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  Home > Genomes > Ornithine cyclodeaminase-like domains in all archaeal genomes


Ornithine cyclodeaminase-like family domain assignments
in
all archaeal genomes

Assignment details

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25 selected genomes have 34 significant domains in 34 proteins.

Showing genomes 1 to 25 of 89
  1 2 3 4   Next Last

Candidatus Caldiarchaeum subterraneum has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|557693679|ref|YP_008796733.1|   5.04e-90   0.00000372   14-326   1vll A:  
gi|557693684|ref|YP_008796738.1|   1.1e-73   0.0000411   1-325   1vll A:  
gi|557694123|ref|YP_008797177.1|   3.8e-91   0.00000197   6-324   1vll A:  

Candidatus Korarchaeum cryptofilum OPF8 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|170290410|ref|YP_001737226.1|   8.93e-75   0.00000193   3-323   1vll A:  

Fervidicoccus fontis Kam940 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|385805825|ref|YP_005842223.1|   1.93e-81   0.0000072   5-322   1vll A:  

Pyrolobus fumarii 1A has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|347523389|ref|YP_004780959.1|   1.58e-98   0.000000101   1-316   1vll A:  

Ignisphaera aggregans DSM 17230 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|305663525|ref|YP_003859813.1|   2.43e-104   0.00000008   2-328   1vll A:  

Metallosphaera sedula DSM 5348 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|146302976|ref|YP_001190292.1|   1.37e-63   0.0000889   1-304   1vll A:  
 
Weak hits:
gi|146304562|ref|YP_001191878.1|   5.52e-69   0.00019   1-295   1vll A:  

Acidianus hospitalis W1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|332796942|ref|YP_004458442.1|   1.05e-69   0.0000961   1-295   1vll A:  
 
Weak hits:
gi|332796743|ref|YP_004458243.1|   2.38e-60   0.00015   2-305   1vll A:  

Sulfolobus tokodaii str. 7 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|15922506|ref|NP_378175.1|   3.5e-68   0.0000601   43-347   1vll A:  
gi|15922666|ref|NP_378335.1|   5.84e-68   0.000052   1-304   1vll A:  

Sulfolobus islandicus Y.N.15.51 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|229581713|ref|YP_002840112.1|   1.62e-69   0.0001   1-308   1vll A:  
 
Weak hits:
gi|229581317|ref|YP_002839716.1|   1.56e-57   0.0002   1-306   1vll A:  

Sulfolobus solfataricus P2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|15897312|ref|NP_341917.1|   2.56e-69   0.0000669   1-308   1vll A:  
 
Weak hits:
gi|15899941|ref|NP_344546.1|   1.24e-53   0.00035   1-306   1vll A:  

Sulfolobus acidocaldarius DSM 639 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|70606793|ref|YP_255663.1|   6.85e-66   0.0000583   3-306   1vll A:  
gi|70608073|ref|YP_256943.1|   3.73e-72   0.0000601   1-307   1vll A:  

Thermofilum sp. 1910b has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|530781191|ref|YP_008432999.1|   8.57e-95   0.000000612   2-339   1x7d A:  

Thermofilum pendens Hrk 5 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|119719126|ref|YP_919621.1|   1.88e-92   0.000000563   2-336   1x7d A:  

Vulcanisaeta moutnovskia 768-28 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|325967735|ref|YP_004243927.1|   2.66e-88   0.0000214   2-326   1vll A:  
gi|325969422|ref|YP_004245614.1|   4.57e-81   0.0000257   5-317   1vll A:  

Vulcanisaeta distributa DSM 14429 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|307595188|ref|YP_003901505.1|   1.14e-81   0.0000181   1-314   1vll A:  
gi|307595870|ref|YP_003902187.1|   5.17e-91   0.000023   2-326   1vll A:  

Caldivirga maquilingensis IC-167 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|159041728|ref|YP_001540980.1|   3.05e-75   0.0000197   1-313   1vll A:  
 
