12 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|DalEC12_1|241200|CE162438_2040   0.0000000000102   0.0000573   277-359   1nkg A:251-337  
 
Weak hits:
jgi|DalEC12_1|299821|MIX649_617_45   0.00000392   0.017   260-333   1nkg A:251-337  
jgi|DalEC12_1|303628|MIX4456_168_32   0.00000018   0.013   334-430   1nkg A:251-337  
jgi|DalEC12_1|322112|fgenesh1_kg.38_#_32_#_Locus1518v2rpkm14.08   0.0141   0.018   63-115   1nkg A:251-337  
jgi|DalEC12_1|367654|estExt_Genemark1.C_160073   0.00373   0.011   341-427   1nkg A:251-337  
jgi|DalEC12_1|71364|e_gw1.64.63.1   0.0000000000589   0.00013   274-354   1nkg A:251-337  

Apiospora montagnei NRRL 25634 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Apimo1|75106|fgenesh1_pm.178_#_1   0.000000000000216   0.0000723   275-357   1nkg A:251-337  
 
Weak hits:
jgi|Apimo1|121869|estExt_Genemark1.C_490037   0.00000000981   0.066   304-402   1nkg A:251-337  
jgi|Apimo1|220958|estExt_Genewise1Plus.C_330073   0.0000000000687   0.0015   277-356   1nkg A:251-337  
jgi|Apimo1|222542|estExt_Genewise1Plus.C_420154   0.000000000687   0.014   292-370   1nkg A:251-337  
jgi|Apimo1|36517|fgenesh1_pg.37_#_83   0.0000785   0.012   348-439   1nkg A:251-337  

Magnaporthe poae ATCC 64411 22 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
MAPG_01584T0   0.00000000000141   0.0001   287-369   1nkg A:251-337  

Podospora anserina has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
Pa_4_9730|chrm4_SC3|Putative   0.00000000000000314   0.0000685   282-362   1nkg A:251-337  

Sporotrichum thermophile ATCC 42464 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Spoth1|51766|e_gw1.5.438.1   1.29e-16   0.0000615   281-362   1nkg A:251-337  
 
Weak hits:
jgi|Spoth1|56650|e_gw1.7.876.1   0.0589   0.026   76-127   1nkg A:251-337  

Chaetomium globosum CBS 148.51 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
CHGT_08730   0.00000000000000942   0.0000661   281-362   1nkg A:251-337  
 
Weak hits:
CHGT_07648   0.00000000706   0.0061   321-419   1nkg A:251-337  

Neurospora tetrasperma has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Neute1|155009|estExt_fgenesh1_pg.C_20343   0.00000000000000844   0.0001   282-363   1nkg A:251-337  

Neurospora discreta FGSC 8579 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Neudi1|79877|estExt_Genewise1.C_60632   0.0000000000000163   0.0000762   282-363   1nkg A:251-337  

Neurospora crassa OR74A has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
NCU05598T0   0.0000000000000049   0.0001   282-363   1nkg A:251-337  

Verticillium albo-atrum VaMs.102 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
VDBG_09652T0   3.14e-16   0.0000735   213-294   1nkg A:251-337  
 
Weak hits:
VDBG_01209T0   0.000000000373   0.013   257-352   1nkg A:251-337  
VDBG_05470T0   0.0000333   0.011   241-327   1nkg A:251-337  
VDBG_08248T0   0.00000216   0.0079   326-413   1nkg A:251-337  

Verticillium dahliae VdLs.17 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
VDAG_09063T0   0.00000000000000196   0.0000709   278-359   1nkg A:251-337  
 
Weak hits:
VDAG_07119T0   0.00000883   0.011   338-427   1nkg A:251-337  
VDAG_10443T0   0.00000392   0.0074   337-423   1nkg A:251-337  

Glomerella graminicola 22 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
EFQ36381   0.00000000000000706   0.0000698   285-365   1nkg A:251-337  
 
Weak hits:
EFQ30725   0.000000804   0.011   344-438   1nkg A:251-337  
EFQ34493   0.00000000255   0.00016   271-352   1nkg A:251-337  

Didymella exigua CBS 183.55 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Didex1|97257|fgenesh1_pm.1_#_371   0.000000000000451   0.0000396   276-358   1nkg A:251-337  
 
Weak hits:
jgi|Didex1|137184|CE32056_506   0.0000000353   0.019   340-436   1nkg A:251-337  
jgi|Didex1|281396|CE176268_1798   0.000000000412   0.012   289-387   1nkg A:251-337  
jgi|Didex1|59511|e_gw1.9.283.1   0.00000129   0.017   364-457   1nkg A:251-337  
jgi|Didex1|75422|e_gw1.50.129.1   0.000000000255   0.021   299-397   1nkg A:251-337  

Setosphaeria turcica v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Settu1|99248|e_gw1.8.75.1   0.000000000000333   0.0000987   279-361   1nkg A:251-337  
 
Weak hits:
jgi|Settu1|101196|e_gw1.10.858.1   0.0000165   0.0084   338-437   1nkg A:251-337  
jgi|Settu1|150577|estExt_Genewise1Plus.C_190135   0.00000000706   0.0033   282-360   1nkg A:251-337  
jgi|Settu1|154354|fgenesh1_pm.3_#_178   0.0000000216   0.011   307-385   1nkg A:251-337  

