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Cytokinin dehydrogenase 1 family domain assignments
in
Phoenix dactylifera

Assignment details

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Phoenix dactylifera (Early draft) has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
PDK_20s1386361g001   9.15e-36   0.0000608   208-422   1w1o A:246-534  
  9.37e-16   0.0031   465-518   1w1o A:246-534  
PDK_20s1455821g001   5.56e-69   0.00000119   40-284   1w1o A:246-534  
PDK_20s1501401g001   1.57e-89   0.00000141   50-325   1w1o A:246-534  
 
Weak hits:
PDK_20s1479321g001   3.27e-38   0.00015   236-411   1w1o A:246-534  
PDK_20s1550221g002   8.5e-44   0.00014   234-410   1w1o A:246-534  
PDK_20s1558602g001   8.5e-40   0.00031   371-528   1w1o A:246-534  
  3.2e-33   0.00046   172-318   1w1o A:246-534  

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Select to display   Genome       Domains   Proteins
No Yes ALL   3044 3044
No Yes Selaginella moellendorffii   4 4
No Yes Pinus taeda Loblolly pine 15 14
No Yes Picea abies Norway spruce 12 12
No Yes Eucalyptus grandis v201 Rose gum 12 12
No Yes Theobroma cacao B97-61/B2 v1 Cacao 5 5
No Yes Gossypium raimondii v221   20 20
No Yes Citrus clementina v165   9 9
No Yes Citrus sinensis v154 Sweet orange 5 5
No Yes Thellungiella halophila v173   7 7
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 10 10
No Yes Capsella rubella v183   7 7
No Yes Arabidopsis lyrata Lyrate rockcress 8 8
No Yes Arabidopsis thaliana 10 Thale cress 9 9
No Yes Carica papaya Papaya 5 5
No Yes Medicago truncatula Barrel medic 9 9
No Yes Phaseolus vulgaris v186 French bean 10 10
No Yes Glycine max v109 Soybean 17 17
No Yes Cucumis sativus v122 Cucumber 8 8
No Yes Fragaria vesca Wild strawberry 8 8
No Yes Malus domestica v196 Apple 13 13
No Yes Prunus persica v139 Peach 6 6
No Yes Linum usitatissimum v200 Flax 8 8
No Yes Manihot esculenta v147 Cassava 7 7
No Yes Populus trichocarpa v156 Black cottonwood 9 9
No Yes Vitis vinifera Wine grape 9 9
No Yes Mimulus guttatus v140 Spotted monkey flower 7 7
No Yes Solanum lycopersicum v.2.3 Tomato 9 9
No Yes Solanum tuberosum Potato 7 7
No Yes Actinidia chinensis Hongyang   11 11
No Yes Aquilegia coerulea v195   5 5
No Yes Triticum urartu 22   9 9
No Yes Triticum aestivum 22 Bread wheat 20 20
No Yes Aegilops tauschii 22   13 13
No Yes Brachypodium distachyon Stiff brome 10 10
No Yes Oryza barthii 22 African wild rice 10 9
No Yes Oryza meridionalis 22   10 9
No Yes Oryza glumaepatula 22   11 10
No Yes Oryza glaberrima African rice 9 9
No Yes Oryza punctata 22   10 9
No Yes Oryza nivara 22   11 10
No Yes Oryza brachyantha 22 Malo sina 10 10
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 11 11
No Yes Oryza sativa v193 Rice 10 10
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 4 4
No Yes Panicum virgatum v202 Switchgrass 16 16
No Yes Setaria italica v164 Foxtail millet 11 11
No Yes Zea mays subsp. mays Maize 18 18
No Yes Zea mays v181 Maize 20 20
No Yes Sorghum bicolor Sorghum 11 11
No Yes Musa balbisiana Balbis banana 18 18
No Yes Musa acuminata 22 Wild Malaysian banana 17 17
No Yes Amborella trichopoda 22   6 6
No Yes Physcomitrella patens   6 6
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 5 5
No Yes Hordeum vulgare 22 Domesticated barley 9 9
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 11 11
No Yes Lotus japonicus (Early assembly)   5 5
No Yes Malus x domestica (Duplicate) Apple 13 13
No Yes Ricinus communis (Early assembly) Castor bean 6 6
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   7 7
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 9 9
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 9 9
No Yes Phoenix dactylifera (Early draft) Date palm 3 3
No Yes Arabidopsis thaliana 10 Thale cress 7 7
No Yes NCBI 2017_08 genome   863 863
No Yes STRING v9.0.5 (STRING)   82 82
No Yes Uniprot 2018_03 genome   1133 1124
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   14 14
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   72 72
No Yes TargetDB (Targets)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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