Weak hits:
gi|159040830|ref|YP_001540082.1|   5.62e-64   0.00011   1-301   1vll A:  

Thermoproteus uzoniensis 768-20 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|327310169|ref|YP_004337066.1|   9.8e-77   0.0000199   1-311   1vll A:  
 
Weak hits:
gi|327311292|ref|YP_004338189.1|   3.07e-55   0.00068   5-286   1vll A:  

Thermoproteus tenax Kra 1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|352681834|ref|YP_004892358.1|   5.32e-81   0.000025   2-312   1vll A:  
 
Weak hits:
gi|352683237|ref|YP_004893761.1|   4.49e-54   0.00062   5-286   1vll A:  

halophilic archaeon DL31 has 4 significant domains in 4 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|345004731|ref|YP_004807584.1|   2.26e-72   0.0000838   1-321   1vll A:  
gi|345005771|ref|YP_004808624.1|   7.56e-78   0.0000355   2-323   1vll A:  
gi|345006303|ref|YP_004809156.1|   2.04e-88   0.000000296   1-325   1vll A:  
gi|345007085|ref|YP_004809937.1|   4.61e-76   0.0000216   4-310   1vll A:  
 
Weak hits:
gi|345005677|ref|YP_004808530.1|   0.000000236   0.0056   1-90   1vll A:  

Methanocella arvoryzae MRE50 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|147920078|ref|YP_686163.1|   9.38e-96   0.000000111   2-323   1vll A:  

Methanocella conradii HZ254 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|383320836|ref|YP_005381677.1|   5.84e-103   0.000000105   2-324   1vll A:  

Methanocella paludicola SANAE has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|282162997|ref|YP_003355382.1|   9.2e-101   0.000000108   2-324   1vll A:  

Methanosaeta harundinacea 6Ac has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386001849|ref|YP_005920148.1|   6.78e-99   0.0000000625   1-325   1vll A:  

Methanosaeta thermophila PT has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|116754025|ref|YP_843143.1|   1.71e-105   0.0000000353   1-323   1vll A:  

