SUPERFAMILY 1.75 HMM library and genome assignments server

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Family 28 carbohydrate binding module, CBM28 family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   151 151
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium cellulovorans 743B   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes NCBI 2017_08 genome   53 53
No Yes STRING v9.0.5 (STRING)   3 3
No Yes Uniprot 2018_03 genome   52 52
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   17 17

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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