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TmoB-like superfamily domain assignments
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PDB chains (SCOP 1.75)

Network of domain occurrence in all genomes

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
1t0qC   1.68e-48   4-83   TmoB-like  
2incC   1.46e-48   2-81   TmoB-like  

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View all assignments containing a TmoB-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   709 709
No Yes Pseudonocardia dioxanivorans CB1190   4 4
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Kyrpidia tusciae DSM 2912   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Methylibium petroleiphilum PM1   2 2
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Cycloclasticus zancles 7-ME   1 1
No Yes NCBI 2017_08 genome   262 262
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   12 12
No Yes Uniprot 2018_03 genome   192 192
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   46 46
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   131 131

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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