Methanosaeta concilii GP6 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|330507068|ref|YP_004383496.1|   5.82e-105   0.0000000317   1-322   1vll A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   45661 45661
No Yes Homo sapiens 76_38 Human 2 2
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Mus musculus 76_38 House mouse 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Saccoglossus kowalevskii v3.0   4 4
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus laevis African clawed frog 2 2
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 1 1
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 2
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 1 1
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Entamoeba invadens 1.2   1 1
No Yes Picea abies Norway spruce 1 1
No Yes Carica papaya Papaya 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 2 2
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Giardia lamblia 2.3   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Trichomonas vaginalis   2 2
No Yes Emiliania huxleyi CCMP1516   4 4
No Yes Thermobaculum terrenum ATCC BAA-798   2 2
No Yes Slackia heliotrinireducens DSM 20476   1 1
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Ilumatobacter coccineus   1 1
No Yes Blastococcus saxobsidens DD2   2 2
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces bingchenggensis BCW-1   2 2
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   2 2
No Yes Microlunatus phosphovorus NM-1   2 2
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   2 2
No Yes Actinoplanes sp. N902-109   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Corynebacterium resistens DSM 45100   1 1
No Yes Corynebacterium aurimucosum ATCC 700975   1 1
No Yes Corynebacterium pseudotuberculosis 316   1 1
No Yes Kytococcus sedentarius DSM 20547   1 1
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Isoptericola variabilis 225   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Rothia mucilaginosa DY-18   1 1
No Yes Rothia dentocariosa ATCC 17931   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Dehalococcoides sp. BAV1   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Erysipelothrix rhusiopathiae str. Fujisawa   1 1
No Yes Clostridiales genomosp. BVAB3 str. UPII9-5   1 1
No Yes Thermaerobacter marianensis DSM 12885   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Oscillibacter valericigenes Sjm18-20   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium difficile 630   1 1
No Yes Clostridium sticklandii DSM 519   1 1
No Yes Coprococcus sp. ART55/1   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Thermosediminibacter oceani DSM 16646   1 1
No Yes Tepidanaerobacter acetatoxydans Re1   1 1
No Yes Aerococcus urinae ACS-120-V-Col10a   1 1
No Yes Tetragenococcus halophilus NBRC 12172   1 1
No Yes Enterococcus sp. 7L76   1 1
No Yes Enterococcus hirae ATCC 9790   1 1
No Yes Enterococcus faecium Aus0004   1 1
No Yes Enterococcus faecalis 62   2 2
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus salivarius CECT 5713   1 1
No Yes Lactobacillus fermentum IFO 3956   1 1
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Streptococcus parauberis KCTC 11537   1 1
No Yes Brevibacillus brevis NBRC 100599   2 2
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Geobacillus thermodenitrificans NG80-2   2 2
No Yes Halobacillus halophilus DSM 2266   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus clausii KSM-K16   1 1
No Yes Bacillus coagulans 2-6   1 1
No Yes Staphylococcus pseudintermedius HKU10-03   2 2
No Yes Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305   1 1
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Staphylococcus haemolyticus JCSC1435   1 1
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Staphylococcus carnosus subsp. carnosus TM300   1 1
No Yes Staphylococcus aureus subsp. aureus JH1   1 1
No Yes Staphylococcus aureus   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Parachlamydia acanthamoebae UV-7   1 1
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Thermovirga lienii DSM 17291   5 5
No Yes Aminobacterium colombiense DSM 12261   3 3
No Yes Thermanaerovibrio acidaminovorans DSM 6589   1 1
No Yes Anaerobaculum mobile DSM 13181   3 3
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Treponema denticola ATCC 35405   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   3 3
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Desulfobacca acetoxidans DSM 11109   1 1
No Yes Desulfomicrobium baculatum DSM 4028   1 1