Cochliobolus miyabeanus ATCC 44560 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Cocmi1|107748|e_gw1.218.42.1   0.00000000000765   0.0000648   287-369   1nkg A:251-337  
 
Weak hits:
jgi|Cocmi1|26890|fgenesh1_pg.78_#_9   0.0000000235   0.00062   283-361   1nkg A:251-337  
jgi|Cocmi1|28756|fgenesh1_pg.136_#_2   0.00000000333   0.0041   337-435   1nkg A:251-337  
jgi|Cocmi1|84097|e_gw1.12.75.1   0.00000000353   0.016   306-381   1nkg A:251-337  

Cochliobolus victoriae FI3 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Cocvi1|87168|e_gw1.7.74.1   0.0000000000114   0.0000638   280-362   1nkg A:251-337  
 
Weak hits:
jgi|Cocvi1|26106|gm1.4710_g   0.0000000155   0.0006   283-361   1nkg A:251-337  
jgi|Cocvi1|91675|e_gw1.18.70.1   0.0000000235   0.0046   338-435   1nkg A:251-337  
jgi|Cocvi1|99409|e_gw1.43.117.1   0.000000000647   0.034   303-402   1nkg A:251-337  

Cochliobolus carbonum 26-R-13 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Cocca1|37792|fgenesh1_pm.102_#_2   0.0000000000114   0.0000638   280-362   1nkg A:251-337  
 
Weak hits:
jgi|Cocca1|1229|gm1.1229_g   0.00000000255   0.029   305-401   1nkg A:251-337  
jgi|Cocca1|3903|gm1.3903_g   0.0000000235   0.0046   338-435   1nkg A:251-337  
jgi|Cocca1|83548|e_gw1.7.68.1   0.0000000155   0.0006   283-361   1nkg A:251-337  

Cochliobolus heterostrophus has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|CocheC5_1|82703|estExt_Genewise1.C_40322   0.0000000000451   0.0000594   287-369   1nkg A:251-337  
 
Weak hits:
jgi|CocheC5_1|110283|estExt_Genewise1Plus.C_160557   0.000000000294   0.026   306-406   1nkg A:251-337  
jgi|CocheC5_1|21679|fgenesh1_pg.C_scaffold_15000067   0.000000133   0.00077   283-361   1nkg A:251-337  
jgi|CocheC5_1|98631|estExt_Genewise1Plus.C_20256   0.000000141   0.0067   338-434   1nkg A:251-337  

Alternaria brassicicola has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
AB08832.1   0.0000000000112   0.0000837   68-149   1nkg A:251-337  
 
Weak hits:
AB08526.1   0.0000000018   0.03   296-393   1nkg A:251-337  
AB10029.1   0.0000000883   0.011   339-435   1nkg A:251-337  

Cochliobolus lunatus m118 v2.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Coclu2|110333|e_gw1.7.1297.1   0.000000000000628   0.0000636   278-359   1nkg A:251-337  
 
Weak hits:
jgi|Coclu2|124580|e_gw1.18.542.1   0.00000000333   0.013   338-435   1nkg A:251-337  
jgi|Coclu2|40105|gm1.8855_g   0.00000000196   0.0032   276-361   1nkg A:251-337  

Pyrenophora teres f. teres 22 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
EFQ88177   0.0000000000569   0.0000837   278-359   1nkg A:251-337  
 
Weak hits:
EFQ87489   0.000000000167   0.021   296-393   1nkg A:251-337  
EFQ90809   0.00000000687   0.0028   281-360   1nkg A:251-337  
EFQ96267   0.000177   0.0087   230-327   1nkg A:251-337  

Pyrenophora tritici-repentis has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
PTRT_07312   0.0000000000196   0.0000807   279-360   1nkg A:251-337  
 
Weak hits:
PTRT_02234   0.0000000000432   0.021   296-393   1nkg A:251-337  
PTRT_02618   0.0000000108   0.003   234-312   1nkg A:251-337  
PTRT_05420   0.000785   0.0087   342-440   1nkg A:251-337  

Stagonospora nodorum has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
SNOT_00414   0.000000000000118   0.0000661   276-357   1nkg A:251-337  
 
Weak hits:
SNOT_02633   0.00000000000451   0.016   302-398   1nkg A:251-337  
SNOT_05946   0.000000000392   0.00012   275-353   1nkg A:251-337  
SNOT_11242   0.0000000167   0.0063   340-436   1nkg A:251-337  

Zasmidium cellare ATCC 36951 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
jgi|Zasce1|64658|fgenesh1_pm.9_#_31   0.000000000000294   0.000095   275-356   1nkg A:251-337  
 
Weak hits:
jgi|Zasce1|23481|gm1.7843_g   0.00000196   0.0084   343-442   1nkg A:251-337  

  1 2   Next Last
Showing genomes 1 to 25 of 48

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Select to display   Genome       Domains   Proteins
No Yes ALL   346 346
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes NCBI 2017_08 genome   50 50
No Yes STRING v9.0.5 (STRING)   10 10
No Yes Uniprot 2018_03 genome   187 187
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   15 15

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