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   3 3
No Yes Corallococcus coralloides DSM 2259   3 3
No Yes Myxococcus xanthus DK 1622   2 2
No Yes Myxococcus fulvus HW-1   3 3
No Yes Dechloromonas aromatica RCB   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   3 3
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Dechlorosoma suillum PS   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   2 2
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   3 3
No Yes Cupriavidus necator N-1   4 4
No Yes Ralstonia eutropha H16   2 2
No Yes Ralstonia solanacearum CFBP2957   2 2
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   2 2
No Yes Burkholderia ambifaria AMMD   3 3
No Yes Burkholderia cenocepacia HI2424   3 3
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   2 2
No Yes Burkholderia gladioli BSR3   3 3
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   2 2
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   4 4
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   2 2
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Acidovorax citrulli AAC00-1   2 2
No Yes Acidovorax avenae subsp. avenae ATCC 19860   2 2
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Taylorella asinigenitalis MCE3   2 2
No Yes Taylorella equigenitalis MCE9   2 2
No Yes Bordetella petrii DSM 12804   2 2
No Yes Bordetella avium 197N   2 2
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   3 3
No Yes Achromobacter xylosoxidans A8   4 4
No Yes Achromobacter xylosoxidans   2 2
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Sphingobium sp. SYK-6   1 1
No Yes Sphingomonas wittichii RW1   2 2
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Phaeobacter gallaeciensis 2.10   2 2
No Yes Pseudovibrio sp. FO-BEG1   4 4
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   2 2
No Yes Ruegeria pomeroyi DSS-3   4 4
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   3 3
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Rhodospirillum rubrum F11   1 1
No Yes Azospirillum lipoferum 4B   2 2
No Yes Azospirillum sp. B510   3 3
No Yes Azospirillum brasilense Sp245   2 2
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Starkeya novella DSM 506   2 2
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium sp. 4-46   2 2
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   4 4
No Yes Methylobacterium radiotolerans JCM 2831   2 2
No Yes Ochrobactrum anthropi ATCC 49188   2 2
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   7 7
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   4 4
No Yes Genome sequence of Rhizobium sp. strain IRBG74   2 2
No Yes Rhizobium etli CIAT 652   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   5 5
No Yes Agrobacterium tumefaciens str. C58   3 3
No Yes Agrobacterium radiobacter K84   5 5
No Yes Agrobacterium sp. H13-3   2 2
No Yes Agrobacterium vitis S4   3 3
No Yes Mesorhizobium sp. BNC1   4 4
No Yes Mesorhizobium opportunistum WSM2075   4 4
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   3 3
No Yes Mesorhizobium loti MAFF303099   3 3
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Methylocystis sp. SC2   1 1
No Yes Gallibacterium anatis UMN179   1 1
No Yes Oceanimonas sp. GK1   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Psychromonas sp. CNPT3   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Marinobacter sp. BSs20148   2 2
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   3 3
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes Halomonas elongata DSM 2581   2 2
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Coxiella burnetii Dugway 5J108-111   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Legionella pneumophila str. Corby   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Pseudomonas sp. TKP   3 3
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 2
No Yes Pseudomonas entomophila L48   2 2
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas putida F1   2 2
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   2 2
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   2 2
No Yes Psychrobacter sp. G   3 3
No Yes Psychrobacter sp. PRwf-1   1 1
No Yes Psychrobacter arcticus 273-4   1 1
No Yes Psychrobacter cryohalolentis K5   3 3
No Yes Acinetobacter oleivorans DR1   2 2
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Francisella noatunensis subsp. orientalis str. Toba 04   1 1
No Yes Francisella sp. TX077308   1 1
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Francisella tularensis subsp. tularensis WY96-3418   1 1
No Yes Francisella cf. novicida 3523   1 1
No Yes Francisella novicida U112   1 1
No Yes Candidatus Caldiarchaeum subterraneum   3 3
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Pyrolobus fumarii 1A   1 1
No Yes Ignisphaera aggregans DSM 17230   1 1
No Yes Metallosphaera sedula DSM 5348   1 1
No Yes Acidianus hospitalis W1   1 1
No Yes Sulfolobus tokodaii str. 7   2 2
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Sulfolobus solfataricus P2   1 1
No Yes Sulfolobus acidocaldarius DSM 639   2 2
No Yes Thermofilum sp. 1910b   1 1
No Yes Thermofilum pendens Hrk 5   1 1
No Yes Vulcanisaeta moutnovskia 768-28   2 2
No Yes Vulcanisaeta distributa DSM 14429   2 2
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Thermoproteus tenax Kra 1   1 1
No Yes halophilic archaeon DL31   4 4
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanohalobium evestigatum Z-7303   1 1
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanoregula boonei 6A8   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Methanopyrus kandleri AV19   1 1
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   2 2
No Yes Halopiger xanaduensis SH-6   2 2
No Yes Haloterrigena turkmenica DSM 5511   4 4
No Yes Natrinema sp. J7-2   2 2
No Yes Natrialba magadii ATCC 43099   4 4
No Yes Halorubrum lacusprofundi ATCC 49239   2 2
No Yes Haloquadratum walsbyi DSM 16790   2 2
No Yes Halogeometricum borinquense DSM 11551   3 3
No Yes Haloferax mediterranei ATCC 33500   3 3
No Yes Haloferax volcanii DS2   3 3
No Yes Halomicrobium mukohataei DSM 12286   2 2
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   2 2
No Yes Haloarcula hispanica ATCC 33960   3 3
No Yes Haloarcula marismortui ATCC 43049   3 3
No Yes Halalkalicoccus jeotgali B3   3 3
No Yes Halobacterium salinarum R1   2 2
No Yes Halobacterium sp. NRC-1   2 2
No Yes methanocaldococcus infernus ME   1 1
No Yes Methanothermobacter marburgensis str. Marburg   1 1
No Yes Methanothermobacter thermautotrophicus str. Delta H   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 3 3
No Yes Frankia sp. EuI1c   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   2 2
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn17   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Corynebacterium pseudotuberculosis 258   1 1
No Yes Corynebacterium pseudotuberculosis P54B96   1 1
No Yes Corynebacterium pseudotuberculosis 267   1 1
No Yes Corynebacterium pseudotuberculosis 1/06-A   1 1
No Yes Corynebacterium pseudotuberculosis 42/02-A   1 1
No Yes Corynebacterium pseudotuberculosis 3/99-5   1 1
No Yes Corynebacterium pseudotuberculosis 31   1 1
No Yes Corynebacterium pseudotuberculosis CIP 52.97   1 1
No Yes Corynebacterium pseudotuberculosis PAT10   1 1
No Yes Corynebacterium pseudotuberculosis I19   1 1
No Yes Corynebacterium pseudotuberculosis FRC41   1 1
No Yes Corynebacterium pseudotuberculosis C231   1 1
No Yes Corynebacterium pseudotuberculosis 1002   1 1
No Yes Dehalococcoides mccartyi GY50   1 1
No Yes Dehalococcoides mccartyi DCMB5   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Dehalococcoides sp. GT   1 1
No Yes Dehalococcoides sp. VS   1 1
No Yes Dehalococcoides sp. CBDB1   1 1
No Yes Chthonomonas calidirosea T49   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Erysipelothrix rhusiopathiae SY1027   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Clostridium acidurici 9a   2 2
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Clostridium sp. SY8519   1 1
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   3 3
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Enterococcus mundtii QU 25   1 1
No Yes Enterococcus faecium Aus0085   2 2
No Yes Enterococcus faecium NRRL B-2354   1 1
No Yes Enterococcus faecium DO   1 1
No Yes Enterococcus faecalis str. Symbioflor 1   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis OG1RF   1 1
No Yes Enterococcus faecalis V583   2 2
No Yes Lactobacillus paracasei subsp. paracasei 8700:2   1 1
No Yes Lactobacillus casei LOCK919   1 1
No Yes Lactobacillus casei W56   1 1
No Yes Lactobacillus casei LC2W   1 1
No Yes Lactobacillus casei BD-II   1 1
No Yes Lactobacillus casei BL23   1 1
No Yes Lactobacillus casei str. Zhang   1 1
No Yes Lactobacillus salivarius UCC118   1 1
No Yes Lactobacillus fermentum F-6   1 1
No Yes Lactococcus lactis subsp. cremoris KW2   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Geobacillus sp. Y412MC52   1 1
No Yes Geobacillus sp. Y412MC61   1 1
No Yes Bacillus infantis NRRL B-14911   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   2 2
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Bacillus coagulans 36D1   1 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   1 1
No Yes Staphylococcus pseudintermedius ED99   2 2
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Staphylococcus lugdunensis N920143   1 1
No Yes Staphylococcus warneri SG1   1 1
No Yes Staphylococcus epidermidis ATCC 12228   1 1
No Yes Staphylococcus aureus CA-347   1 1
No Yes Staphylococcus aureus Bmb9393   1 1
No Yes Staphylococcus aureus M1   1 1
No Yes Staphylococcus aureus 08BA02176   1 1
No Yes Staphylococcus aureus ST228/18412   1 1
No Yes Staphylococcus aureus ST228/18341   1 1
No Yes Staphylococcus aureus ST228/16125   1 1
No Yes Staphylococcus aureus ST228/16035   1 1
No Yes Staphylococcus aureus ST228/15532   1 1
No Yes Staphylococcus aureus ST228/10497   1 1
No Yes Staphylococcus aureus ST228/10388   1 1
No Yes Staphylococcus aureus 04-02981   1 1
No Yes Staphylococcus aureus RF122   1 1
No Yes Staphylococcus aureus subsp. aureus Z172   1 1
No Yes Staphylococcus aureus subsp. aureus 6850   1 1
No Yes Staphylococcus aureus subsp. aureus SA957   1 1
No Yes Staphylococcus aureus subsp. aureus CN1   1 1
No Yes Staphylococcus aureus subsp. aureus SA40   1 1
No Yes Staphylococcus aureus subsp. aureus 11819-97   1 1
No Yes Staphylococcus aureus subsp. aureus M013   1 1
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   1 1
No Yes Staphylococcus aureus subsp. aureus VC40   1 1
No Yes Staphylococcus aureus subsp. aureus T0131   1 1
No Yes Staphylococcus aureus subsp. aureus LGA251   1 1
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   1 1
No Yes Staphylococcus aureus subsp. aureus JKD6159   1 1
No Yes Staphylococcus aureus subsp. aureus ED133   1 1
No Yes Staphylococcus aureus subsp. aureus ED98   2 2
No Yes Staphylococcus aureus subsp. aureus TW20   1 1
No Yes Staphylococcus aureus subsp. aureus 55/2053   1 1
No Yes Staphylococcus aureus subsp. aureus TCH60   1 1
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   1 1
No Yes Staphylococcus aureus subsp. aureus 71193   1 1
No Yes Staphylococcus aureus subsp. aureus S0385   1 1
No Yes Staphylococcus aureus subsp. aureus str. Newman   1 1
No Yes Staphylococcus aureus subsp. aureus Mu3   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   1 1
No Yes Staphylococcus aureus subsp. aureus JH9   1 1
No Yes Staphylococcus aureus subsp. aureus MSSA476   1 1
No Yes Staphylococcus aureus subsp. aureus MRSA252   1 1
No Yes Staphylococcus aureus subsp. aureus MW2   1 1
No Yes Staphylococcus aureus subsp. aureus N315   1 1
No Yes Staphylococcus aureus subsp. aureus Mu50   1 1
No Yes Staphylococcus aureus subsp. aureus COL   1 1
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   1 1
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Myxococcus stipitatus DSM 14675   3 3
No Yes Burkholderia phenoliruptrix BR3459a   3 3
No Yes Pandoraea pnomenusa 3kgm   3 3
No Yes Ralstonia solanacearum FQY_4   2 2
No Yes Ralstonia solanacearum Po82   2 2
No Yes Ralstonia solanacearum PSI07   2 2
No Yes Ralstonia solanacearum CMR15   2 2
No Yes Ralstonia solanacearum GMI1000   2 2
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   2 2
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia lata   4 4
No Yes Burkholderia ambifaria MC40-6   3 3
No Yes Burkholderia cenocepacia MC0-3   3 3
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   4 4
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   2 2
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   3 3
No Yes Variovorax paradoxus EPS   3 3
No Yes Taylorella asinigenitalis 14/45   2 2
No Yes Taylorella equigenitalis 14/56   2 2
No Yes Taylorella equigenitalis ATCC 35865   2 2
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis 18323   1 1
No Yes Bordetella parapertussis Bpp5   3 3
No Yes Bordetella bronchiseptica MO149   2 2
No Yes Bordetella bronchiseptica 253   3 3
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   2 2
No Yes Nitrosomonas sp. AL212   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   2 2
No Yes Leisingera methylohalidivorans DSM 14336   2 2
No Yes Octadecabacter antarcticus 307   2 2
No Yes Octadecabacter arcticus 238   3 3
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Paracoccus aminophilus JCM 7686   3 3
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   5 5
No Yes Sinorhizobium fredii HH103   5 5
No Yes Sinorhizobium meliloti 2011   2 2
No Yes Sinorhizobium meliloti GR4   3 3
No Yes Sinorhizobium meliloti Rm41   5 5
No Yes Sinorhizobium meliloti SM11   3 3
No Yes Sinorhizobium meliloti BL225C   4 4
No Yes Sinorhizobium meliloti 1021   4 4
No Yes Rhizobium etli CFN 42   3 3
No Yes Rhizobium etli bv. mimosae str. Mim1   7 7
No Yes Rhizobium tropici CIAT 899   5 5
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   3 3
No Yes Mesorhizobium australicum WSM2073   5 5
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Coxiella burnetii CbuK_Q154   1 1
No Yes Coxiella burnetii CbuG_Q212   1 1
No Yes Coxiella burnetii RSA 331   1 1
No Yes Coxiella burnetii RSA 493   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens FGI94   2 2
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   2 2
No Yes Dickeya dadantii 3937   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Pseudomonas denitrificans ATCC 13867   2 2
No Yes Pseudomonas monteilii SB3101   2 2
No Yes Pseudomonas monteilii SB3078   2 2
No Yes Pseudomonas putida H8234   2 2
No Yes Pseudomonas putida HB3267   2 2
No Yes Pseudomonas putida NBRC 14164   2 2
No Yes Pseudomonas putida DOT-T1E   2 2
No Yes Pseudomonas putida S16   2 2
No Yes Pseudomonas putida BIRD-1   2 2
No Yes Pseudomonas putida W619   2 2
No Yes Pseudomonas putida ND6   3 3
No Yes Pseudomonas putida KT2440   3 3
No Yes Pseudomonas putida GB-1   2 2
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas mendocina NK-01   2 2
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   2 2
No Yes Francisella noatunensis subsp. orientalis LADL--07-285A   1 1
No Yes Francisella tularensis subsp. holarctica F92   1 1
No Yes Francisella tularensis subsp. holarctica FTNF002-00   1 1
No Yes Francisella tularensis subsp. holarctica LVS   1 1
No Yes Francisella cf. novicida Fx1   1 1
No Yes Sulfolobus islandicus LAL14/1   1 1
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Sulfolobus islandicus HVE10/4   1 1
No Yes Sulfolobus islandicus Y.G.57.14   1 1
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   2 2
No Yes Sulfolobus acidocaldarius Ron12/I   2 2
No Yes Sulfolobus acidocaldarius N8   2 2
No Yes Methanolobus psychrophilus R15   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Halovivax ruber XH-70   2 2
No Yes Natrinema pellirubrum DSM 15624   3 3
No Yes Natronococcus occultus SP4   3 3
No Yes Natronobacterium gregoryi SP2   2 2
No Yes Haloquadratum walsbyi C23   2 2
No Yes Natronomonas moolapensis 8.8.11   2 2
No Yes Haloarcula hispanica N601   3 3
No Yes Methanobacterium sp. SWAN-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 4 4
No Yes Homo sapiens (NCBI version) Human 2 2
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Danio rerio 69_9 Zebrafish 1 1
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   8 8
No Yes 3_050719R (meta-genome)   3 3
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   1 1
No Yes Combined (meta-genome)   13 13
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   10 10
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   15 15
No Yes Dump top (Dump top) (meta-genome)   9 9
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   5 5
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   4 4
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   10 10
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   16 16
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   14 14
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   3 3
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   18 18
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   2 2
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   6 6
No Yes NCBI 2017_08 genome   32683 32683
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   6 6
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   12 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   5 5
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Sludge/US, Jazz Assembly (meta-genome)   2 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   3 3
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   7 7
No Yes STRING v9.0.5 (STRING)   412 412
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   6 6
No Yes Uniprot 2018_03 genome   10122 10122
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   12 12
No Yes Global Ocean Sampling Expedition (GOS)   184 184
No Yes NCBI plasmid sequences (Plasmids)   97 97
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   45 45
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   41 41
No Yes TargetDB (Targets)   18 18

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.